XLOC_026581 (znfl1)


Basic Information

Item Value
gene id XLOC_026581
gene name znfl1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34652144 ~ 34656745 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051780
cttgaagaccgacgggttaacatcactgctgaggaactgcactattcattgtcttcaataaagtcttctctccgtaagaactttggtcagcttacttattttatgtgttagagtaatctaatacattggcgagccccccaagaacggttaagccaaatacagcaaaatctaacaatTTGGCGAAGCCAGCCAGGAGAGACTGAAAAGAGGAAAACTCATCAACTGCAACAAGAAATGAATTGAAGAATCTTGGAGAATCTACAGTTAAAGCTGAAGATAAACGGATTTTGTTTGTGGACGAGTCCTGGATCTACATATTGTATCTGTGGACACCCTTTATTTTAATCAACTGGATCTCATCTCAAAGATCCTAGTTTGAGCACTGTCCTGTACTTCCCATGGCTGAGTCTTCAAGAAACTATGCTAATGGAGCTACCCTGAGAACAACATCAGAAAAACATGGAACAGAACCTCCATGTGTTACCATTGACCAGATGTTGGAGAATTTGAATGCATATTTAGACAAAAGGCTGGGACTGAGGAAGTGTCGTGATGATGTATGCAAGAAGTACAGCATCAAGCACTCAGGGAGTGGATTATGGGCATTGCCGGACATTAAAAGGGCTTATGGAAAGACACAGCGCTTATGCACAACCACCAAGAAGGATGGATTGTCTGTGATTTTGGTTAAGCAAATTCTTCAACATGAGCATAAGTGTGAGACTGACAGATTGGAACGTGAGAACAAAGCGGAGAAAGCTAAAGTTCGAGCACTGGCTGAACAATTGCAAAACTTAAAGGCGCATAAAGAAAGACTGGAAAAGGAAAACAACAAGCTATTGACTTTGATCTCCAAACAGCTGGAATCAAAATCTTCAAGCAGCTTTGTTGACAGTGAGGCTGATCTTTCCATCAACACCTGTGTTCATGACCCAGTGAACTCAAAGATTAGATTAGCTCCTGTGATTGTCAAACACAGAAGGACTAACGTTGAAATTGACAATGAGGAGGGCTATGAAGACAGTGGAGAGAGACGAACTCGCACTGTGACAAAAGTGGTAAAGAAGTATGTTCCATACAGGACATACCATCCAGCTACTCCAGAGCAAGTTGACAAATGGTCAAAAGAGCTGCCAGATGTATACAAACAACCACGAAAGGTTTGGCAGTTTCTTCAACGACTGCAGAAAATCTACATTTTACATCCACTAGATGGTGTGATGATTCTTAATGTCACCCTAAGAGACAGTGACCAAAAGAGACTCACAGAAAGTGTTGAAAGAAGGATTGGTGAATCACAAGAAAACATAGAGGATGGATGGGAAGCCATAAAAAACTTCTTGTTTGAACTGAAACCTGCAGAGGTCAATTGGGCAAGAATTACCTCATGCATGCAGAAAACTGGAGAAAGTGTTGCAGAGTTTGAAGAACGCTTCAGACATATATGGACGGAACATTCTGGTCTGAATACAAGTGAAGATCTTGACAAAGACACTGGAATTCCCCTGAAAACAGCATTTGTCAATGGACTCAATCCTGAGATTTCTAAAGATCTTAAAATCAGGTATGATGACTGGGACAGCACTGTAACAACTTTCATCCAGATTGTTGAATGGTCAGCTAAACTGGAGAGAGCACAAGATGTCAGACTCAGATCTTTGCAATCGAAAAGTTTGTTTTACAAGAACAGAACAATTGAGGATGAGCAAAAAGAACGTGAGTATATGGGATACTCAAAACTACGAACTAAAGGAAGATGCAGAAATTGCAATGAAGAAGGACACTGGGCCCGTGAGTGCAAGCTCAGTTTAAAACATCAAAGCCAAGATGATGACCACCTGTTCAAGCAGTTTCAGCAGCtaacaatacaacaaaaataGACTCTGCTAAATGCTGTACAGCCGCAGGGAAACTGAAGAACCTCTCTCTGCAGCACCAGCTAGTGACGTCTTTTCCAGAAGCTGATGAACTGAATGTGTATGCAAACAATAAGGTAAAAGCTGACACAGAAGTCTCAACAGATGAAGACAAGTTTGATGTCCTAGTAGATGGTGTTGCCAAACAAGCCGTAAAGGAGAGAGGTGAACATACAGCGGCATTAAGACAGCTTCAGAAAGACCACGGATCTTTAGTCTTAGACAGAATGCAGACTGCAAATGAAAAGTCTCCAAAAGAAATGCTGATGGACGATGCACAAGAACTGCGTGATGGCAATCAATGCAGTATGGATGGAAACAGACTATGCCCTTTTGAACATCCCCCAAGCCAGCCCATGTCCACAGAAAACCTGACATCTGACAGCCTTGTCCAAAACAAAGCAAGACTCAGCCTGGCAGTACATGAGGACAATAATCAAGTTTTGTCACCTCTGAAGAGGGGCCATAGTTTAGAGCCCAGTAAATGGGTAAAGACACGACAACCTCAGAAACTACCACTAAAATCCAAGTGGAAGAGCTCACTTGAGAAAGTTTTAGTATCTGATTCAATAATTAATGTTCAGGGACTTGATGAATGGATCAACGTGAGTTTGCCTAGAGACGAGGGATAGATGACAGTAGTGTTTTTCAGAGTCCAGATATGGCGGGACTAGAGTTTTTAGGCTCTAGCTTGTCGCCTGAGGATGAAGACATTAACCACCACTGATAAACACTGTAGTGTCCTGTCAATATTAAATAGGGACAGTTTCTATACTTTCTATAGGCAGTTTGAAAATTTCTCTGAAATCTTTTTCTGGGCAAGATACGTTTCCCTTTTCCCTTTTGTGTGATTGCAGGTGTTCCAGAGGATGACCAGAGACACACAACACCAGACACCTAGATGAACACACCTGAACATCCACAGAACACAACCACATCCTGCTACTTCTACAACATCACAACTTTAAATAGAAATGGACTCAGGCATTTGAGGAAATGCAAGCTTCACCATGACTTCTTATTCTGTCACTTTAAGTTATATAGCCTGTATTGCAGATTTCTGTATACATGATTAACTTGTTTTATGATCAAATATGATCAGAGGAGGGATTGAAagattatgtgcattttagttcagttgcatttacattgattaaactCTGATGTGATATGATGGGGTGACCTGTGCCTCGACCCCCACAAACTGATAGGTGTGAACTAAATGACCCTTTTACAATCTCAATGGGTATTagcaaaacaacagctgaaacatctgaagagggtcctgctgagcctcgtaaacagaatggtttgtttgatgctaatataaagtactgtctcacagacagtactttgagttaagttacttgaagaccgacgggttaacatcactgctgaggaactgcactattcattgtcttcaataaagtcttctctccgtaa
>TCONS_00051781
ccgacgggttaacatcactgctgaggaactgcactattcattgtcttcaataaagtcttctctccgtaagaactttggtcagcttacttattttatgtgttagagtaatctaatacattggcgagccccccaagaacggttaagccaaatacagcaaaatctaacaatTTGGCGAAGCCAGCCAGGAGAGACTGAAAAGAGGAAAACTCATCAACTGCAACAAGAAATGAATTGAAGAATCTTGGAGAATCTACAGTTAAAGCTGAAGATAAACGGATTTTGTTTGTGGACGAGTCCTGGATCTACATATTGTATCTGTGGACACCCTTTATTTTAATCAACTGGATCTCATCTCAAAGATCCTAGTTTGGTGTTCCAGAGGATGACCAGAGACACACAACACCAGACACCTAGATGAACACACCTGAACATCCACAGAACACAACCACATCCTGCTACTTCTACAACATCACAACTTTAAATAGAAATGGACTCAGGCATTTGAGGAAATGCAAGCTTCACCATGACTTCTTATTCTGTCACTTTAAGTTATATAGCCTGTATTGCAGATTTCTGTATACATGATTAACTTGTTTTATGATCAAATATGATCAGAGGAGGGATTGAAagattatgtgcattttagttcagttgcatttacattgattaaactCTGATGTGATATGATGGGGTGACCTGTGCCTCGACCCCCACAAACTGATAGGTGTGAACTAAATGACCCTTTTACAATCTCAATGGGTATTagcaaaacaacagctgaaacatctga
>TCONS_00051782
ATTTGAATGCATATTTAGACAAAAGGCTGGGACTGAGGAAGTGTCGTGATGATGTATGCAAGAAGTACAGCATCAAGCACTCAGGGAGTGGATTATGGGCATTGCCGGACATTAAAAGGGCTTATGGAAAGACACAGCGCTTATGCACAACCACCAAGAAGGATGGATTGTCTGTGATTTTGGTTAAGCAAATTCTTCAACAGATGAAGACAAGTTTGATGTCCTAGTAGATGGTGTTGCCAAACAAGCCGTAAAGGAGAGAGGTGAACATACAGCGGCATTAAGACAGCTTCAGAAAGACCACGGATCTTTAGTCTTAGACAGAATGCAGACTGCAAATGAAAAGTCTCCAAAAGAAATGCTGATGGACGATGCACAAGAACTGCGTGATGGCAATCAATGCAGTATGGATGGAAACAGACTATGCCCTTTTGAACATCCCCCAAGCCAGCCCATGTCCACAGAAAACCTGACATCTGACAGCCTTGTCCAAAACAAAGCAAGACTCAGCCTGGCAGTACATGAGGACAATAATCAAGTTTTGTCACCTCTGAAGAGGGGCCATAGTTTAGAGCCCAGTAAATGGGTAAAGACACGACAACCTCAGAAACTACCACTAAAATCCAAGTGGAAGAGCTCACTTGAGAAAGTTTTAGTATCTGATTCAATAATTAATGTTCAGGGACTTGATGAATGGATCAACGTGAGTTTGC
>TCONS_00052477
TCCCATGGCTGAGTCTTCAAGAAACTATGCTAATGGAGCTACCCTGAGAACAACATCAGAAAAACATGGAACAGAACCTCCATGTGTTACCATTGACCAGATGTTGGAGAATTTGAATGCATATTTAGACAAAAGGCTGGGACTGAGGAAGTGTCGTGATGATGTATGCAAGAAGTACAGCATCAAGCACTCAGGGAGTGGATTATGGGCATTGCCGGACATTAAAAGGGCTTATGGAAAGACACAGCGCTTATGCACAACCACCAAGAAGGATGGATTGTCTGTGATTTTGGTTAAGCAAATTCTTCAACATGAGCATAAGTGTGAGACTGACAGATTGGAACGTGAGAACAAAGCGGAGAAAGCTAAAGTTCGAGCACTGGCTGAACAATTGCAAAACTTAAAGGCGCATAAAGAAAGACTGGAAAAGGAAAACAACAAGCTATTGACTTTGATCTCCAAACAGCTGGAATCAAAATCTTCAAGCAGCTTTGTTGACAGTGAGGCTGATCTTTCCATCAACACCTGTGTTCATGACCCAGTGAACTCAAAGATTAGATTAGCTCCTGTGATTGTCAAACACAGAAGGACTAACGTTGAAATTGACAATGAGGAGGGCTATGAAGACAGTGGAGAGAGACGAACTCGCACTGTGACAAAAGTGGTAAAGAAGTATGTTCCATACAGGACATACCATCCAGCTACTCCAGAGCAAGTTGACAAATGGTCAAAAGAGCTGCCAGATGTATACAAACAACCACGAAAGGTTTGGCAGTTTCTTCAACGACTGCAGAAAATCTACATTTTACATCCACTAGATGGTGTGATGATTCTTAATGTCACCCTAAGAGACAGTGACCAAAAGAGACTCACAGAAAGTGTTGAAAGAAGGATTGGTGAATCACAAGAAAACATAGAGGATGGATGGGAAGCCATAAAAAACTTCTTGTTTGAACTGAAACCTGCAGAGGTCAATTGGGCAAGAATTACCTCATGCATGCAGAAAACTGGAGAAAGTGTTGCAGAGTTTGAAGAACGCTTCAGACATATATGGACGGAACATTCTGGTCTGAATACAAGTGAAGATCTTGACAAAGACACTGGAATTCCCCTGAAAACAGCATTTGTCAATGGACTCAATCCTGAGATTTCTAAAGATCTTAAAATCAGGTATGATGACTGGGACAGCACTGTAACAACTTTCATCCAGATTGTTGAATGGTCAGCTAAACTGGAGAGAGCACAAGATGTCAGACTCAGATCTTTGCAATCGAAAAGTTTGTTTTACAAGAACAGAACAATTGAGGATGAGCAAAAAGAACGTGAGTATATGGGATACTCAAAACTACGAACTAAAGGAAGATGCAGAAATTGCAATGAAGAAGGACACTGGGCCCGTGAGTGCAAGCTCAGTTTAAAACATCAAAGCCAAGATGATGACCACCTGTTCAAGCAGTTTCAGCAGCtaacaatacaacaaaaataGACTCTGCTAAATGCTGTACAGCCGCAGGGAAACTGA

Function

symbol description
znfl1 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Acts upstream of or within hindbrain development. Is expressed in several structures, including margin; mesoderm; neural tube; neuroectoderm; and notochord.

GO:

id name namespace
GO:0030902 hindbrain development biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030828-6 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Acts upstream of or within hindbrain development. Is expressed in several structures, including margin; mesoderm; neural tube; neuroectoderm; and notochord.

Ensembl:

ensembl_id ENSDARG00000037914

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051780 False 3359 mRNA 0.41 2 34652144 34656745
TCONS_00051781 False 790 processed_transcript 0.39 2 34652310 34656737
TCONS_00051782 False 713 processed_transcript 0.43 2 34652972 34654998
TCONS_00052477 True 1522 lncRNA 0.41 1 34653587 34655108

Neighbor

gene id symbol gene type direction distance location
XLOC_026580 NA coding downstream 10171 34641048 ~ 34641973 (-)
XLOC_026579 tac4 coding downstream 27399 34623560 ~ 34624745 (-)
XLOC_026578 zgc:163143 coding downstream 39043 34601852 ~ 34613101 (-)
XLOC_026577 nmrk1 coding downstream 52482 34597741 ~ 34599662 (-)
XLOC_026576 si:ch211-165d12.4 coding downstream 58505 34587988 ~ 34593639 (-)
XLOC_026582 thraa coding upstream 31277 34688022 ~ 34753605 (-)
XLOC_026583 nsfa coding upstream 110244 34766989 ~ 34801041 (-)
XLOC_026584 psmd11a coding upstream 144401 34801146 ~ 34816979 (-)
XLOC_026585 NA coding upstream 290657 34947402 ~ 34948061 (-)
XLOC_026586 ndufab1b coding upstream 878376 35535121 ~ 35541381 (-)
XLOC_026572 NA non-coding downstream 510963 34139637 ~ 34141181 (-)
XLOC_026558 BX649502.11 non-coding downstream 565661 34086041 ~ 34086483 (-)
XLOC_026547 BX649502.5 non-coding downstream 587208 34063955 ~ 34064936 (-)
XLOC_026544 BX649502.10 non-coding downstream 593427 34058679 ~ 34058717 (-)
XLOC_026588 NA non-coding upstream 908383 35565128 ~ 35574451 (-)
XLOC_026600 NA non-coding upstream 1663494 36320239 ~ 36323625 (-)
XLOC_026606 NA non-coding upstream 1926355 36583100 ~ 36587136 (-)
XLOC_026612 FO744883.1 non-coding upstream 2099288 36756033 ~ 36756149 (-)

Expression


Co-expression Network