LOC118965963


Basic Information

Item Value
gene id LOC118965963
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 1947567 ~ 2084414 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053091.1
CTCGGGAGCTGAGTGGCCTCGGGAGCTGAGTGGCCTCGGGAGCTGCACGGCCTCGGGAGCTGAGCGGCCTCGGGAGCTGCGCGGCCTCGGGAGCTGCACGGACAAACTGACCTACTCACAAAGACAATACCCTTTGACCGGGTGATGCTCCTGAGACGGCTGAAGGAGGAAGAGTTAATTGTCCTAAAGGAAGTCCAGTAGCACTGGGAAAGCCTAAAGAGGGAATCGGAGAATGTGCAAGACCTTGCTTCACATGTGACACTTAACCTAAGCAGGCAAAGTAGGGAACGTTCATTGATATGTACATTTTATGTTGGCACCCTGTAATTGATATTGTATTTAAGGAATACTTCATTGTATTTACCCGACACATTACGATTGTTGGTGTTAGGCTGACAATTTAATCAGTCGGAAGCTGGGAGCAGAGGTCTCTTCTCCATGCTTCAGAGGAGAGTCAGCAGCCTCAGAAGACACCAGGACTCTGTCAAACTGATATACAGCAAAGCTATGGGCCAAGACACCTCCCTCCTAGAAGATAACTTCATAGATGACCTCCTGAAAGAGGACCTAGATGACAGCATCCACTACAGCTCTGATGACGAGGAATCTGTCCCAGACTGACGGTGTTCGTTTGGGTGGGTGCAGTTTGCATTGGGTGGAAAGtgattccatttgttttgtagaTGTGCTTTATCTACCTTCCTAAGGAAAAATAGTTTTAACATTTTATGGAAAATAAAGGTTTATGTTTCTTCCTTGTTGACAATGTGATCATGTGGTACAGATTTGAGAAGGGCGCTCGTCTGTTACTGCTTTTGCCCGATCACATGACCAGGTCACATGACCAGGTCCGATCCCTTTAAATGACCAATCTGCAGTTGATACATCCACTTATGGATGCTTGAAGAATAtcatttataaatgcctcatgaataTAGTTCAACTGCCGTACCCCATCAGATCCCAAAATAGATGTTTTTGTtctactccaatgtttgtaaacaaagtaaatgtaaacattcA
>TU868618
CACCAGGACTCTGTCAAACTGATATACAGCAAAGCTATGGGCCAAGACACCTCCCTCCTAGAAGATAACTTCATAGATGACCTCCTGAAAGAGGACCTAGATGACAGCATCCACTACAGCTCTGATGACGAGGAATCTGTCCCAGACTGACGGTGTTCGTTTGGGTGGGTGCAGTTTGCATTGGGTGGAAAGtgattccatttgttttgtagaTGTGCTTTATCTACCTTCCTAAGGAAAAATAGTTTTAACATTTTATGGAAAATAAAGGTTTATGTTTCTTCCTTGTTGACAATGTGATCATGTGGTACAGATTTGAGAAGGGCGCTCGTCTGTTACTGCTTTTGCCCGATCACATGACCAGGTCACATGACCAGGTCCGATCCCTTTAAATGGCCAATCTGCAGTTGATACATCCACTTATGGATGCTTGAAGAATAtcatttataaatgcctcatgaataTAGTTCAACTACCCCATCAGATCCCAAAATAGATGTTTTTGTtctactccaatgtttgtaaacaaagtaaatgtaaacattcACTAGCATGTGTCCAACTCATTCCACGGTgagccgagtgtctgcgggtttcaCTCCTCCCATGGAGCTACATCAGTACATTAGTCATGGGATTTTAAGTTAAGGTGACCAGATTTCTGAAATTAAAACCGGGGACATTTCCAGTTCGGAGTTCAATATATCATTACAATATCCAATGTTATTATCTATTATATAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053091.1 False 1023 mRNA 0.45 2 2083262 2084414
TU868618 True 741 lncRNA 0.40 2 1947567 2083813

Neighbor

gene id symbol gene type direction distance location
LOC118965962 NA coding downstream 8371 2069921 ~ 2074891 (-)
LOC118965956 NA coding downstream 102375 1968575 ~ 1980887 (-)
LOC110517376 LOC106589966 coding downstream 304797 1744643 ~ 1778465 (-)
LOC110515190 NA coding downstream 345724 1642134 ~ 1737538 (-)
LOC118966147 LOC106589966 coding downstream 600400 1403901 ~ 1482862 (-)
LOC118965955 NA coding upstream 73568 2157982 ~ 2158681 (-)
LOC118966148 NA coding upstream 77347 2161247 ~ 2162609 (-)
LOC110535267 NA coding upstream 127860 2212274 ~ 2354313 (-)
mog NA coding upstream 272897 2357311 ~ 2369477 (-)
LOC110519362 NA coding upstream 528053 2612467 ~ 2680635 (-)
G763633 NA non-coding downstream 29983 2048314 ~ 2053279 (-)
G763619 NA non-coding downstream 51008 2018904 ~ 2032254 (-)
G763586 NA non-coding downstream 60435 1955221 ~ 2022827 (-)
G763587 NA non-coding downstream 105031 1962973 ~ 1978231 (-)
G763579 NA non-coding downstream 114995 1941559 ~ 1968267 (-)
G763638 NA non-coding upstream 2105 2086519 ~ 2088592 (-)
G763645 NA non-coding upstream 25443 2109857 ~ 2112605 (-)
G763646 NA non-coding upstream 30266 2114680 ~ 2115090 (-)
G763652 NA non-coding upstream 55920 2140334 ~ 2141422 (-)
G763655 NA non-coding upstream 58994 2143408 ~ 2144350 (-)
G762459 NA other downstream 1216830 861374 ~ 866432 (-)
G762118 NA other downstream 1646762 429600 ~ 436500 (-)
G762116 NA other downstream 1784743 293672 ~ 298519 (-)
G762179 NA other downstream 1790977 290345 ~ 292285 (-)
G763719 NA other upstream 388684 2473098 ~ 2486901 (-)
G763961 NA other upstream 1211888 3286243 ~ 3299103 (-)
LOC110498423 LOC105006500 other upstream 1767557 3851852 ~ 3901549 (-)
LOC118966151 LOC106587785 other upstream 1929420 4012152 ~ 4033537 (-)
G765059 NA other upstream 2206381 4270732 ~ 4319826 (-)
LOC118965952 NA coding downstream 584305 1301207 ~ 1363262 (-)
LOC118966146 NA coding downstream 648008 1124821 ~ 1299559 (-)
G763569 NA non-coding downstream 21297 1906656 ~ 1926270 (-)
G763572 NA non-coding downstream 28153 1911678 ~ 1919414 (-)
G763567 NA non-coding downstream 38909 1905347 ~ 1908658 (-)
G763566 NA non-coding downstream 42448 1902480 ~ 1905119 (-)
G763560 NA non-coding downstream 72483 1861727 ~ 1875084 (-)
G761802 LOC106562215 other downstream 1922060 25142 ~ 25507 (-)

Expression


Co-expression Network