ttc29 (LOC106578209)


Basic Information

Item Value
gene id ttc29
gene name LOC106578209
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 3667268 ~ 3699007 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987089.1
aagagtgtgagagagagacagacagagacagccacacacacagttccCCCAAAATAGAGTAGGCTTTTGTTACATTTGGCAGCCTGTAATAAACATACTCTCCCTCCCATGTCCCATGGGTCAACGTTTTGTAAGTGATTCGTCTTtctatgtgatttttttttcaaaGAAGAAAACAATTAGGAAGAGATCGAGGGAGGCAGTTCAACAGTATTGGAACAAGGCCAAAAGTGTAGAACTTTCCTTGCGTTCCCGGAAGTGTTGCTATAGCGACTGCCTCGGCTGGATCAACGCACAGAGAAAAACCCGGATTTGATCAGGAAAGTTTTCGAACTTTTTTTTTGAAAAGTGTCCTAAACTACTTTTACAATATCGTTAACAGCTTAGGTTTCAATTTCCGAATTATAATGCAAAAGCGGTCTAATTTCAAAATTACAACATTGATTGGATAAATCCACGTTTTCATACTTTGGGCAAAATTAACTGGAGAGGATGAGTGCAGAATTCACACCGAGACAAAAAGTGACCTTCCTACCAGACATCAACAAACCGGGCCAAGAGCGGACCAGTCCAAGGTCCAGGATGCAGAAGAAGGGAAAAGAGACTGAAACAGCTCAGCCTGCAAGAAGCCAGACCCCAACAGTTTCCAAGGATGAAATCGCCCTGTTCCGTAACAGCGTGAGACAGAACGCCTGTGTAGAGATGCTGCGTGGAGGGTTCCACagGTCATTCTCTGAgctattctctctgctacagcgCTGGAAGGAGATCAGGTTAGCAGCAGGTCCTGGATCAGCTATCTGGCAGCATAAATCACTGGAGGAGCAGCCAGCCAAACTACACACCCTACGACACTacctgactaaggctgagacagctctcagagcagGTGCGTGGAGTGCTGTGTACGACCAGCAGGTGTTTTTGGCCCAGTACTTCAGAGAGCCAGAGGACAGGTGGTTGTCCTGCCACTTCTACCAGACCAGCCTGAACTCGGCCCGCAGGGTcaagatagatggagggaggaaggaggctGAGGCTTTAGCTAACATGGGACAAGTCTACATGgagcaaggtCAGTTAGACAGTGCCAGGGAGCAGTATGAGTGTTTCTACCAGCTGACAGCAGGGCGGGCATGGCGCAGCGAGGGGGGCAGGTCTCTCCACTGCCAGGCCTGTGAGGGTCTCTGGAGGGTGTACACCCAGCTGGCAGACAGACCACTACAGGCTAACGACTACAGAGCTGCTATAGACACGCTGAGCAAGGCCTTCCAGATGGCCAAGGAAGcTGGAGACCATAGAATCGAGGGGGAGGCGGCCTACCGTGTGGGTCTGGCCTATCAGTGTGTCGGCGACCAGGTGACAGCCAAGCGCTTCCTGAACATGTACATGGAGATGTCAACAGCCCTGGGGGACGCAGGAGGACTGGGGAAGGCCTATAAAGCCATAGCCAAGTCCCTGGAGAGtgaGGGGAAGCTGAGTGAAACGGTCCAGTATCTGGAGAAGTTTGCAGAGGTTTCCCAGGGCAACAACCAATACCACAACCTAGAGGAAGCATGCATGTGTCTAGGAGTCATCTTCAACTCTagaGGTCAGTACGAAAGAGGCTGTACGTACTTTGAACGGGGGTACGAGATCGCCCGTGACCTGGGGGAGGTCCCcctgctccagagggctcagGTGTTTGTGGGTAGTGCCCGTGCCTACAGTATGATCAGGAAGTACAGTCGTTCCATTGAGACGGCGTCACACAGTGACCTGCTACTCCTGACCGGCTGGAAGGAGAGCAGGCAGAACGTATTTACTGATACAACAGGATCAGCAGAGGGAAAaatatgaggaggaggaggaggaagaggaggaccagaGGAGAAGATGAAGTGCTCTTATCACCGcgttgataataataataaaacaaatctaACTCTCTTCATA
>XM_036987090.1
aagagtgtgagagagagacagacagagacagccacacacacagttccCCCAAAATAGAGTAGGCTTTTGTTACATTTGGCAGCCTGTAATAAACATACTCTCCCTCCCATGTCCCATGGGTCAACGTTTTGTAAGTGATTCGTCTTtctatgtgatttttttttcaaaGAAGAAAACAATTAGGAAGAGATCGAGGGAGGCAGTTCAACAGTATTGGAACAAGGCCAAAAGTGTAGAACTTTCCTTGCGTTCCCGGAAGTGTTGCTATAGCGACTGCCTCGGCTGGATCAACGCACAGAGAAAAACCCGGATTTGATCAGGAAAGTTTTCGAACTTTTTTTTTGAAAAGTGTCCTAAACTACTTTTACAATATCGTTAACAGCTTAGGTTTCAATTTCCGAATTATAATGCAAAAGCGGTCTAATTTCAAAATTACAACATTGATTGGATAAATCCACGTTTTCATACTTTGGGCAAAATTAACTGGAGAGGATGAGTGCAGAATTCACACCGAGACAAAAAGTGACCTTCCTACCAGACATCAACAAACCGGGCCAAGAGCGGACCAGTCCAAGGTCCAGGATGCAGAAGAAGGGAAAAGAGACTGAAACAGCTCAGCCTGCAAGAAGCCAGACCCCAACAGTTTCCAAGGATGAAATCGCCCTGTTCCGTAACAGCGTGAGACAGAACGCCTGTGTAGAGATGCTGCGTGGAGGGTTCCACagGTCATTCTCTGAgctattctctctgctacagcgCTGGAAGGAGATCAGGTTAGCAGCAGGTCCTGGATCAGCTATCTGGCAGCATAAATCACTGGAGGAGCAGCCAGCCAAACTACACACCCTACGACACTacctgactaaggctgagacagctctcagagcagGTGCGTGGAGTGCTGTGTACGACCAGCAGGTGTTTTTGGCCCAGTACTTCAGAGAGCCAGAGGACAGGTGGTTGTCCTGCCACTTCTACCAGACCAGCCTGAACTCGGCCCGCAGGGTcaagatagatggagggaggaaggaggctGAGGCTTTAGCTAACATGGGACAAGTCTACATGgagcaaggtCAGTTAGACAGTGCCAGGGAGCAGTATGAGTGTTTCTACCAGCTGACAGCAGGGCGGGCATGGCGCAGCGAGGGGGGCAGGTCTCTCCACTGCCAGGCCTGTGAGGGTCTCTGGAGGGTGTACACCCAGCTGGCAGACAGACCACTACAGGCTAACGACTACAGAGCTGCTATAGACACGCTGAGCAAGGCCTTCCAGATGGCCAAGGAAGcTGGAGACCATAGAATCGAGGGGGAGGCGGCCTACCGTGTGGGTCTGGCCTATCAGTGTGTCGGCGACCAGGGTCAGTACGAAAGAGGCTGTACGTACTTTGAACGGGGGTACGAGATCGCCCGTGACCTGGGGGAGGTCCCcctgctccagagggctcagGTGTTTGTGGGTAGTGCCCGTGCCTACAGTATGATCAGGAAGTACAGTCGTTCCATTGAGACGGCGTCACACAGTGACCTGCTACTCCTGACCGGCTGGAAGGAGAGCAGGCAGAACGTATTTACTGATACAACAGGATCAGCAGAGGGAAAaatatgaggaggaggaggaggaagaggaggaccagaGGAGAAGATGAAGTGCTCTTATCACCGcgttgataataataataaaacaaatctaACTCTCTTCATA

Function

NR:

description
PREDICTED: tetratricopeptide repeat protein 29 isoform X1

GO: NA

KEGG:

id description
K24937 TTC29; tetratricopeptide repeat protein 29

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987089.1 False 1935 mRNA 0.50 12 3667268 3699007
XM_036987090.1 True 1704 mRNA 0.50 10 3667268 3699007

Neighbor

gene id symbol gene type direction distance location
slc10a7 LOC106591891 coding downstream 3696 3636138 ~ 3663572 (-)
LOC118966149 znf827 coding downstream 38928 3610148 ~ 3628340 (-)
LOC110531324 znf827 coding downstream 56708 3587149 ~ 3610560 (-)
otud4 LOC106578201 coding downstream 104568 3518711 ~ 3562700 (-)
anapc10 anapc10 coding downstream 156709 3499621 ~ 3510559 (-)
LOC118966150 LOC106592473 coding upstream 38522 3737529 ~ 3740373 (-)
LOC110532885 LOC106578205 coding upstream 87925 3786746 ~ 3857538 (-)
LOC118965970 NA coding upstream 113924 3812931 ~ 3813910 (-)
LOC110498423 LOC105006500 coding upstream 152845 3851852 ~ 3901549 (-)
LOC110498424 LOC106578213 coding upstream 204114 3903081 ~ 3946551 (-)
G764396 NA non-coding downstream 4393 3662453 ~ 3662875 (-)
G764392 NA non-coding downstream 21390 3645606 ~ 3645878 (-)
G764389 NA non-coding downstream 23842 3642019 ~ 3643426 (-)
G764391 NA non-coding downstream 24401 3640258 ~ 3642867 (-)
G764390 NA non-coding downstream 26314 3639615 ~ 3640954 (-)
G764413 NA non-coding upstream 12816 3711823 ~ 3712025 (-)
G764414 NA non-coding upstream 13087 3712094 ~ 3713751 (-)
G764410 NA non-coding upstream 24779 3723786 ~ 3725642 (-)
G764427 NA non-coding upstream 29857 3728864 ~ 3730197 (-)
G764431 NA non-coding upstream 38137 3737144 ~ 3737421 (-)
G763961 NA other downstream 368165 3286243 ~ 3299103 (-)
G763719 NA other downstream 1180367 2473098 ~ 2486901 (-)
G763587 NA other downstream 1689037 1962973 ~ 1978231 (-)
G762459 NA other downstream 2800836 861374 ~ 866432 (-)
G762118 NA other downstream 3230768 429600 ~ 436500 (-)
LOC118966151 LOC106587785 other upstream 314827 4012152 ~ 4033537 (-)
G765059 NA other upstream 591788 4270732 ~ 4319826 (-)
G765100 LOC106597704 other upstream 747320 4446327 ~ 4536079 (-)
LOC110515555 NA other upstream 875838 4574163 ~ 4575872 (-)

Expression


Co-expression Network