XLOC_026573 (yipf2)


Basic Information

Item Value
gene id XLOC_026573
gene name yipf2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34174004 ~ 34180464 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051760
GTGTTTTGACGCAGCGGAACCCTGCAGGTGACGTGGAATATGGGGACGATAACGCTAAATCCTTGTGTATTAAAACTGCATCAAATGATTTCTATCTGTAATCGAATCGTTTGCAGATATTATTGATCCCACTTAGCCAAAGGGTGTTACAAAACACCAGCCGAGCTGACAAAACGATTGTTTTTGTATTTGCTAGCTCGACACAAGCTGAATAATAGCAGCATCAGGAAACACACTGCTGGATTATCAGCCAGtcgTTTTTCCCTTGAAGagtgaattcgtatgatctccaGTCATGGCTAGTCCAGATGATTTAAAGTTTCAAGAGTTTGAAGAAGCCGAAGATCTCCTGTCCTCAAATCCTGGAGCCTCAACCCTCAGCATCTCCAGCTCAaacccagcagcagcagcagccccATCTGGAGAGGTCAGACTCGACCTGTCCGACGATGAAGAGAATCAGCAGGAGAGTTCAGAGTTGCTTGGAGGGGAAAAGAAAACTGGTGGGTTTTGGACGTTTGAATACTATCAGTCGTTCTTCAACGTAGATACAGTGCagGTGCTGGATAGGATAAAGGGCTCAGTTATGCCTTTGCCAGGAAGGAATTTCATCAAACATCATATACGAAGCAACCCTGATCTATATGGTCCTTTCTGGATCTGTGTGACTCTAGTGTTCTCACTGGCCATCAGCGGGAACCTCTccacatttttgagtgagatgggAAATCCAGAGTATCACTACAGACCTCAATTTCACAGAGTCTCCATTGCAGCAGTCACGGTGTTCCTCTATGCATGGCTGGTGCCACTAGGAGTTTGGGGCTTCCTCACGTGGCGTCAAAGTGTCGAGAGACAGATCAACGGATACACATTTTTAGAGACAGTCTGTGTCTACGGCTACTCTTTGTTCATTTACATTCCTACCTCGGTATTATGGACTATTCCTTTCAACTGGCTCCAGTGGTTGTTGATTGTGGTTGCAATGGTGATCTCTGGTTCGGTGTTGGTGATCACGTTCTGGCCGGCGGTTCGTGATGATACTAAACTAACGGCTTTCGCCACTGTGGCTGTTATCGTGGCACTTCACGCACTGCTGGCTGTCGGCTGTAAGCTCTACTTCTTCCACACGGCAGAGGACACCCGATCTCCACACCCAGGACAGCATATTACTCCAGCCTCAAATCACACAACAGCACTTAAAACTTAATGACGAACCACAGGACAACAGATGAGTCTTTACATTCAAgggacattaaaaaaaagtgttgtagTTGAGCGATGAAGGAGATCTGATCAGTGTGCTAAAGCTAGAAGCACACATCCATTCCCAGCAAACAGCTTGAAAATGTTAACTAACCCAGCAGAAGAAATAACCGCCCTTTAATTTTGTGTTATGGTCGTTTATGTTCATTACCTTTAATTTAATGGGCTAGTTTTGAGTTTGTCATTCAATATTGAGTAATTTAAGAGTGATCATGCTTTACTGTGAATTGATTTGAGGTTTGCCTTACAACCCTTGACTGCTTCCTTTTCTTTCAAGTCTGTTGTTTTCCTTCATTGATGTAATTTAAGAGAGAAAACACCAGTGTGtgtgaaatatttaattttcctttcctgaa
>TCONS_00051761
ATCGAATCGTTTGCAGATATTATTGATCCCACTTAGCCAAAGGGTGTTACAAAACACCAGCCGAGCTGACAAAACGATTGTTTTTGTATTTGCTAGCTCGACACAAGCTGAATAATAGCAGCATCAGGAAACACACTGCTGGATTATCAGCCAGagtgaattcgtatgatctccaGTCATGGCTAGTCCAGATGATTTAAAGTTTCAAGAGTTTGAAGAAGCCGAAGATCTCCTGTCCTCAAATCCTGGAGCCTCAACCCTCAGCATCTCCAGCTCAaacccagcagcagcagcagccccATCTGGAGAGGTCAGACTCGACCTGTCCGACGATGAAGAGAATCAGCAGGAGAGTTCAGAGTTGCTTGGAGGGGAAAAGAAAACTGGTGGGTTTTGGACGTTTGAATACTATCAGTCGTTCTTCAACGTAGATACAGTGCagGTGCTGGATAGGATAAAGGGCTCAGTTATGCCTTTGCCAGGAAGGAATTTCATCAAACATCATATACGAAGCAACCCTGATCTATATGGTCCTTTCTGGATCTGTGTGACTCTAGTGTTCTCACTGGCCATCAGCGGGAACCTCTccacatttttgagtgagatgggAAATCCAGAGTATCACTACAGACCTCAATTTCACAGAGTCTCCATTGCAGCAGTCACGGTGTTCCTCTATGCATGGCTGGTGCCACTAGGAGTTTGGGGCTTCCTCACGTGGCGTCAAAGTGTCGAGAGACAGA
>TCONS_00051762
GTGGAATATGGGGACGATAACGCTAAATCCTTGTGTATTAAAACTGCATCAAATGATTTCTATCTGTAATCGAATCGTTTGCAGATATTATTGATCCCACTTAGCCAAAGGGTGTTACAAAACACCAGCCGAGCTGACAAAACGATTGTTTTTGTATTTGCTAGCTCGACACAAGCTGAATAATAGCAGCATCAGGAAACACACTGCTGGATTATCAGCCAGtcgTTTTTCCCTTGAAGagtgaattcgtatgatctccaGTCATGGCTAGTCCAGATGATTTAAAGTTTCAAGGTAAGGATTGTGTTCATCTGTAACGTTATGTACCTTACTGTTCAGGTGTCtctgttttaatctgttttaagtTGTGTCTGTTGTTTTTCACATGTTCAGAGTTTGAAGAAGCCGAAGATCTCCTGTCCTCAAATCCTGGAGCCTCAACCCTCAGCATCTCCAGCTCAaacccagcagcagcagcagccccATCTGGAGAGGTCAGACTCGACCTGTCCGACGATGAAGAGAATCAGCAGGAGAGTTCAGAGGTG
>TCONS_00051763
GCGGAACCCTGCAGGTGACGTGGAATATGGGGACGATAACGCTAAATCCTTGTGTATTAAAACTGCATCAAATGATTTCTATCTGTAATCGAATCGTTTGCAGATATTATTGATCCCACTTAGCCAAAGGGTGTTACAAAACACCAGCCGAGCTGACAAAACGATTGTTTTTGTATTTGCTAGCTCGACACAAGCTGAATAATAGCAGCATCAGGAAACACACTGCTGGATTATCAGCCAGagtgaattcgtatgatctccaGTCATGGCTAGTCCAGATGATTTAAAGTTTCAAGGTAAGGATTGTGTTCATCTGTAACGTTATGTACCTTACTGTTCAGGTGTCtctgttttaatctgttttaagtTGTGTCTGTTGTTTTTCACATGTTCAGAGTTTGAAGAAGCCGAAGATCTCCTGTCCTCAAATCCTGGAGCCTCAACCCTCAGCATCTCCAGCTCAaacccagcagcagcagcagccccATCTGGAGAGGTCAGACTCGACCTGTCCGACGATGAAGAGAATCAGCAGGAGAGTTCAGAGGTG

Function

symbol description
yipf2 Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in late endosome membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human YIPF2 (Yip1 domain family member 2).

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-124 Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in late endosome membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human YIPF2 (Yip1 domain family member 2).

Ensembl:

ensembl_id ENSDARG00000021399

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051760 False 1622 mRNA 0.44 9 34174004 34180464
TCONS_00051761 False 743 mRNA 0.47 7 34177047 34180364
TCONS_00051762 False 548 lncRNA 0.43 2 34179807 34180432
TCONS_00051763 True 550 lncRNA 0.44 2 34179807 34180451

Neighbor

gene id symbol gene type direction distance location
XLOC_026572 NA coding downstream 32823 34139637 ~ 34141181 (-)
XLOC_026571 clpp coding downstream 37226 34129505 ~ 34136778 (-)
XLOC_026570 ighv4-1 coding downstream 58118 34115438 ~ 34115886 (-)
XLOC_026569 ighv4-2 coding downstream 60166 34113410 ~ 34113838 (-)
XLOC_026568 ighv4-3 coding downstream 66319 34107197 ~ 34107685 (-)
XLOC_026574 tnrc6c1 coding upstream 78291 34258755 ~ 34337969 (-)
XLOC_026575 sept9a coding upstream 271872 34452336 ~ 34586403 (-)
XLOC_026576 si:ch211-165d12.4 coding upstream 407524 34587988 ~ 34593639 (-)
XLOC_026577 nmrk1 coding upstream 417277 34597741 ~ 34599662 (-)
XLOC_026578 zgc:163143 coding upstream 421388 34601852 ~ 34613101 (-)
XLOC_026558 BX649502.11 non-coding downstream 87521 34086041 ~ 34086483 (-)
XLOC_026547 BX649502.5 non-coding downstream 109068 34063955 ~ 34064936 (-)
XLOC_026544 BX649502.10 non-coding downstream 115287 34058679 ~ 34058717 (-)
XLOC_026539 BX649502.4 non-coding downstream 125351 34048205 ~ 34048653 (-)
XLOC_026580 NA non-coding upstream 460584 34641048 ~ 34641973 (-)
XLOC_026585 NA non-coding upstream 766938 34947402 ~ 34948061 (-)
XLOC_026588 NA non-coding upstream 1384664 35565128 ~ 35574451 (-)
XLOC_026600 NA non-coding upstream 2139775 36320239 ~ 36323625 (-)
XLOC_026606 NA non-coding upstream 2402636 36583100 ~ 36587136 (-)

Expression


Co-expression Network