rbm46 (rbm46)


Basic Information

Item Value
gene id rbm46
gene name rbm46
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 4879904 ~ 4900797 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987135.1
TCCACACAGACCGAGCGTCCGACGTTAGCTGACCATATGGACGGAGACGGCGGTAGTGTGACCGGGGACGACGGGAGGACGGAGAGCCCGAATGAGGCTGCGCTTCTAGCGCTGATGGAGACCACGGGATACAGCATGGTACAGGAGAACGGACAGAGGAAGTTCGGTGGCCCGCCTCCAGGTTGGGATGGCCCTCCTCCCCCACGAGGGTGTGAGGTGTTTGTAGGTAAGATCCCCAGGGACATGTATGAGGATGAGTTGGTGCCCGTGTTTGAGAGAGCTGGGAGAATCTACGAGTTCAGACTGATGATGGAGTTTAGTGGAGAGAACCGGGGCTACGCTTTCGTCATGTACACTACCAGAGAGGCAGCTCAGAGATCCATCCATCTCCTAGACAACCATGAGATCAGACCAGGGAAGTTTATAGGAGTGTGTGTCAGTCTGGACAACTGTAGATTGTTCATAGGGTCTATACCCAAAGACAAGACGAAGGAGGAAATACTAGTGGAGATGAGGAAGGTGACAGAAGGAGTGGTAGACGTCATAGTTTATCCCAGCGCTACAGACAAGACTAAGAACAGAGGGTTTGCCTTCGTTGAGTACGACTCTCACAAAGCAGCTGCCATGGCACGGAGGAAACTaataccagGTACGTTTCAGCTGTGGGGCCACACTATCCAGGTGGACTGGGCCGAACCAGAGAAGGATGTTGACGAGGAGACTATGCTACGTGTCAGAGTGCTCTacgtcagaAACCTGATGATGACAACTACTGAAGAGACACTGAGACAGGAGTTCTCTAGATTCAAACCTGGCACTGTGGAGagagtcaagAAATTGACAGACTATGCGTTTGTCCACTACCACTCCCGTGAGGACGCAGTGACGGCTTTACACCTGATGAACGGAGCGCTGATCGACGGAGCCACCATCGAGGTCACCCTCGCCAAGCCTGTCAGTAAAGAGGGCGGTCGGCGGTTCGGTAACCGTGGTTATGTCGGTAACAGTAACCTTGTGGGTCCCTACGGCGATGTGTCCTCCACCGGGAGTTTTCTCTTCCAGGGACATGAGGATGGAAGCATGATGGGAGGAGgaggaggagggatggaggtagggactCCTCTACGACCACTCAGCCTGCCACCTCGCCTGGGGAGTCTCTACGTTGGAACAGGAACAGGGGAtgtggagaggtgtgtgtatCCCATCTTCGCTGGCTCCAGTCTCTCCCCCGCCAGCCTGCTGTCACTCAAACCAGGTCAGTTTAGTTCAGCGGTGTCTCTGCTAGAGTACTACTGCTATAAGAACAGCTGGGCTCTACCTGagtactacctctactactaataatactataataatactatatatgTTGTTACTAGGTCAGTTTAGTTCAGCGGTGTCTCTGCTAGAGTACTACTGCTATAAGAACAGCCGGGCTCTACCTGagtactacctctactactaataatactatataatatactgtaataatacTATA
>XM_036987136.1
TCCACACAGACCGAGCGTCCGACGTTAGCTGACCATATGGACGGAGACGGCGGTAGTGTGACCGGGGACGACGGGAGGACGGAGAGCCCGAATGAGGCTGCGCTTCTAGCGCTGATGGAGACCACGGGATACAGCATGGTACAGGAGAACGGACAGAGGAAGTTCGGTGGCCCGCCTCCAGGTTGGGATGGCCCTCCTCCCCCACGAGGGTGTGAGGTGTTTGTAGGTAAGATCCCCAGGGACATGTATGAGGATGAGTTGGTGCCCGTGTTTGAGAGAGCTGGGAGAATCTACGAGTTCAGACTGATGATGGAGTTTAGTGGAGAGAACCGGGGCTACGCTTTCGTCATGTACACTACCAGAGAGGCAGCTCAGAGATCCATCCATCTCCTAGACAACCATGAGATCAGACCAGGGAAGTTTATAGGAGTGTGTGTCAGTCTGGACAACTGTAGATTGTTCATAGGGTCTATACCCAAAGACAAGACGAAGGAGGAAATACTAGTGGAGATGAGGAAGGTGACAGAAGGAGTGGTAGACGTCATAGTTTATCCCAGCGCTACAGACAAGACTAAGAACAGAGGGTTTGCCTTCGTTGAGTACGACTCTCACAAAGCAGCTGCCATGGCACGGAGGAAACTaataccagGTACGTTTCAGCTGTGGGGCCACACTATCCAGGTGGACTGGGCCGAACCAGAGAAGGATGTTGACGAGGAGACTATGCTACGTGTCAGAGTGCTCTacgtcagaAACCTGATGATGACAACTACTGAAGAGACACTGAGACAGGAGTTCTCTAGATTCAAACCTGGCACTGTGGAGagagtcaagAAATTGACAGACTATGCGTTTGTCCACTACCACTCCCGTGAGGACGCAGTGACGGCTTTACACCTGATGAACGGAGCGCTGATCGACGGAGCCACCATCGAGGTCACCCTCGCCAAGCCTGTCAGTAAAGAGGGCGGTCGGCGGTTCGGTAACCGTGGTTATGTCGGTAACAGTAACCTTGTGGGTCCCTACGGCGATGTGTCCTCCACCGGGAGTTTTCTCTTCCAGGGACATGAGGATGGAAGCATGATGGGAGGAGgaggaggagggatggaggtagggactCCTCTACGACCACTCAGCCTGCCACCTCGCCTGGGGAGTCTCTACGTTGGAACAGGAACAGGGGAtgtggagaggtgtgtgtatCCCATCTTCGCTGGCTCCAGTCTCTCCCCCGCCAGCCTGCTGTCACTCAAACCAGGTCAGTTTAGTTCAGCGGTGTCTCTGCTAGAGTACTACTGCTATAAGAACATTTAGGCTCTACCTGagtactacctctactac

Function

symbol description
rbm46 Predicted to enable mRNA binding activity. Predicted to be active in nucleus. Orthologous to human RBM46 (RNA binding motif protein 46).

NR:

description
PREDICTED: probable RNA-binding protein 46

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K25082 RBM46; RNA-binding protein 46

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987135.1 False 1498 mRNA 0.52 13 4879904 4900797
XM_036987136.1 True 1341 mRNA 0.54 13 4880182 4900797

Neighbor

gene id symbol gene type direction distance location
LOC118965976 rbm46 coding downstream 206 4875082 ~ 4879698 (-)
LOC110515555 NA coding downstream 304038 4574163 ~ 4575872 (-)
LOC118965975 NA coding downstream 314503 4564760 ~ 4565401 (-)
LOC118965974 NA coding downstream 343864 4534165 ~ 4536040 (-)
LOC118966171 NA coding downstream 350311 4528651 ~ 4529593 (-)
LOC118965977 LOC106578182 coding upstream 1089 4901886 ~ 4916456 (-)
LOC110532986 LOC106578168 coding upstream 22234 4922850 ~ 4933486 (-)
LOC110518233 LOC106594193 coding upstream 85015 4985812 ~ 5018523 (-)
LOC110532892 LOC106578154 coding upstream 157232 5058029 ~ 5075839 (-)
LOC110511386 LOC106560508 coding upstream 293446 5194243 ~ 5247622 (-)
G765260 NA non-coding downstream 36664 4842442 ~ 4843240 (-)
G765246 NA non-coding downstream 77704 4801955 ~ 4802200 (-)
G765224 NA non-coding downstream 117329 4760163 ~ 4762575 (-)
G765217 NA non-coding downstream 170721 4708750 ~ 4709183 (-)
G765210 NA non-coding downstream 193389 4685170 ~ 4686515 (-)
G765290 NA non-coding upstream 3301 4904098 ~ 4907027 (-)
G765291 NA non-coding upstream 4096 4904893 ~ 4905327 (-)
G765280 NA non-coding upstream 14173 4914970 ~ 4916039 (-)
G765292 NA non-coding upstream 18466 4919263 ~ 4929340 (-)
G765295 NA non-coding upstream 20461 4921258 ~ 4922233 (-)
G765100 LOC106597704 other downstream 343825 4446327 ~ 4536079 (-)
G765059 NA other downstream 560078 4270732 ~ 4319826 (-)
LOC118966151 LOC106587785 other downstream 863495 4012152 ~ 4033537 (-)
LOC110498423 LOC105006500 other downstream 1021011 3851852 ~ 3901549 (-)
G765347 NA other upstream 154683 5055480 ~ 5057322 (-)
G765579 LOC101077030 other upstream 396679 5297476 ~ 5298437 (-)
G766599 LOC106578100 other upstream 1300572 6201369 ~ 6209209 (-)
G766640 NA other upstream 1350800 6251597 ~ 6262155 (-)
G766665 NA other upstream 1439824 6340621 ~ 6365895 (-)

Expression


Co-expression Network