LOC110532886 (LOC106578200)


Basic Information

Item Value
gene id LOC110532886
gene name LOC106578200
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 3484868 ~ 3493772 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987079.1
CCTCTattcagggcctgatttagacctgggacaccaggtgggtgattctcctctaatcggggactgatttagatCTTGGACACCGGGTGGGTAATTCCcctctaatcggggactgatttagacctgggaaaccggttgggtgattcccctctaatcagagaCTGATTTAGTGATTCCCCTCTactcagggcctgatttagacctgggttATATTAGTAATCAGGTAGAAGTGAAAACTGCAGAgttcgtagggtcagagttgaatacctacagtatgttggTTTCATCTAATATGAGGATACAGAGGAGCCGAGGAGAAGTGACTATAGTCTACTAAGAGACAGCCCAGCTAGTGGTTTGTGGTCTGTGACTCAATTCCTGTCAGAGAGAGACGCTGAGGAGAAAAAGACTTTACTTTCGTCTCTACACGTGTGACAGACTTGGTACTGTCCAAACCCATAAGGTGATAAATCATCAATATGCCATCGATCTGCATTCAGATCTATGTCCTGGGCCTCCTGGTGCTGATGGGGTCCAGAGCAGAGGAAGTTTCTGTTGAAGGCAGCATATCCAACAACTCCACCTCCACCCCTACTGATACCCCCTCTACAGCCAGCCTGAGCCCCTCTACAGCCAGCCTGACCTCCTCTACAGCCAACCTGACCCCCTCTACAGCCAACCTGAGCCCCTCTACAGCCAGCCTGACCCCCTCTACAGCCAGCCTGACCCCCTCTACAGCCAGCCTGACCCCCTCTACAGCCAACCTGACCCCCTCTACAGCCCACCTGTCCCCCTCTACAGCCCACCTGTCCCCCTCTACAGCCAGCCTGACCCCCTCTACAGCCAACCAGACCGCCCAGACTACATCGTCAGGGTTGACAGCCCTCAGCCAATCACAGGGCAGGGAGACCACTGCGACCACGGAAACCACAACATCATTACCAGCTACAAGGGGAAGTGACATTGCAGgcTATGTAATCCTGTTTCTCATATTGTTGGCTGTTGTGTGTCTGGTGGTGATTCTCTATATCCTGAGGAAGAAGTCCAGGAGGTACTCGTTTGATCTGCAGTATCCAGGTTATGACCACGACACCCCCCTCACCTGCATGGAACAACCCGGAACCTTCGAACCCAACAATGATCAGGAGATCTGGGAgtctgagagagagggtggtgatGAGGATCCCCATGCTATGAGCCCTGTAGCTAACGGCTCAGCTATGGGGGCTGGAGAGACTGGCTCTACAGGGGAGAACGAAGGAGAGAAGCAGGCTCATGGTGATAGTGATGGAGACAGCTTCAACAACTTCTGTGCCAGTGATGTCACTCCGCCCATAAAAAGGGTTGGCTTTAGCCTGGACCTCGACCTGAGTGACAAGGTGTTACTCGGCTCCAGCCCTGACCTTTGACCCTTGAGTGACATGGTGTTACTCGGCTCCGGCCCTGACCTTCGACCCTGTATGTCCAGATAACGTCTTCACCGAGATCAAGATGTACATAGCACCTTTATTTGATCTATAAAATGTCAGAATGTAAACGGCTCCAAATCAGTTTTTACTTTCCTATTTCTGATACTGTAattcattttaataatgtttttTGAGCGTGACAATACCAAGAGAGCGATGCCACGTGGttttagaataaaaaaaataaaagtactTAACAGAGGA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106578200

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987079.1 True 1673 mRNA 0.50 7 3484868 3493772

Neighbor

gene id symbol gene type direction distance location
LOC110518889 NA coding downstream 76802 3345683 ~ 3408066 (-)
rnf150b LOC106527319 coding downstream 147119 3302114 ~ 3337749 (-)
si:ch211-149b19.2 LOC106578193 coding downstream 219239 3260377 ~ 3265629 (-)
LOC110531332 LOC106578195 coding downstream 236092 3222964 ~ 3248776 (-)
LOC110532888 abcg2 coding downstream 282590 3166688 ~ 3202278 (-)
anapc10 anapc10 coding upstream 5849 3499621 ~ 3510559 (-)
otud4 LOC106578201 coding upstream 24939 3518711 ~ 3562700 (-)
LOC110531324 znf827 coding upstream 93377 3587149 ~ 3610560 (-)
LOC118966149 znf827 coding upstream 116376 3610148 ~ 3628340 (-)
slc10a7 LOC106591891 coding upstream 142366 3636138 ~ 3663572 (-)
G764327 NA non-coding downstream 2000 3477613 ~ 3482868 (-)
G764323 NA non-coding downstream 13018 3467530 ~ 3471850 (-)
G764311 NA non-coding downstream 33945 3450654 ~ 3450923 (-)
G764310 NA non-coding downstream 34642 3449997 ~ 3450226 (-)
G764308 NA non-coding downstream 36460 3448163 ~ 3448408 (-)
G764330 NA non-coding upstream 443 3494215 ~ 3494522 (-)
G764331 NA non-coding upstream 3317 3497089 ~ 3497591 (-)
G764339 NA non-coding upstream 44837 3538609 ~ 3538820 (-)
G764342 NA non-coding upstream 52973 3546745 ~ 3547054 (-)
G763961 NA other downstream 185765 3286243 ~ 3299103 (-)
G763719 NA other downstream 997967 2473098 ~ 2486901 (-)
G763587 NA other downstream 1506637 1962973 ~ 1978231 (-)
G762459 NA other downstream 2618436 861374 ~ 866432 (-)
G762118 NA other downstream 3048368 429600 ~ 436500 (-)
LOC110498423 LOC105006500 other upstream 358199 3851852 ~ 3901549 (-)
LOC118966151 LOC106587785 other upstream 520062 4012152 ~ 4033537 (-)
G765059 NA other upstream 797023 4270732 ~ 4319826 (-)
G765100 LOC106597704 other upstream 952555 4446327 ~ 4536079 (-)
LOC110515555 NA other upstream 1081073 4574163 ~ 4575872 (-)

Expression


Co-expression Network