LOC110531345


Basic Information

Item Value
gene id LOC110531345
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 2922428 ~ 2925281 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474651.2
TGGCCGACATCGGCAACTCTCGTTGGGTTAATGAGGCAACTAGTCACACCTGTGACAGGTCCTTTaaaaggagaggtggaagaggtagAACATAACTTAGAGGGAGACACCCAGTGAATCCCTTGGAAGAGTGCAGAAGACCATCATGGCGCTATTGACTGTCATTCTGCTTGTCAGCACAGCTTTTTCTCTGGGAGATGCTACGAAAGGACCCAAGACCCCCCGTGAACCTCCTATAAATACTGTGAAAAATGGCCCGCCTGGAGACTACGGCTCCACGTGCGACTGCCAGGGAGAATACGCTCCTGAGCACCACTGGGGCTCTACAGGTTCCTCTTCGTGTCTTACCAGAACTGGATGGACTATCCCGGAAACTCATCCTGGCACTGCACCAATCAAATGTGCATGCAGTGGTGCTTGCAGATGAAAGGTGTTGGAAGAGAAGACTGCGAAATACATTGCTGGGTTGTCTTTACTGTACTATGGGAGCAGACTCACGTTCCGTATACATGAAGAGATCCAGAGATACGATTGTTGCATTACATCCTTTATTGGTTTGATTTGCCGAACGTTTTAGCTGAGCGTTTCTGGGACATGGAGGAATGACTTGGGCGACTATGATGACCCGTATGACCACCACACGTGTCAtaaaggcagtcaaattccatgtgaccacTTCGTCATGGTAACTGGGCTTTAACAAGCTATTGTGCTGCTGATGGTCATGAGTAGTCTACTGTACTTCCTGGTACTCGGCACTTTATTGCCCTCTAATCACTAGCAATGTAATTGCAAATCAACTATTGATCATTGTACATGTGATtagcagattttttttatttcttgtgggtgtagtgaaatgcttgtgcatctAGCTCTGACAGcccagtagtatctaacaaattacacgtATACACACCGGTAGGAGTGACTTAAGACTATTGTTCAGTAATTTTGTAATCGATGTTCATAAATTCCAATTATCTGTCTGATACCCAGAGGTTGTAAAGTTCTGGTCTTAAATAAAAAAACTTAATTCCCAGCTCA
>TU868923
ggaagaggtagAACATAACTTAGAGGGAGACACCCAGTGAATCCCTTGGAAGAGTGCAGAAGACCATCATGGCGCTATTGACTGTCATTCTGCTTGTCAGCACAGCTTTTTCTCTGGGAGATGCTACGAAAGGACCCAAGACCCCCCGTGAACCTCCTATAAATACTGTGAAAAATGGCCCGCCTGGAGACTACGGCTCCACGTGCGACTGCCAGGGAGAATACGCTCCTGAGCACCACTGGGGCTCTACAGGTTCCTCTTCGTGTCTTACCAGAACTGGATGGACTATCCCGGAAACTCATCCTGGCACTGCACCAATCAAATGTGCATGCAGTGGTGCTTGCAGATGAAAGGTGTTGGAAGAGAAGACTGCGAAATACATTGCTGGGTTGTCTTTACTGTACTATGGGAGCAGACTCACGTTCCGTATACATGAAGAGATCCAGAGATACGATTGTTGCATTACATCCTTTATTGGTTTGATTTGCCGAACGTTTTAGCTGAGCGTTTCTGGGACATGGAGGAATGACTTGGGCGACTATGATGACCCGTATGACCACCACACGTGTCAtaaaggcagtcaaattccatgtgaccacTTCGTCATGGTAACTGGGCTTTAACAAGCTATTGTGCTGCTGATGGTCATGAGTAGTCTACTGTACTTCCTGGTACTCGGCACTTTATTGCCCTCTAATCACTAGCAATGTAATTGCAAATCAACTATTGATCATTGTACATGTGATtagcagattttttttatttcttgtgggtgtagtgaaatgcttgtgcatctAGCTCTGACAGcccagtagtatctaacaaattacacgtATACACACCGGTAGGAGTGACTTAAGACTATTGTTCAGTAATTTTGTAATCGATGTTCATAAATTCCAATTATCTGTCTGATACCCAGAGGTTGTAAAGTTCTGGTCTTAAATAAAAAAACTTAATTCCCAGCT

Function

NR:

description
PREDICTED: saxiphilin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474651.2 False 1047 mRNA 0.45 5 2922428 2925281
TU868923 True 968 lncRNA 0.45 5 2922430 2925204

Neighbor

gene id symbol gene type direction distance location
LOC110531340 LOC106578174 coding downstream 8718 2886572 ~ 2913710 (-)
LOC110531336 LOC106593060 coding downstream 47339 2870767 ~ 2875089 (-)
LOC110531335 LOC106593060 coding downstream 61073 2858759 ~ 2861355 (-)
LOC110531328 LOC106578170 coding downstream 98331 2813395 ~ 2824097 (-)
LOC110518027 LOC106599962 coding downstream 133991 2727465 ~ 2788437 (-)
LOC110531347 NA coding upstream 32026 2957307 ~ 2958552 (-)
LOC110531341 NA coding upstream 61530 2986811 ~ 3004194 (-)
LOC110531321 tec coding upstream 88881 3014162 ~ 3057472 (-)
abcg2 abcg2 coding upstream 184749 3110030 ~ 3143404 (-)
LOC110532888 abcg2 coding upstream 241407 3166688 ~ 3202278 (-)
G763844 NA non-coding downstream 5165 2917055 ~ 2917263 (-)
G763840 NA non-coding downstream 19587 2901707 ~ 2902841 (-)
G763833 NA non-coding downstream 56151 2865892 ~ 2866277 (-)
G763825 NA non-coding downstream 67016 2853985 ~ 2855412 (-)
G763817 NA non-coding downstream 85886 2835890 ~ 2836542 (-)
G763806 NA non-coding upstream 36473 2961754 ~ 2962681 (-)
G763859 NA non-coding upstream 42559 2967840 ~ 2968318 (-)
G763862 NA non-coding upstream 54767 2980048 ~ 2982179 (-)
G763864 NA non-coding upstream 59733 2985014 ~ 2985333 (-)
G763853 NA non-coding upstream 75144 3000425 ~ 3001636 (-)
G763719 NA other downstream 435527 2473098 ~ 2486901 (-)
G763587 NA other downstream 944197 1962973 ~ 1978231 (-)
G762459 NA other downstream 2055996 861374 ~ 866432 (-)
G762118 NA other downstream 2485928 429600 ~ 436500 (-)
G762116 NA other downstream 2623909 293672 ~ 298519 (-)
G763961 NA other upstream 371021 3286243 ~ 3299103 (-)
LOC110498423 LOC105006500 other upstream 926690 3851852 ~ 3901549 (-)
LOC118966151 LOC106587785 other upstream 1088553 4012152 ~ 4033537 (-)
G765059 NA other upstream 1365514 4270732 ~ 4319826 (-)
G765100 LOC106597704 other upstream 1521046 4446327 ~ 4536079 (-)

Expression


Co-expression Network