XLOC_026576 (si:ch211-165d12.4)


Basic Information

Item Value
gene id XLOC_026576
gene name si:ch211-165d12.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34587988 ~ 34593639 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051775
taattctAAATGGGTCTTATTTTCCAGTGtctatgtaaagctacccaatcaggccAACACCTGTATACAGTATAAAGACACTAACTAAACGTCTCAGTAAAACTTATATTTACAGCTCTGTTTAACGCTATGGTTCCTCACAATAACATCTgtaagttctccatgtatttgcAGACCATATgtggtgaggacactgacctggacagactgttgtactattagtttattatagtttttaaagcttGTCAAAGAAAAGTATGTATGGTTTGCTTGttctgacacattatttaagtaCTATTTAGTTATTACTTTTTTTGGAAAGTAAAAATCCTCAAGGTTAAGCCCATTATAAGTCTTAAAATTCATtcataaaaaggtcttaaaattgacttgctgaaacctgcagaaaccctaaaAAATACTGCAGTTTTCCATAAAAAGAATAATCCATGTTGATTTAATTGAGCTTTAAATATATTACGGCGTTTATTTAATGATAATGATGCAATTACTTGTCCATTGTAGTTCTTCTGAAATCACTAAATGAATCAAGaagatatttttttcacatttaaaagcagaactcttgaaaatgtttttgctttCAGATGCCTGAGGGTTGCTGACTAAGATGTGGAAGTTGTGGGctggagcgtgtgtgtgtgtgtgcgcatgagagagagagagagtatataAATTTGCAGTGCAGACTTAAGATTTGGTTTGCTTCTTGTGTTTAGTTGGAGATGCTCTGATGACAATGAGAATGAAGACTCTGCTGTTTACCTTCCTGTTGTTGGGTGTTCTTTGTCTCAGCAGCTTTGCAGAAAGTGCAGATGTGATCAAATTTAAAGGTGAAAGTGCCACCATGAAGTGTCATATCTCTGATAAAGATGCGATGGGAGTGTCTCTGTTCACCCGACATAAGGATAAGCAGGAAGTCTTATACTACTTTATACAAtcaaacaaattaactattaagcCTACTCATGAAGGACGTGTTGAAGCCAAATTTGATGGCAAGACTCTGACTGTAGACATCTTGAACCTGCAAAAAGAAGATACCGGTGCCTACTGGTGCGAGTGCAATCATATAGTGACTCGTGAGTGTAAAATGGATCAGTCTGGTGTTGTTCTTGTGGTTCATGACCGAGAGAGACAGCAAAATACGGGGCAAGTTTCTGCTTCCACTGCTCCTTCAAAGTTTGGAGGCATGAACGGCTTACTGGTTCCAGTGGTGGCTCTGACCGCCAGCAGTGTGCTTTTACTCTTGCTTCTGGTGCTGGGAGTGTGGGTCGTGCCCAAGATTAAGAAGATGAGACAAACCGCTGAACAGGAAAAAACGTCTGCAAATGAAGTGTACGAGGTCATGACTGTGAAGAGGGAGTACAGATGAGAAATCAACAGATTTCAGGTTCTGGGCtgatttttgtgtttgtgtgtgatatcATCAAATGTTGTTACATGACAGCAAGTCACTGGATTGTACCTTCTCAGGGGTTAAATTATTGTCATTATCAATATAATAGTCTGAAAGAATGCAAACCTTTTGTTATTTCGCCATTTTATGCCGTCAGGGcatttttactttcatttgaaAGAATGCCATCAGTATTTGAcagaagaaatatatatatatatatataaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattgaaatatataagtaaataaaaaaatagagaaaTATATATGCATGagtataaataacatttacttttgTACTGTTAGTAAGTACTGTCTGATTTGAGTTGTTTAATCTATCtctgttcattcatttacttttcggcttagtccttttattaatctgggcttgccacagcggaatgaactgccaacttatccagcatatgtttacgcagcagatactctTCTTGCtgtaacccataactgggaaacacccgttcACTCTcattttctctcacacacactacagataatttagcttattcaattcacctatagcgcatgtctttgaaaccggagcacccggagtaaacccatccaaacatgggaagaacatgcaaacttcacacagaaatgccaactgacccagccgaggcttgaaccagtgaccttcagcgctacccactgcaccattgcGTAAACCCCTCTGTTGATATTTCATTTTACAAATTTAGAGAAATCCCTTCTATCCTCTTCTGTCTATTGTAAATAtcacagagtgcattaagatatATTAACATATgagtttttattctgtttttatgaGGTGTAAGTTGTTTGAAAACCTGAATGTATAGTTTCACCAGTGTACATTGCACTGCTAATTTACAGGAACAAAAATAACAAGACAATAGAAAAACAGGATGTGTAAATGTCCCTTAGTTTCAGTCTGTGCTTTTTCTGTGACTTGCGGTCTATAGTCTGCTTTGGCTGTCCTTTTGCACATTCTGCTTCTCAGAGATGAATATGCAGACGTCTTCCTGTGGCATAGTATAGTCAAGACCACTTATGAGCAAGACTGCATCTCCTGAAGAGAAGCTCACCAATTTTCATTTAACTTTAGCCCACCAAAACATAAAGATCGAAACTTCAAGTGTTATAACTACATTGGGGAGTTACCAGAAGTCAGAAGACACATGAGAGAAAATATCAGCTTAAGAGTCTTTGCCAAATCAGTTTCTCTTTGTATATATGTTATTTCTTTACATAAAGGACTTGTTGTCTAGGTTGTACATCAAAATGGCATGTTGTTCCCATCAGAAGAatgtcattaataaaaaaaaatctgtaaataaaaatatttttttaaagtaa
>TCONS_00051776
ctcttgaaaatgtttttgctttCAGATGCCTGAGGGTTGCTGACTAAGATGTGGAAGTTGTGGGctggagcgtgtgtgtgtgtgtgcgcatgagagagagagagagtatataAATTTGCAGTGCAGACTTAAGATTTGGTTTGCTTCTTGTGTTTAGTTGGAGATGCTCTGATGACAATGAGAATGAAGACTCTGCTGTTTACCTTCCTGTTGTTGGGTGTTCTTTGTCTCAGCAGCTTTGCAGAAAGTGCAGATGTGATCAAATTTAAAGGTGAAAGTGCCACCATGAAGTGTCATATCTCTGATAAAGATGCGATGGGAGTGTCTCTGTTCACCCGACATAAGGATAAGCAGGAAGTCTTATACTACTTTATACAAtcaaacaaattaactattaagcCTACTCATGAAGGACGTGTTGAAGCCAAATTTGATGGCAAGACTCTGACTGTAGACATCTTGAACCTGCAAAAAGAAGATACCGGTGCCTACTGGTGCGAGTGCAATCATATAGTGACTCGTGAGTGTAAAATGGATCAGTCTGGTGTTGTTCTTGTGGTTCATGGTGAGTAAATATGtctttaatacttttaaatatgTCTACTTGCATAATAATTAGTACAATTTTGAATACATGTAGAAATGAGTATAGTTTTAGTTGTGCTCTGATCGTTTAAGCTGTGATGTATTGTTTTATGTTagtgtaat

Function

symbol description
si:ch211-165d12.4 Predicted to enable signaling receptor activity. Predicted to act upstream of or within adaptive immune response. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0002250 adaptive immune response biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080303-7 Predicted to enable signaling receptor activity. Predicted to act upstream of or within adaptive immune response. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000079353

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051775 False 2844 mRNA 0.36 4 34587988 34593639
TCONS_00051776 True 708 lncRNA 0.39 2 34591917 34593056

Neighbor

gene id symbol gene type direction distance location
XLOC_026575 sept9a coding downstream 1585 34452336 ~ 34586403 (-)
XLOC_026574 tnrc6c1 coding downstream 250019 34258755 ~ 34337969 (-)
XLOC_026573 yipf2 coding downstream 407524 34174004 ~ 34180464 (-)
XLOC_026572 NA coding downstream 446807 34139637 ~ 34141181 (-)
XLOC_026571 clpp coding downstream 451210 34129505 ~ 34136778 (-)
XLOC_026577 nmrk1 coding upstream 4102 34597741 ~ 34599662 (-)
XLOC_026578 zgc:163143 coding upstream 8213 34601852 ~ 34613101 (-)
XLOC_026579 tac4 coding upstream 29921 34623560 ~ 34624745 (-)
XLOC_026580 NA coding upstream 47409 34641048 ~ 34641973 (-)
XLOC_026581 znfl1 coding upstream 58505 34652144 ~ 34656745 (-)
XLOC_026558 BX649502.11 non-coding downstream 501505 34086041 ~ 34086483 (-)
XLOC_026547 BX649502.5 non-coding downstream 523052 34063955 ~ 34064936 (-)
XLOC_026544 BX649502.10 non-coding downstream 529271 34058679 ~ 34058717 (-)
XLOC_026539 BX649502.4 non-coding downstream 539335 34048205 ~ 34048653 (-)
XLOC_026585 NA non-coding upstream 353763 34947402 ~ 34948061 (-)
XLOC_026588 NA non-coding upstream 971489 35565128 ~ 35574451 (-)
XLOC_026600 NA non-coding upstream 1726600 36320239 ~ 36323625 (-)
XLOC_026606 NA non-coding upstream 1989461 36583100 ~ 36587136 (-)

Expression


Co-expression Network