LOC118966150 (LOC106592473)


Basic Information

Item Value
gene id LOC118966150
gene name LOC106592473
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 3737529 ~ 3740373 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989231.1
ATGTTCGGCACCGAGGGTTCAGCACCACGGGCCGTGCACGGCTCTACAACCTTAACCTATAAGGGTCCAGAACCACAGGCCGTGCAGGGCTCTACAACCTTAACCTATAAGGGCCCAGAACCACAGGCCGTGCACGGCTCTACAACCTTAACCTATAAGGGCCCAGAACCACAGGCCGTGCACGGCTCTACAACCTTAACctataagggttcagaaccacaggCCGTGCACGGCTCTACAACCTTAACctataagggttcagaaccacaggCCGTGCACGGCTCTACAACCTTAACctataagggttcagaaccacaggCCGTGCACGGCTCTACAACCTTAACCTATAAGGGCCCAGAACCACAGGCCGTGCACGGCTCTACAACCTTAACCTATAAGGGCCCAGAACCACAGGCCGTGCACGGCTCTACAACCTTAACCTATAAGGGTCCAGAACCACAGGCCGTGCACGGCTCTACAACCTTAACCTATAAGGGTCCAGAACCACAGGCCGTGCACGGCTCTACAACCTTAACCTATAAGGGTCCAGAACCACAGGCCGTGCACGGCTCTACAACCTTAACCTATAAGGGTCCAGAACCACAGGCCGTGCACTGCTCTACAACCTTAACCTATAAGGGTCCAGAACCACAGGCCGTGCACGGCTCTACAACCTTAACCTATAAGGGTCCAGAACCACAGGCCGTGCACGGCTCTACAACCTTAACCTATAAGGGTCCAGAACCACAGGCCGTGCAGGGCTCTACAACCTTAACCTATAAGGGTCCAGAACCACAGGCCGTGCACGGCTCTACAACCTTAACCTATAAGGGTCCAGAACCACAGGCTGTGCACGGCTCTACAACCTTAACctataagggttcagaaccatgGAGAACGCTGGATTTAGGATACATCGCAacaatctctccttcctcctga
>TU869873
CCAGTTCATCCATAGAAGTGATCTTCTTGATCCCGTCCACCGTATAGATGGCGCGCACGCCCTGAGGCAGGTGCAGGTTGTCCGCCAGGGACCGGGTCAGCTCCATCAGCAGCGCATCATATGACCGGAACCTGTCGTTAGAGACCGCATACACGAGTCCCTTGAAATACCTGTCCCCATTCCGGTAGAACCTGACCTTCTTGGCACGTTTCTCTGAGGTGAGTGTCTGCAGCGTGCGCGTGCGGTAGTAGCTGCAGTTGGCGCTGTGCGCGGGGCTTGGCACCAGGCTGCTGCCTCTCGAACCGGATCCCCCGCCGGTAGAAGCACCAGTGGAGCGAGTGGATCGGCTACGACGAGCCTTGTCCCGTTCATCGAAATGTTCCAGCTCGATAGTCTTGTTGAGAGACATCGCGGTTACCGTTAACTATGGATTCACACAGATTCACAGTTCTTTTCTCCCGGTTACCGAATCTTTTATTCCATTGTCATCATCAGCATGTGGTAGAATGAAAAGGGATCCTGGTAGCAGCCTAACCGTCCATCTATTCACGATAATCACAACTCGTCAGTCAACATCCTCTTATAATAGGTTACACCGGGCATGGTCTGTAGCCTAGCGATTACCGGTTCCTTGATAACCCACTggtgctgctcctgctgctgctgctacgtgAGCATGTTCGGTTGGCGGTTTTACTGTAGCCAATAGCGGTCCAGCCCTCCTCCGaaggtctgtctgtccgtctgtctgtctgccgctgggctgggctgggctgggctgggcggTGATGATGAGGTGcgtatagagagagaaaagagatccAGCAACGTCACACCAGCATCTTACTgtagcatcatcatcatcatcatcatcatctgtccGGTCTATTGTAGCGTGATGCTGAAGAAACGGTGTAGGCTATTTTCTAACCTATCAATACACCACTCTAGAGTGCATCCCACGTCCACATGACAGGCAACTTCCTTGTAGACTAAATGGAGAAATTGTAGGTTCATTCTATAATCAAACGTTGTAGCCTAGGACATTGTTCTCCGTCTAGAAAGTATATGTTGAACTAGAATAGATGAATACTAGGACATTGATTTGTCTTGGACTGTGGATTAACAGCGGATGTGTCTTCACGGTGGGAATCGGTTGCTATGGGCTCGCTCTGCCACGTCTGGTTCGATATTCCTGGGATTCGCGAGTGttataaaaaaaaagaaggaatCCAGGAATCCCGAATAATCCAAATTTAGGAAGCAGAAACGTCACCAACCAACCATCGATGTTTTAATTTCATTCCGGGCGTGCGACAATTTCTACGTTCTGCACACGCGCGATCGGTGCCCAACGAGACAGCGTGGCtgcggagagagcgagacagagacaaagagcgtCCTGCGTGATTATCACAACCCAGTC
>TU869874
CCAGTTCATCCATAGAAGTGATCTTCTTGATCCCGTCCACCGTATAGATGGCGCGCACGCCCTGAGGCAGGTGCAGGTTGTCCGCCAGGGACCGGGTCAGCTCCATCAGCAGCGCATCATATGACCGGAACCTGTCGTTAGAGACCGCATACACGAGTCCCTTGAAATACCTGTCCCCATTCCGGTAGAACCTGACCTTCTTGGCACGTTTCTCTGAGGTGAGTGTCTGCAGCGTGCGCGTGCGGTAGTAGCTGCAGTTGGCGCTGTGCGCGGGGCTTGGCACCAGGCTGCTGCCTCTCGAACCGGATCCCCCGCCGGTAGAAGCACCAGTGGAGCGAGTGGATCGGCTACGACGAGCCTTGTCCCGTTCATCGAAATGTTCCAGCTCGATAGTCTTGTTGAGAGACATCGCGGTTACCGTTAACTATGGATTCACACAGATTCACAGTTCTTTTCTCCCGGTTACCGAATCTTTTATTCCATTGTCATCATCAGCATGTGGTAGAATGAAAAGGGATCCTGGTAGCAGCCTAACCGTCCATCTATTCACGATAATCACAACTCGTCAGTCAACATCCTCTTATAATAGGTTACACCGGGCATGGTCTGTAGCCTAGCGATTACCGGTTCCTTGATAACCCACTggtgctgctcctgctgctgctgctacgtgAGCATGTTCGGTTGGCGGTTTTACTGTAGCCAATAGCGGTCCAGCCCTCCTCCGaaggtctgtctgtccgtctgtctgtctgccgctgggctgggctgggctgggctgggcggTGATGATGAGGTGcgtatagagagagaaaagagatccAGCAACGTCACACCAGCATCTTACTgtagcatcatcatcatcatcatcatcatctgtccGGTCTATTGTAGCGTGATGCTGAAGAAACGGTGTAGGCTATTTTCTAACCTATCAATACACCACTCTAGAGTGCATCCCACGTCCACATGACAGGCAACTTCCTTGTAGACTAAATGGAGAAATTGTAGGTTCATTCTATAATCAAACGTTGTAGCCTAGGACATTGTTCTCCGTCTAGAAAGTATATGTTGAACTAGAATAGATGAATACTAGGACATTGATTTGTCTTGGACTGTGGATTAACAGCGGATGTGTCTTCACGGTGGGAATCGGTTGCTATGGGCTCGCTCTGCCACGTCTGGTTCGATATTCCTGGGATTCGCGAGTGttataaaaaaaaagaaggaatCCAGGAATCCCGAATAATCCAAATTTAGGAAGCAGAAACGTCACCAACCAACCATCGATGTTTTAAT
>TU869875
CCAGTTCATCCATAGAAGTGATCTTCTTGATCCCGTCCACCGTATAGATGGCGCGCACGCCCTGAGGCAGGTGCAGGTTGTCCGCCAGGGACCGGGTCAGCTCCATCAGCAGCGCATCATATGACCGGAACCTGTCGTTAGAGACCGCATACACGAGTCCCTTGAAATACCTGTCCCCATTCCGGTAGAACCTGACCTTCTTGGCACGTTTCTCTGAGGTGAGTGTCTGCAGCGTGCGCGTGCGGTAGTAGCTGCAGTTGGCGCTGTGCGCGGGGCTTGGCACCAGGCTGCTGCCTCTCGAACCGGATCCCCCGCCGGTAGAAGCACCAGTGGAGCGAGTGGATCGGCTACGACGAGCCTTGTCCCGTTCATCGAAATGTTCCAGCTCGATAGTCTTGTTGAGAGACATCGCGGTTACCGTTAACTATGGATTCACACAGATTCACAGTTCTTTTCTCCCGGTTACCGAATCTTTTATTCCATTGTCATCATCAGCATGTGGTAGAATGAAAAGGGATCCTGGTAGCAGCCTAACCGTCCATCTATTCACGATAATCACAACTCGTCAGTCAACATCCTCTTATAATAGGTTACACCGGGCATGGTCTGTAGCCTAGCGATTACCGGTTCCTTGATAACCCACTggtgctgctcctgctgctgctgctacgtgAGCATGTTCGGTTGGCGGTTTTACTGTAGCCAATAGCGGTCCAGCCCTCCTCCGaaggtctgtctgtccgtctgtctgtctgccgctgggctgggctgggct

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989231.1 False 942 mRNA 0.54 2 3737529 3739697
TU869873 False 1426 lncRNA 0.51 1 3738948 3740373
TU869874 False 1299 lncRNA 0.50 1 3739075 3740373
TU869875 True 775 lncRNA 0.55 1 3739599 3740373

Neighbor

gene id symbol gene type direction distance location
ttc29 LOC106578209 coding downstream 38522 3667268 ~ 3699007 (-)
slc10a7 LOC106591891 coding downstream 73957 3636138 ~ 3663572 (-)
LOC118966149 znf827 coding downstream 109189 3610148 ~ 3628340 (-)
LOC110531324 znf827 coding downstream 126969 3587149 ~ 3610560 (-)
otud4 LOC106578201 coding downstream 174829 3518711 ~ 3562700 (-)
LOC110532885 LOC106578205 coding upstream 47235 3786746 ~ 3857538 (-)
LOC118965970 NA coding upstream 73234 3812931 ~ 3813910 (-)
LOC110498423 LOC105006500 coding upstream 112155 3851852 ~ 3901549 (-)
LOC110498424 LOC106578213 coding upstream 163424 3903081 ~ 3946551 (-)
LOC110513230 LOC106578212 coding upstream 209371 3947831 ~ 3967328 (-)
G764431 NA non-coding downstream 108 3737144 ~ 3737421 (-)
G764427 NA non-coding downstream 7332 3728864 ~ 3730197 (-)
G764410 NA non-coding downstream 11887 3723786 ~ 3725642 (-)
G764414 NA non-coding downstream 23778 3712094 ~ 3713751 (-)
G764413 NA non-coding downstream 25504 3711823 ~ 3712025 (-)
G764434 NA non-coding upstream 5863 3745560 ~ 3745764 (-)
G764435 LOC106592473 non-coding upstream 7931 3747628 ~ 3748479 (-)
G764438 NA non-coding upstream 12189 3751886 ~ 3766126 (-)
G764439 NA non-coding upstream 12733 3752430 ~ 3781679 (-)
G763961 NA other downstream 438426 3286243 ~ 3299103 (-)
G763719 NA other downstream 1250628 2473098 ~ 2486901 (-)
G763587 NA other downstream 1759298 1962973 ~ 1978231 (-)
G762459 NA other downstream 2871097 861374 ~ 866432 (-)
G762118 NA other downstream 3301029 429600 ~ 436500 (-)
LOC118966151 LOC106587785 other upstream 274137 4012152 ~ 4033537 (-)
G765059 NA other upstream 551098 4270732 ~ 4319826 (-)
G765100 LOC106597704 other upstream 706630 4446327 ~ 4536079 (-)
LOC110515555 NA other upstream 835148 4574163 ~ 4575872 (-)

Expression


Co-expression Network