LOC110531347


Basic Information

Item Value
gene id LOC110531347
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 2957307 ~ 2958552 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053094.1
GAAAATTATGTTGAacccaacgtggaatagatgttgaattgacatcttCTCCCTGTGGTAGGGGACTTTTACTCCGAAACAGTCGAATGCTGTATGGCAGaactgggctcctgagtggcgtcactacagtccctggtggtaggtcgtcattgacaataagtatttgttcttattaactgacttgccgagttaaataaagataaaataaatcaaGCCGACTGTCAACTCACCTCCATCCATCTCAAGTCACTTTGGTCCTCTGTTGAGAAGACTAAATCAGCCAATGTGTAATAACCCCAACAACCTAGCTACTCCCCTTCCAGTCCTTCCAACCAAAAgtgtatagggaataaggtgctatatGGGATGCATTCGAGGGTCTGTGACTGACACAACAGGTATCTGGTGATATAGCGCGCATCACATAGGAAACACAGTCACAACAGGTGGACAGCTTTAGTGACTTCATGGCCCAGAGAAAACAGGTGTCTGGTGATATAGCGCGCATCACATAGGAAACACAGTCACAACAGGTGGACAGCTTTAGTGACTTCATGGCCCAGAGAAAACAGGTGTCTGGTGATATAGCGCGCATCACATAGGAAACACAGTCACAACAGGTGGACAGCTTTAGTGACTTCATGGCCCAGAGAAAACAGGTGTCTGGTGATATAGCGCGCATCACATAGGAAACACAGTCACAACAGGTGGACAGCTTTAGTGACTTCATGGCCCAGAGAAAACAGGTATCTGGTGATATAGCGCGCATCACATAGGAAACACAGTCACAACAGGTGGACAGCTTTAGTGACTTCATGGCCCAGAGAAAACAGGTATCTGGTGATATAGCGCGCATCACATAGGAAACACAGTCACAACAGGCCTATAAAACAACAAGCATCTGtaacaccaccatcatcattacaacgcAGGTTGACGTTTGTTGTCGTGAATCTTGCCtcggaggcagaactgagcgatttccactagacggaccagctgcaaagtcaaaattgcctatatatacacacatatataaataatttaaggttaggcattaaggtTTTCAATGTGCTTAAGGTTAAGTTCGAAACTCAGatgttatgactttgtggctggtgaccattctgcagagctgcctccagaacaacatTCATGC

Function

NR:

description
gastrula zinc finger protein XlCGF57.1-like isoform X24

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053094.1 True 1159 mRNA 0.45 2 2957307 2958552

Neighbor

gene id symbol gene type direction distance location
LOC110531345 NA coding downstream 32026 2922428 ~ 2925281 (-)
LOC110531340 LOC106578174 coding downstream 43597 2886572 ~ 2913710 (-)
LOC110531336 LOC106593060 coding downstream 82218 2870767 ~ 2875089 (-)
LOC110531335 LOC106593060 coding downstream 95952 2858759 ~ 2861355 (-)
LOC110531328 LOC106578170 coding downstream 133210 2813395 ~ 2824097 (-)
LOC110531341 NA coding upstream 28259 2986811 ~ 3004194 (-)
LOC110531321 tec coding upstream 55610 3014162 ~ 3057472 (-)
abcg2 abcg2 coding upstream 151478 3110030 ~ 3143404 (-)
LOC110532888 abcg2 coding upstream 208136 3166688 ~ 3202278 (-)
LOC110531332 LOC106578195 coding upstream 264412 3222964 ~ 3248776 (-)
G763844 NA non-coding downstream 40044 2917055 ~ 2917263 (-)
G763840 NA non-coding downstream 54466 2901707 ~ 2902841 (-)
G763833 NA non-coding downstream 91030 2865892 ~ 2866277 (-)
G763825 NA non-coding downstream 101895 2853985 ~ 2855412 (-)
G763806 NA non-coding upstream 3202 2961754 ~ 2962681 (-)
G763859 NA non-coding upstream 9288 2967840 ~ 2968318 (-)
G763862 NA non-coding upstream 21496 2980048 ~ 2982179 (-)
G763864 NA non-coding upstream 26462 2985014 ~ 2985333 (-)
G763853 NA non-coding upstream 41873 3000425 ~ 3001636 (-)
G763719 NA other downstream 470406 2473098 ~ 2486901 (-)
G763587 NA other downstream 979076 1962973 ~ 1978231 (-)
G762459 NA other downstream 2090875 861374 ~ 866432 (-)
G762118 NA other downstream 2520807 429600 ~ 436500 (-)
G762116 NA other downstream 2658788 293672 ~ 298519 (-)
G763961 NA other upstream 337750 3286243 ~ 3299103 (-)
LOC110498423 LOC105006500 other upstream 893419 3851852 ~ 3901549 (-)
LOC118966151 LOC106587785 other upstream 1055282 4012152 ~ 4033537 (-)
G765059 NA other upstream 1332243 4270732 ~ 4319826 (-)
G765100 LOC106597704 other upstream 1487775 4446327 ~ 4536079 (-)

Expression


Co-expression Network