LOC110515555


Basic Information

Item Value
gene id LOC110515555
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 4574163 ~ 4575872 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594424.2
GTAATAACTATTTAAATCAGTCTGTCCTGACTCAGCTCAACAGTCTCCAGTCTACCAACTGGTCTCTGTAACTTCATCTTTGTCTCTGTGGTGTACAGTCTTCAGGTGATGATGGGGGTATTGAATAATCtcactactctcctcctcctctctctccttcctgttgcTCTCTCTCATGTAGTGAAGAAGTTCAGCGATGTTCCACAGTGCCAGAAGTTCTTCCTGGAGGGGACAACTCCAAATCTCCCAGGTATTTTGTATGATGGGATAGTCAAGAACGAGGGCCGGTACAAGCCGATTTGCCAGAAGCACAAGAACACCTACAGGTTTGCAACTCTCTACGACACGACCAACAAGATCCCTGTGTTCTCAGCCTACACCTTCACTGGTTGTATACCGGGTAGACCAGATGAACGCTGGATGATGGAGCCCCAGCTCGACGGGGTCAACAGCGCTGAAATGCGGATACAAGATGGACGCCGTTACGAACACCAGGCTGAGCAAAAGGACTATAAATACTCACAAAATAAAAGGGTGAACAGAGGTCACCTCTTCCCAAGTTCACATGCTCATGACCTTGAAACTCAGGAGTCCACCTTTACCCTGACCAACATCGTTCCCCAGGACATCACCTTCAACGATGGCAGCTGGAATGAAATGGAGAGAAATGTCAGAGGAACTCTTGTGAAGAACTGTAAGGATGCTAAGGACCAGATAAAAGCCTATGTGGTGACTGGAGCAGttcccaacaacaacaacaacaaactgaaCCAACGAGTGAACATCCCGTATCTCATGTGGACAGCCTTCTGCTGTGAAAACAAGAAGTACAAGAAGAACAAGAAGTGGATGGCTGGAGCATACTGGGGGGAGAacgaggggggggagggggcattGGATCAACAAACCTTGGGAGCACTCGAAGAGAAGTTGAACAAACATTACCAAGGTAAAGGAAGTCCTGTCAAGGTGTTCCCAAGAGATTGTCCAAGAGTTACTAAACCTACCACTTCCTCCTAACCTAGTTGGAAGAATTTATTCCGTAGTGAGGAATCTTTACAATTCCATGAGAAATAGTTCTGGAAGGTTCTTTGGATGATCTGGGTACAGATGCTCTCACcatatcaacaaactatcattaCTGTTAGAGTAATGATTATCAGGGTTAAATTGGTAATGAGGGTTGTAATGGTAATGAGGGTTGTATTGGTAGTGAGGGTTGTAATGTAATGAGGGTTGTAATGTAATGAGGGTTGTAATGGTAATGAGGGTTATAATGGTAGTGAGGGTTGTAATGGTAATGAGGGTTATACTGGTAATGAGGGTTGTAATGGTAATGAGGGTTGTAATGGTAATGAGGGTTGTAATGGTAATGAGGGTTGTAATGGTAGTGAGGGTTGTAATGGTAATGAGGGTTGTCATGGTTACATGTCAACATATGTACACTTACAATTGTAATACTTTTCTCTTCTatgtctatatatatctatagtctactctcccctctctatccatctcttctatgtctatatatatcta
>TU870895
GTCTCTGTAATAACTATTTAAATCAGTCTGTCCTGACTCAGCTCAACAGTCTCCAGTCTACCAACTGGTCTCTGTAACTTCATCTTTGTCTCTGTGGTGTACAGTCTTCAGGTGATGATGGGGGTATTGAATAATCtcactactctcctcctcctctctctccttcctgttgcTCTCTCTCATGTAGTGAAGAAGTTCAGCGATGTTCCACAGTGCCAGAAGTTCTTCCTGGAGGGGACAACTCCAAATCTCCCAGGTATTTTGTATGATGGGATAGTCAAGAACGAGGGCCGGTACAAGCCGATTTGCCAGAAGCACAAGAACACCTACAGGTTTGCAACTCTCTACGACACGACCAACAAGATCCCTGTGTTCTCAGCCTACACCTTCACTGGTTGTATACCGGGTAGACCAGATGAACGCTGGATGATGGAGCCCCAGCTCGACGGGGTCAACAGCGCTGAAATGCGGATACAAGATGGACGCCGTTACGAACACCAGGCTGAGCAAAAGGACTATAAATACTCACAAAATAAAAGGGTGAACAGAGGTCACCTCTTCCCAAGTTCACATGCTCATGACCTTGAAACTCAGGAGTCCACCTTTACCCTGACCAACATCGTTCCCCAGGACATCACCTTCAACGATGGCAGCTGGAATGAAATGGAGAGAAATGTCAGAGGAACTCTTGTGAAGAACTGTAAGGATGCTAAGGACCAGATAAAAGCCTATGTGGTGACTGGAGCAGttcccaacaacaacaacaacaaactgaaCCAACGAGTGAACATCCCGTATCTCATGTGGACAGCCTTCTGCTGTGAAAACAAGAAGTACAAGAAGAACAAGAAGTGGATGGCTGG

Function

NR:

description
endonuclease domain-containing 1 protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594424.2 False 1539 mRNA 0.44 2 4574163 4575866
TU870895 True 863 TUCP 0.47 2 4574845 4575872

Neighbor

gene id symbol gene type direction distance location
LOC118965975 NA coding downstream 8762 4564760 ~ 4565401 (-)
LOC118965974 NA coding downstream 38123 4534165 ~ 4536040 (-)
LOC118966171 NA coding downstream 44570 4528651 ~ 4529593 (-)
LOC110518373 LOC106597704 coding downstream 106476 4465470 ~ 4467687 (-)
LOC110515470 LOC106597704 coding downstream 126162 4445724 ~ 4448001 (-)
LOC118965976 rbm46 coding upstream 299216 4875082 ~ 4879698 (-)
rbm46 rbm46 coding upstream 304038 4879904 ~ 4900797 (-)
LOC118965977 LOC106578182 coding upstream 326020 4901886 ~ 4916456 (-)
LOC110532986 LOC106578168 coding upstream 347165 4922850 ~ 4933486 (-)
LOC110518233 LOC106594193 coding upstream 409946 4985812 ~ 5018523 (-)
G765143 NA non-coding downstream 11951 4529098 ~ 4562212 (-)
G765151 NA non-coding downstream 64731 4508542 ~ 4509432 (-)
G765147 NA non-coding downstream 73987 4498996 ~ 4500176 (-)
G765146 NA non-coding downstream 77215 4496433 ~ 4496948 (-)
G765145 NA non-coding downstream 77886 4494722 ~ 4496277 (-)
G765168 NA non-coding upstream 5965 4581831 ~ 4582866 (-)
G765182 NA non-coding upstream 37583 4613449 ~ 4614168 (-)
G765183 NA non-coding upstream 41047 4616913 ~ 4629021 (-)
G765184 NA non-coding upstream 44850 4620716 ~ 4621245 (-)
G765188 NA non-coding upstream 61273 4637139 ~ 4638023 (-)
G765100 LOC106597704 other downstream 38084 4446327 ~ 4536079 (-)
G765059 NA other downstream 254337 4270732 ~ 4319826 (-)
LOC118966151 LOC106587785 other downstream 557754 4012152 ~ 4033537 (-)
LOC110498423 LOC105006500 other downstream 715270 3851852 ~ 3901549 (-)
G763961 NA other downstream 1275060 3286243 ~ 3299103 (-)
G765347 NA other upstream 479614 5055480 ~ 5057322 (-)
G765579 LOC101077030 other upstream 721610 5297476 ~ 5298437 (-)
G766599 LOC106578100 other upstream 1625503 6201369 ~ 6209209 (-)
G766640 NA other upstream 1675731 6251597 ~ 6262155 (-)
G766665 NA other upstream 1764755 6340621 ~ 6365895 (-)
G765142 NA non-coding downstream 19769 4486692 ~ 4555076 (-)
G765141 NA non-coding downstream 21125 4485552 ~ 4553720 (-)
G765144 NA non-coding downstream 45440 4491813 ~ 4529405 (-)

Expression


Co-expression Network