LOC110532892 (LOC106578154)


Basic Information

Item Value
gene id LOC110532892
gene name LOC106578154
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 5058029 ~ 5075839 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987150.1
TACTGCTACACAGGAATTTCCGGTATCGTTTACGtactatttttgttgttgtttttgttgtaaaGGTGTTTGGATTGGAccggaaccagagagagagagagggagagagagatgggggaccGGCGCGGGAAGCTCCTCTCTCCCCGCGTCTCCAAGGGAACACTGCAGCTCCGCGTGATCTTTCTGGACAACAGCGAGCGCGTCTTTGAGGTCGAGCAAAGGATCCTGGGATGTGACTTCTTCAACAAGGTGTGTGGCCACCTCAAGCTATTGGAGAAGGAATACTTTGGACTGGAGTTCAGACATCACACTGGTAGTTATGTGTGGCTGGAACAGTTGAAACCTCTAGCCAGTCAGATAAAGAACACCAGTGATCTGTTCTTCAGATTCATTGTCAAGTTCTTTCCTCCAGACCCAGGACAGCTGCAGAGAAGACTCACaaggTATCTGTTTTCTCTCCAGATAAAGCAGGACCTCTCTACAGGCAGTCTTACCTGTAATGACAACAGCGCCGCCCTGCTGGTCTCCCATATACTGCAGTCAGAGCTGGGAGACTACAAGGAGGAGTTGGACATCCACCATCTAGAGATGAGAAGATACGTCCCTAACCAGGAATACCTGGACCACAAGATTATGAAGTTCCACAGGAAACACAGGGGTCACTCTCCTGCGGACTCAGACGTCCATCTGTTGGAGGTTGCTAGGAAACTGGACATGTACGGTATCCGCCCCCACCCTGCCCACGATGGCGAGGGCATAAGACTCAACCTGGCCGTCACACACTCTGGGGTACTGGTgttccagGGCAACACTAAGATCAACACGTTCAGCTGGGCCAAGGTCCGTAAACTGAGCTTCAAGAGGAAACACTTCCTCATCAAACTACACGACCAAATAGGGCCGTCCCGTAAGGACACGGTAGAGTTTGCGATGGCGAGTCGAGACGTTTCTAAGTCCTTCTGGAAGACCTGCGTTGAGTACCATGCCTTCTTCAGACTGGCCAAAGAGCCACAGTCACGCAGCAAGACTCTGCTGTCCAGCAAAGGATCCAGCTTCAgatacagTGGCAGGACCCAGAAACAGCTGATGGAGTATATGCCCACAGGGGAGAAAAAACACAGACCTTTCGAAAGGTCCTACTGTAAGTCAGAGTCCAGACAGTGTAGATCGTCTCCTGACCTCCTCACAGACGTCTCCAAACAGCTCTACGAGCAGTCCCACTCGTTCCCGCGCCCCGGAAGCCACAGCGAAGAGGAAGTGGAAAGACAACAACAGGAAGTGGGAGGAGCTAACCCTAAACGTAGCCAATCAACTGTCGAAGTGGTCTTCTCCACGGAACTGCAGCGGTCCCGCCTCCCACAAGCTTTCCACCAATCACTGGCCTCTCCTAAGCAAAGGTCCGCCTCTACATCGGTAGACATccaggagaggagggcaggggagcaACGGCAGGGAGGGGCGGGGCATCACCACGGTAACAGCAGGGCCAGACTTCGGCCCAAACCCCAGCCTGCCTCCGACGCGCAGCAATTGGTCCTCCTATATCCCAATAACCCTGCCTACCAGTTCCATCCAGTCCTTCCAACGTTCCCATTGGCCAGCTATCCGCACGGACATGCCTACTTTTTGGACGGTGCCGTAACCTCATTGGAGCGTCTCCCGCAGATGCAACGCTTAGACCACACCCTGTTGGAGGGGCTGACACACCCTTCTCTCTACACACGCTCTGATTCGTCTTCCCTGTCGCCACTCAGGCGGAATCTCCGTCCATCCGGGCTGGGATTGACCAGGGTCTACCACGGTGGGTTCTTGAGCGGAAACGCAGCCAGGAGTTTCGACGTCGGGAGAATAGAGGCGGGACATTACAGCGACGACTCCAACTTCCTGCCTGGACTTCCTCGTCGTGCCACCAGCCAACCGGACGTTAAGCTCCCCAGAGTAGTCCCCGCCTCCAACCCCGCCTCTGAGTTCCGTCCCTTAGGTTACTACCCCCACCTATCACGTCACCAGACTCCACAAAGACCCTCCTACCTGCCTCTAAACTCCTCCCCCTTGCCAGACCGGCCCACCTCGCTGTGTGTTCTAGGGGGGGCTGGTGGAAGCTACAGTGATTCAGACCCAGAGGTAATCTACCCATACTACTGCCCAGTACCCCCGTTGGGTAAAGTGGTACGGTCCAATGCTCTGGCTAGGATGAGATTTTCCTCTGGGAGTTTACaactggaggaggaagagggggaagaggagaggtatAGCAGTGGGGGAGAGGGTACGCCTCGAATTACGAAACTGAGACTGTAGAATAGTGGTGTGTGGGAGTATAGATCAACAGGTgttgtgtgacgtgtgtgtgttatgtgtgtgtgtgtggtcagggtGACATTTGGTGTATTCAGGATGTTTTGTACATTGAAGAGTTACTCCCCCCCCGAG

Function

NR:

description
FERM domain-containing protein 7-like, partial

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987150.1 True 2433 mRNA 0.54 12 5058029 5075839

Neighbor

gene id symbol gene type direction distance location
LOC110518233 LOC106594193 coding downstream 39506 4985812 ~ 5018523 (-)
LOC110532986 LOC106578168 coding downstream 124543 4922850 ~ 4933486 (-)
LOC118965977 LOC106578182 coding downstream 141573 4901886 ~ 4916456 (-)
rbm46 rbm46 coding downstream 157232 4879904 ~ 4900797 (-)
LOC118965976 rbm46 coding downstream 178331 4875082 ~ 4879698 (-)
LOC110511386 LOC106560508 coding upstream 118404 5194243 ~ 5247622 (-)
LOC118966152 NA coding upstream 737584 5813423 ~ 5813875 (-)
LOC110531356 LOC106578148 coding upstream 906933 5982772 ~ 6024749 (-)
exoc6b LOC106560516 coding upstream 990657 6066184 ~ 6190414 (-)
rcor2 rcor2 coding upstream 1189492 6265331 ~ 6287151 (-)
G765343 NA non-coding downstream 10527 5045535 ~ 5047502 (-)
G765320 NA non-coding downstream 49151 4987493 ~ 5008878 (-)
G765315 NA non-coding downstream 58012 4984273 ~ 5000017 (-)
G765292 NA non-coding downstream 128689 4919263 ~ 4929340 (-)
G765377 NA non-coding upstream 70474 5146313 ~ 5146613 (-)
G765529 NA non-coding upstream 106301 5182140 ~ 5183023 (-)
G765530 NA non-coding upstream 106485 5182324 ~ 5214592 (-)
G765539 NA non-coding upstream 113928 5189767 ~ 5190794 (-)
G765563 NA non-coding upstream 185500 5261339 ~ 5261974 (-)
G765347 NA other downstream 707 5055480 ~ 5057322 (-)
LOC110515555 NA other downstream 482157 4574163 ~ 4575872 (-)
G765100 LOC106597704 other downstream 521950 4446327 ~ 4536079 (-)
G765059 NA other downstream 738203 4270732 ~ 4319826 (-)
LOC118966151 LOC106587785 other downstream 1041620 4012152 ~ 4033537 (-)
G765579 LOC101077030 other upstream 221637 5297476 ~ 5298437 (-)
G766599 LOC106578100 other upstream 1125530 6201369 ~ 6209209 (-)
G766640 NA other upstream 1175758 6251597 ~ 6262155 (-)
G766665 NA other upstream 1264782 6340621 ~ 6365895 (-)
G766749 NA other upstream 1381364 6457203 ~ 6464631 (-)

Expression


Co-expression Network