LOC110531356 (LOC106578148)


Basic Information

Item Value
gene id LOC110531356
gene name LOC106578148
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 5982772 ~ 6024749 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987185.1
gctccaacCCTGGCTGCCTGCCGGCGCGCAGCCTGCCTGTTACTATATAAACACATACTGAGAGAGGCTGCCTGCGCTTCTCACTACACACACTCAGAGAAACCTGTATGTGAAAGACAGATAGAGttcgagagggacagagagagagtgagtgacacgacagagagtgtgtgtgtgagtgagagaacgAACGCTACTAGTTGGGAAAGAAGGTatacagagacaggggagacgaCTAACGGTTGCCTAAAGCAGCATCAGAAGACTCGGTGACggtctgtctctggctccaccgGGCTCCCGCGCGCTCTGCTGCAAGAACTAACTGCAAAACGGATTATTTAATTTTGcaacatttttttaatttatttttctcTTCGTCTGCTTCTTGAATAACACTTTATTTTACAATCTTGAGAAAGATTTATGCAGGTATAATACGTTTTTTTTTGcggaatagagggagaggggttattctgggaaggttttcctcTACTTTCCATTTCTTGTAActttttttaaaagaaaagccCCAGTTTATTTTCAGAATACTTTCCGAGACTCGCTCACTGTTTCCACGTGCGCTCTGAGAGCGGGACAAATACTTGTCAAAcggatctttttttttaaatttttttttatccCGTATTGTTATATTTTCTTATTTAGGGAAATTGACCTTCAAAAATCAAACCAAAAATGAGATTTCAAACGTTAACTCATCAGTTTCCACTCTCGATGAATGCTTTCCTTCATTAAAGTTATTGAAAGTGACGTTTTTTTTAAAAGGACTTTGTGACATATTTCTTTACACACTGATTGATAACCTTGGAACtgcgagaggggagagagttcCGCGCGTCATCTGTAGAGTTACTAATAGGCCTATTTACTCCATTGAATTGTTATCTATTTCAACGACAACAAAAACTAGCATTTTTATAGTTATATTTCATAATCAATCAATTACAATCAATCAAGTCATTTTTATCGATAACCATCGATATATTGATTGATCATCCTCAGAGCGTTTCCAATTCCTTACAACTCAACTTCCCTCAACCTGCACGGTGGTGAGATCAGTGATTTCCTCCTCcgctccaccaccaccatcacccagACACCGACCCTTCCTCGCCATGCTATTCGATAACTTTGACCTGGTTTCAGCCTTGGCCACCCTAGCGGCCTGCGCGGTGTCCATGGTCCTCCTCCTAGTTGTGTCCCAGCAACTCTGGCAGCTCCGATGGACGTCAACCCGGGATAAGAACTGCAAGCTGCCGATGCCTAAAGGTTCCATGGGGTTCCCCATCATAGGAGAAACCTGCCACTGGCTCTTCCAGGGGTCGGCGTTCCACGCATCGCGGAGGCAAAAGTACGGCAACGTCTTCAAGACCCACCTGCTGGGACGCCCCCTGATCCGGGTCACCGGTGCCGAGAACGTCCGGAAGGTTCTAATGGGAGAGCACACGTTGGTCAGCGTGGACTGGCCTCAGAGCACCTCGACCCTACTGGGACCCAACTCACTGGCTAACTCTATAGGAGATATACACCGCAAGAGACGAAAGgtcTTCTCCAAGGTGTTCAGTCATGAGGCTCTGCAGTCCTACCTCCCTAAGATCCAGCAGGTGATCCAGGAGTCACTGAGGCTGTGGAGCTCCAACCCAGAACCCATCAACGTCTACAGggaATCCCAGAGGCTGTCGTTCCACATGGCAGTGAGGGTACTGCTGGGGTTCAGAGTAGCAGACGAGGAGATGAGACATCTGTTCAACACCTTCCAGGAGTTTATAGACAACATCTTCACCTTACCCATAGACCTGCCTTTCAGTGGATACAGGAAGGGTATCCgtgccagggacacactccagaAAGGAATAGAAAAAGCCATCAGGGAGAAACCCCTCTCTTCCCAGGGGAAGGATTATAGCGACGCACTTGATATCCTGCTGGAGAGCGCAAAAGAGAACGGCACTGAACTCACCATGCAGGAACTCAAGGAGGCGACCATTGAGCTGATCTTCGCAGCGTTTGCCACCACGGCCAGCGCCTCCACCTCTCTCATCATGCAGCTCCTACGCCACCCTGCCGTCCTGGAGAAGTTACGAGAGGAGCTCCGGACCAGGGGGATCCTCCACAACGGCTGTCTGTGCGAGGGGGAACTGGGTCTGGACACCATCGTTAGTCTGAAGTATCTGGACTGTGTGATTAAGGAGGTGCTGAGGCTCTTCACGCCCGTGTCTGGGGGTTACAGGACGGCCCTGCAGACATTTGAACTAGACggGGTACAGATCCCGAAGGGTTGGAGTGTGATGTACAGCATCAGAGACACACACGATACCTCCTCCGTCTTCAAGGACGTGGACGCCTTCGACCCCGACCGCTTCTCCCAGGAACGCAGCGAAGACAAGGAGGGACGCTTCCACTACCTCCCGTTCGGCGGCGGCATCCGCTCCTGTCTCGGCAAACAGCTCGCCACTCTCTTCCTCCGTATACTGGCCATCGAGCTGGCCAGCACCAGCCGGTTTGAGCTGGCGACCCGGAATTTTCCTAGAGTGGTGACGGTGCCGGTGGTTCACCCAGTGGACGGGTTGAAGGTGAAGTTCTACGGTCTGGATTCTAACCAGAACGAGATTCCGTCAGATCTACTAGCCGACATCAAGACGGAAGAGCTGCTGGGAGCCGCGGTGTAGATCGTTGATTTGGATTGGACGAAGCACgggggaaggaggaagggaaggatggaatagagggaggagaaatgagagagaggaggaggacatggCAGAGAGAATAAAAGGAGGATGGGAGGTCAGGACTGATCTagcatcctttttttttttttaccccattttGCTGATGTCTTGGAATGTTGGATGTCTCCGTTGAACTCTAAAAAGGAACATTCTGAATTCCGATTCCTTCTCTTTTGTCGTGCTATTGGTAGGTCATTGGAACTTTCTGGGAGACTAAGAAGAAGAACAGAATGCTGCCAAAAAAAAAGTGTATAATCTCCGTTTGTTTTCCAAGAAATATACAAAACTATGTATAAAATGAAAAGTAATGTAATATAATGAATGAATTAAAAACAGAAGATTTAATGTTGAGAGAAGTTATGCACAATTAGGAAACAGATTCTTAAGGGGAGTGTATTTGgattagagggatggatggaggtaggGAAGAACGAACGACATAATGGGATAAAACAGGGTATAATGATTTAAGAAGCTTAGGGAAAGGATAACAGACAGGATAatctacacaggagagagagagagagactcttaaAGTGAATGAAGCAtccagagctagagagagaagggTCAGAGGTGGGTTCATACACACTTGTATATATGAAGGTGCTCCAAATCCAGTCCTGGCAAGTGGTAAGGTTTTACATTCTTCCAGCTCTAACACACGTCTCTCAAACAATCCAGCTAGCAACCTATCAACTATCACGATTAGTTAAGTGAGGCGTTTTTACCCGGAAAATGGACTATAATTCTCCAGGATGGGGTTGAAACAGACCCTCTGCTATAAAGGACTTCAGGGAGAATGCGAAAGAGAGACTCAAAAGCTGGAAAGGACTTTAGGATTGTGTGTTAATAGCTCAGGTGTGGAAGGGGATCTTTCATTGGACGTATTTTCAtatcttcattttttttttttttttttactcaacctGCACATAAGAGACGATCAGTTGTTCCCAATCATCCCCCTTCCCCTTCAAACCCTCGAATCTGTGCTATGATGTCATCGGACgatgtgtccgtgtgtccgtcgCTTGGCCTGATatctgcctctttgcttgactggATGTGTTACGGATATAAAGGAGAACCATTTTTCTAAAGCTATCAGAATCGTCTAAGCTGGAGGAAGAatgatagagggaaagagaaggggagataaagaaagagaagacgacagggagagataaagagagagaggggaagagagagacagatggaggaggagaggagacctaTATACTTGCTGCTTGAGAGTTGCtttctttttgttttgtatttcagttgGAGCAGAGTGTTGTTGTGCTCTGTGGGACGTGAAGGTGACATTTTGACTAGCTGCTCCTCTTTATCAACACAAAAATGCAAAATTGATTTCAAGAAAAATCTAAACTTTATTAGCTAATGAGATTTAACAACGTGAGACGATTGCACAATCAGAATCATTTTTGGAACTTATTAGTAACCCCAACACCAGGAAATGTCCATCATGGATACGGAGAGAAAATACTTCCAAAACAAAACTACTTCCTTTATAACTCGGCAAAAGAACACTTAGAACTTAATGAACATTCCGGAACTCACAAACATTCTGGAACTCACAAACATTCTGGAACTCACAAACATTCTGGAACTCACAAGCATTCTGGAACTCACAAACATTCTGGAACTCACAAACATTCTGGAACTCACAAACATTCTGGAACTCACAAACATTTTTGGAACTCACAAACATTTTTGGAATTCACAAACATTCCGGAACATTCTGGAACATTCTGAAACAAAATCCCGAAAATCCTTGGACAGTTGGGAGTTTTATCTGGAGGGAGCTAGGACCCAGGGACTGTTGGGAAAAGCTTCTATAAATGATATTCTACTACCGTCTtctacagatatatatatattctgggaCCAACTACACCACTGATTGTCTACACATACTATAAGTACAGTGAGCTGCTTGTGTGTTTCTAGATgacagttatatatatatatatatatatatatatatatatatatatatatatatatatgtatatatatatatatatatatatatatatatatatcatatataaatTGCAAGTGAGATTTCtcgttttttttattgtattttaaaatTGTACTTAgcaaatatttgtattttgtgAAAAGCAAAGAGGGAGTTCTGTTTATTCTGATTCTTGTGTTTAGTACGTAAGCCATGAGTTAACACCTGTTCTATCTAATAccctaatattattattattgactaTTAATATTTCTTATTGtaataaaatattattattttaagtTGCCATTTTTATTATATTTCCAGAGATTTAGTATAAATGTCAAAAGTCTGTTTGTTGGTAAATATCTTTATATTTAGTATGATATGAATTATTTCAGTTATATTGTAAAACAGCGTTGAATAAGTTAATATTGTTTATTGTAATAATTATTCTTATTTTgggttattattataattatcattataattattatactaataattattattattatcaccaCATTcatttattattaatattaagAAGACAATTACTTGCGAGGTTCAGTATTGAAGTGTCACATGACTTCATTGGTTATTTTCTCTGTTTGTGTCCcatttgacaccctattccctatactgctTTTGATCAGAGTCCTATGGTAAGTAGTGAACTAACTAGGgactagggtgtcatttgggatgcaaatgtctatcgctgtctgtctgtctttctgtacagaatgtgtatttcattttttacagATCCCAACAATTCACTTAGTTCAAATATGAGTGTTTTTCAACTGTGATTCTTAAAATGTACTCCTGTAATAAAATATAATGTGAAAATTAA

Function

NR:

description
cytochrome P450 26B1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K12664 CYP26B; cytochrome P450 family 26 subfamily B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987185.1 True 5605 mRNA 0.42 7 5982772 6024749

Neighbor

gene id symbol gene type direction distance location
LOC118966152 NA coding downstream 168897 5813423 ~ 5813875 (-)
LOC110511386 LOC106560508 coding downstream 735150 5194243 ~ 5247622 (-)
LOC110532892 LOC106578154 coding downstream 906933 5058029 ~ 5075839 (-)
LOC110518233 LOC106594193 coding downstream 964249 4985812 ~ 5018523 (-)
LOC110532986 LOC106578168 coding downstream 1049286 4922850 ~ 4933486 (-)
exoc6b LOC106560516 coding upstream 41747 6066184 ~ 6190414 (-)
rcor2 rcor2 coding upstream 240582 6265331 ~ 6287151 (-)
LOC118936332 LOC106578081 coding upstream 315827 6340576 ~ 6351208 (-)
LOC118966221 NA coding upstream 316051 6340800 ~ 6340873 (-)
LOC118966228 NA coding upstream 317459 6342208 ~ 6342277 (-)
G766541 NA non-coding downstream 3122 5979198 ~ 5979650 (-)
G766533 NA non-coding downstream 20611 5960803 ~ 5962161 (-)
G765930 NA non-coding downstream 60690 5921543 ~ 5922082 (-)
G765924 NA non-coding downstream 66451 5916029 ~ 5916321 (-)
G765920 NA non-coding downstream 69958 5912428 ~ 5912814 (-)
G766540 NA non-coding upstream 6124 6030873 ~ 6031587 (-)
G766543 NA non-coding upstream 39640 6064389 ~ 6065709 (-)
G766574 NA non-coding upstream 42865 6067614 ~ 6068038 (-)
G766576 NA non-coding upstream 58230 6082979 ~ 6196404 (-)
G765579 LOC101077030 other downstream 684335 5297476 ~ 5298437 (-)
G765347 NA other downstream 925450 5055480 ~ 5057322 (-)
LOC110515555 NA other downstream 1406900 4574163 ~ 4575872 (-)
G765100 LOC106597704 other downstream 1446693 4446327 ~ 4536079 (-)
G765059 NA other downstream 1662946 4270732 ~ 4319826 (-)
G766599 LOC106578100 other upstream 176620 6201369 ~ 6209209 (-)
G766640 NA other upstream 226848 6251597 ~ 6262155 (-)
G766665 NA other upstream 315872 6340621 ~ 6365895 (-)
G766749 NA other upstream 432454 6457203 ~ 6464631 (-)
G766850 LOC106578109 other upstream 587330 6612079 ~ 6613412 (-)

Expression


Co-expression Network