LOC110531335 (LOC106593060)


Basic Information

Item Value
gene id LOC110531335
gene name LOC106593060
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 2858759 ~ 2861355 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614538.2
TGAACTCACTCTGCTAATCACCAATTCCTCTTCCATTCTTCTGGTATATAAGCAGCTTGTTCTACTTGGGTTTGTTCAGCATTTGTGGTGTCCCAGTTCCTTTATAGGTCCTGTTGTTAATTGGCTAAAGAGACTCCATGACCATGTTGACCAGTCTTCTGCTTCTCAGTGCTGCCTTTGCTCTGGGAGATGCAAATTCATTGCTAGAAGAAGACTTGTGTCCTTCCGGTTGGACCAAATATGGATCACGCTGTTTAATGTTTGTAAAGACTACAAGGAGCTGGCCTGAAGCAGAGCGGTACTGTGTGTCCCTTGGTGATCAACTGGTGTCTGTACCCAACGTTGTGGAGTACCTTGGCGCAAACCTGGCATCTGTGCACAGCTCTGAGGAGGACCAGTTTCTACAGGCGTTGGTCTTGGTCAAGACTGTTGGTTTCCCTCCTACCTGGATTGGCGGATTTTATTCTGTTAAGGACAGGCGGTGGTTCTGGAGTGATGGCTCCGACTTTGATCACCAGAACTGGGCTGAAGGAAGGCCTGATGCTGGTGCCAGAGAGTCTTGTGTTCatatcaactttggagGTCAACAGCTCTGGAACAATGCATTATGTGAAAGGAGCTTGCCCTCTGTGTGCTCCCTGAGGCTCCTTCCGCTTCGCCAGAGTATCCATTAAAAGCAGCATTGCTATTCCGTAGCGTCTTTGTCCTTAATAATTCATGGGAAGCTTTGTTGCTGTTAAATGAAGTCTCAGTTACTATACAAATGTTGAGGAATTGTTTGCAGCCAATAAAATGTGGACACTAT
>XM_036987047.1
GTTACAGCTTGTGAGATGAGACGTGGAGACTCCATGACCATGTTGACCAGTCTTCTGCTTCTCAGTGCTGCCTTTGCTCTGGGAGATGCAAATTCATTGCTAGAAGAAGACTTGTGTCCTTCCGGTTGGACCAAATATGGATCACGCTGTTTAATGTTTGTAAAGACTACAAGGAGCTGGCCTGAAGCAGAGCGGTACTGTGTGTCCCTTGGTGATCAACTGGTGTCTGTACCCAACGTTGTGGAGTACCTTGGCGCAAACCTGGCATCTGTGCACAGCTCTGAGGAGGACCAGTTTCTACAGGCGTTGGTCTTGGTCAAGACTGTTGGTTTCCCTCCTACCTGGATTGGCGGATTTTATTCTGTTAAGGACAGGCGGTGGTTCTGGAGTGATGGCTCCGACTTTGATCACCAGAACTGGGCTGAAGGAAGGCCTGATGCTGGTGCCAGAGAGTCTTGTGTTCatatcaactttggagGTCAACAGCTCTGGAACAATGCATTATGTGAAAGGAGCTTGCCCTCTGTGTGCTCCCTGAGGCTCCTTCCGCTTCGCCAGAGTATCCATTAAAAGCAGCATTGCTATTCCGTAGCGTCTTTGTCCTTAATAATTCATGGGAAGCTTTGTTGCTGTTAAATGAAGTCTCAGTTACTATACAAATGTTGAGGAATTGTTTGCAGCCAATAAAATGTGGACACTA
>XM_036987048.1
GTTACAGCTTGTGAGATGAGACGTGGAGACTCCATGACCATGTTGACCAGTCTTCTGCTTCTCAGTGCTGCCTTTGCTCTGGGAGATGCAAATTCATTGCTAGAAGAAGACTTGTGTCCTTCCGGTTGGACCAAATATGGATCACGCTGTTTAATGTTTGTAAAGACTACAAGGAGCTGGCCTGAAGCAGAGGACAGGCGGTGGTTCTGGAGTGATGGCTCCGACTTTGATCACCAGAACTGGGCTGAAGGAAGGCCTGATGCTGGTGCCAGAGAGTCTTGTGTTCatatcaactttggagGTCAACAGCTCTGGAACAATGCATTATGTGAAAGGAGCTTGCCCTCTGTGTGCTCCCTGAGGCTCCTTCCGCTTCGCCAGAGTATCCATTAAAAGCAGCATTGCTATTCCGTAGCGTCTTTGTCCTTAATAATTCATGGGAAGCTTTGTTGCTGTTAAATGAAGTCTCAGTTACTATACAAATGTTGAGGAATTGTTTGCAGCCAATAAAATGTGGACACTA

Function

NR:

description
ladderlectin-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614538.2 False 805 mRNA 0.46 6 2858759 2861355
XM_036987047.1 False 700 mRNA 0.48 6 2858760 2861089
XM_036987048.1 True 523 mRNA 0.46 5 2858760 2861089

Neighbor

gene id symbol gene type direction distance location
LOC110531328 LOC106578170 coding downstream 34662 2813395 ~ 2824097 (-)
LOC110518027 LOC106599962 coding downstream 70322 2727465 ~ 2788437 (-)
LOC110519362 NA coding downstream 178124 2612467 ~ 2680635 (-)
mog NA coding downstream 489282 2357311 ~ 2369477 (-)
LOC110535267 NA coding downstream 504446 2212274 ~ 2354313 (-)
LOC110531336 LOC106593060 coding upstream 9412 2870767 ~ 2875089 (-)
LOC110531340 LOC106578174 coding upstream 25217 2886572 ~ 2913710 (-)
LOC110531345 NA coding upstream 61073 2922428 ~ 2925281 (-)
LOC110531347 NA coding upstream 95952 2957307 ~ 2958552 (-)
LOC110531341 NA coding upstream 125456 2986811 ~ 3004194 (-)
G763825 NA non-coding downstream 3347 2853985 ~ 2855412 (-)
G763817 NA non-coding downstream 22217 2835890 ~ 2836542 (-)
G763816 NA non-coding downstream 28249 2830152 ~ 2830510 (-)
G763815 NA non-coding downstream 29152 2829376 ~ 2829607 (-)
G763800 NA non-coding downstream 48118 2809239 ~ 2810641 (-)
G763833 NA non-coding upstream 4537 2865892 ~ 2866277 (-)
G763840 NA non-coding upstream 40352 2901707 ~ 2902841 (-)
G763844 NA non-coding upstream 55700 2917055 ~ 2917263 (-)
G763806 NA non-coding upstream 100399 2961754 ~ 2962681 (-)
G763719 NA other downstream 371858 2473098 ~ 2486901 (-)
G763587 NA other downstream 880528 1962973 ~ 1978231 (-)
G762459 NA other downstream 1992327 861374 ~ 866432 (-)
G762118 NA other downstream 2422259 429600 ~ 436500 (-)
G762116 NA other downstream 2560240 293672 ~ 298519 (-)
G763961 NA other upstream 434947 3286243 ~ 3299103 (-)
LOC110498423 LOC105006500 other upstream 990616 3851852 ~ 3901549 (-)
LOC118966151 LOC106587785 other upstream 1152479 4012152 ~ 4033537 (-)
G765059 NA other upstream 1429440 4270732 ~ 4319826 (-)
G765100 LOC106597704 other upstream 1584972 4446327 ~ 4536079 (-)

Expression


Co-expression Network