rcor2 (rcor2)


Basic Information

Item Value
gene id rcor2
gene name rcor2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 6265331 ~ 6287151 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987184.1
ACTAGTAGCGACCAACAACTGGAATAGTACTAGCTACCCCCCACACCCATACCCCCCCACCGACGTTAGCCTGGCGATAACAAAAGGATTGAAAGTTGAAATATATATTATCAACGGAGGgcagagggaaaggaggagaggacggAGtatgCCCTCGGTGATGGAGCGGTCGGGGAGCGGCGTTCTGTCTAGGAGCAGGGCTAAAACCAATGGAAACAACCAACACTCGGAGGAGGACAGCAGCGATGAGGAGCACgctcacgACAGTATGATTCGAGTGGGAGGAGACTACCAGGCACAGATACCTGAGTTAAACCCAGacACGCCAAGCCGCTACAATGAGAAGGAGCAGAGGAGTATGCTGGTGTGGTGCCCCAACAGTCTCATCTCTGACGCcatgttGGATGAGTATATTCTGATGGCTAAAGAGAAGCATGGCTACAACATGGAACAGgcCCTGGGGATGTTGCTGTGGCATAAACATGATGTGGAGTGTTCCCTTGCTGACCTGGCTAACTTCACTCCCTTTCCCGAGGAGTGGACCGTAGAGGACAAGGTCCTGTTTGAACAGGCCTTCAGCTTCCATGGCAAGAGCTTCCATCGTATACAACAGATGctGCCTGATAAGCTGGTCTCAGGCCTGGTCCGGTACTACTACAGCTGGAAGAAGACCAGGACCAGAACCAGTGTTATGGACCGACAGGCTAGAAGACTGGTCAGAAAGACAGACAAGGAAgatggtAATGATGAGATAGAGGGAGACCCGGGCAGCGACAGCGACTTTGAGATCGACGCCAAAAAAGAGACAGTGAAGCAGCACAGCTCCAGTGgttctggaggagagaggggagcgcCAGGCCGGTCGAACCCACAGAGGAAAGAGTCTGTTGGGGCTCAGTACCGCCACCACCCCTTGAGAGCTCGTCGGAGACCACCTAAAGGCATGCATCTGAACCCCGAGGACATCATGACTGTGTCAGCCAATCACCACCATGGCTCTGGCAGACAGCTAGACACACACCTGGTGTCACTCAAGAGACGGgTCCAGAGTATTAAGCAGAACAACAGTAGTATGAAACACTGTCTAGACGAGGGCATCGACAGTCTGCGTCCTACAGGGccagCTCCCAAGATGAACTCTCGTTGGTCCACTGAGGAACAGCTGCTAGCGGTGCAGGctatCCGTCGCTATGGTAAGGACTTTGCGGTGGTTGCCGAGGTAATCGGTAACAAAACTCTGGCCCAGGTGAGCTCCTTCTTCGTTAGTTACCGACGGCGATTCAATCTGGACGAGGTCGTCAAGGAGTGGCAGGCGGAACAAGACGTAGCCTCCACACAGGGGCCTTGTGGGAGTCGTAGTAGAAacaaagagaggggaggagcagaggaggaagagATAAAGCTGGAAGACATTACTCCCCCCTGCGGTGACGCcaactccccctcccccccctcatCCAACAaccacacccctcctccttccctctcccagcCTCCCCCCTTACTGCGCCCGGCtcccccctctgccccccccaGCCTTCTCCGGCAGCCCCCCCCGCTCCAGACCCGACCCCTCCAGACCCGAACCCCCCACAATCATCCCCCTCCCCCGTTGATCCGTCCTGCAGTCGTGGCTCCGGGCCAACAGGGGAGCTCTAGTCTCTGTAGGGAACTAGGAAACaacctccgctcctctcctcctgcttgTTCTGGCGCTGGTCAGCCTCCCTCACTGGTAGGGCTCAAAGTAGAGCAAACCAACTCTCACTGACAGAAAGGAGGGGACTCTTGTATATTTAGGGAGGGGCTCTTGTATACTCAGATGGGTAGATTGTGCTGCTAGTGGGAGTGTTTATCCATTATGATGGAACAATAGAAATCAGAATGCAGTAGTTAGTTGAGTTCTCAGCCCCACCAGTCTGTTTGGTTCAGAAGCCTCTCGTTAAGTCCCCTCTGTATCACTCCATTCAGTTCTGACTCACACTTATAAACCAACTGCACAACCTGTGAATAACCATACTTCCATCTGAGGCTTGGGTCATCCATccttctgtcccccccccccagcagaaAATAGAAGGACATGCCCACACATGCCTCACGGCTGTCTCCATAGCAACCAGCACAGATGTGACTGGTTACCCACGGCAACGGTGACCCTGTATTTCACCCATCCCTCCTACCCAAAGAACAGAACTTTCAGAATACCAAAACCCTCAAGGAAAAGATACACTGGATTGTGGTGATGGATGCCATGacaacagaaccccccccccccccccccacacacacagtctccatGGCAACAACAGAACGAACTCTGGCAAAACACACCCAGGTTCCAGTTCCACACTACAAGGTGCTGAACTAATGATTCCACAGGGGAATCAGGAAAACGTCCCTCTTCTACCAGATCCACGTATTGTTGGTCTTATGACTGCAGCATTCTTTTGTTAGGTGATCTCTAAGTAGGTAGAcatccctatatatagtgcactactttggatcgGAGCCCATTTTGACCAAATCCCTATAAGGTCCTggtccaatgtagtgcactatatagggaataggatgcattTGTAATCCCAAGGCTCATGCATTTCTCCATTCTAAGTAGCATGCTAGTGTGGATATGGAACAGAGACCTGTTTTTGATTAAAAAGCACAAAAAAAGTCTCAAATGGCAGTTCTATTTAGCTCTGGTTACAGTTGTGTGCTATGTAGGGGatagtactgtacacactgtacaatTCACAGGTGTCGTCTGAGAACAAAATGTGAAGCTGAAATACTCGTagggttggatgggcattgtggcaaggagcagtgcagcttggttgtgTTTTGGAAGAGGATGCacagctcttgaccttcgcctctcctgagtccgaaAAGGAGTTGcaagtgatgagacaagactgtaactaccaattggataccatggtgggacaagactgtaactaccaattggataccatggtgggacaagactgtaactaccaattggggtgAAAATACAAAAAGTCATTTCTGAACCTGACATATGCAGCGTTGCATTTTTAAAATTTCAAATCGAGCTATAAACGCAGATCTTTCGTGATGcgtctggcaccctattccctacatagtgtactacttttgaggagttgtggtgccatttgggacacagatttcAAATACTTTGTGGCTACAAATGACTTGACTGTGTTTAGCAACATGTAATGTTCATGAAGTTTGAGACTGGATTTGCTTGTTATTGTTTTCAGGATATTTTCTTTTGGAATAAAACAAAATTACAACCA
>TU872929
acacagtctccatGGCAACAACAGAACGAACTCTGGCAAAACACACCCAGGTTCCAGTTCCACACTACAAGGTGCTGAACTAATGATTCCACAGGGGAATCAGGAAAACGTCCCTCTTCTACCAGATCCACGTATTGTTGGTCTTATGACTGCAGCATTCTTTTGTTAGGTGATCTCTAAGTAGGTAGAcatccctatatatagtgcactactttggatcgGAGCCCATTTTGACCAAATCCCTATAAGGTCCTggtccaatgtagtgcactatatagggaataggatgcattTGTAATCCCAAGGCTCATGCATTTCTCCATTCTAAGTAGCATGCTAGTGTGGATATGGAACAGAGACCTGTTTTTGATTAAAAAGCACAAAAAAAGTCTCAAATGGCAGTTCTATTTAGCTCTGGTTACAGTTGTGTGCTATGTAGGGGatagtactgtacacactgtacaatTCACAGGTGTCGTCTGAGAACAAAATGTGAAGCTGAAATACTCGTagggttggatgggcattgtggcaaggagcagtgcagcttggttgtgTTTTGGAAGAGGATGCacagctcttgaccttcgcctctcctgagtccgaaAAGGAGTTGcaagtgatgagacaagactgtaactaccaattggataccatggtgggacaagactgtaactaccaattggataccatggtgggacaagactgtaactaccaattggggtgAAAATACAAAAAGTCATTTCTGAACCTGACATATGCAGCGTTGCATTTTTAAAATTTCAAATCGAGCTATAAACGCAGATCTTTCGTGATGcgtctggcaccctattccctacatagtgtactacttttgaggagttgtggtgccatttgggacacagatttcAAATACTTTGTGGCTACAAATGACTTGACTGTGTTTAGCAACATGTAATGTTCATGAAGTTTGAGACTGGATTTGCTTGTTATTGTTTTCAGGATATTTTCTTTTGGAATAAAACAAAATTACAACC

Function

symbol description
rcor2 Predicted to enable transcription corepressor activity. Predicted to be involved in histone deacetylation; negative regulation of transcription, DNA-templated; and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of histone deacetylase complex and transcription regulator complex. Is expressed in brain; pectoral fin; and ventral mesoderm. Orthologous to human RCOR2 (REST corepressor 2).

NR:

description
PREDICTED: REST corepressor 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987184.1 False 3305 mRNA 0.51 15 6265331 6287151
TU872929 True 1016 lncRNA 0.42 1 6265332 6266347

Neighbor

gene id symbol gene type direction distance location
exoc6b LOC106560516 coding downstream 74917 6066184 ~ 6190414 (-)
LOC110531356 LOC106578148 coding downstream 240582 5982772 ~ 6024749 (-)
LOC118966152 NA coding downstream 451456 5813423 ~ 5813875 (-)
LOC110511386 LOC106560508 coding downstream 1017709 5194243 ~ 5247622 (-)
LOC110532892 LOC106578154 coding downstream 1189492 5058029 ~ 5075839 (-)
LOC118936332 LOC106578081 coding upstream 53425 6340576 ~ 6351208 (-)
LOC118966221 NA coding upstream 53649 6340800 ~ 6340873 (-)
LOC118966228 NA coding upstream 55057 6342208 ~ 6342277 (-)
LOC118966211 NA coding upstream 56159 6343310 ~ 6343381 (-)
LOC110531397 NA coding upstream 70999 6358150 ~ 6365572 (-)
G766640 NA non-coding downstream 3176 6251597 ~ 6262155 (-)
G766633 NA non-coding downstream 28847 6235941 ~ 6236484 (-)
G766631 NA non-coding downstream 30748 6233277 ~ 6234583 (-)
G766629 NA non-coding downstream 32992 6231442 ~ 6232339 (-)
G766624 NA non-coding downstream 42634 6222050 ~ 6222697 (-)
G766657 NA non-coding upstream 13487 6300638 ~ 6323871 (-)
G766658 NA non-coding upstream 33042 6320193 ~ 6321181 (-)
G766682 LOC106578097 non-coding upstream 43752 6330903 ~ 6334035 (-)
G766687 NA non-coding upstream 51441 6338592 ~ 6338812 (-)
G766688 NA non-coding upstream 51878 6339029 ~ 6339646 (-)
G766599 LOC106578100 other downstream 56122 6201369 ~ 6209209 (-)
G765579 LOC101077030 other downstream 966894 5297476 ~ 5298437 (-)
G765347 NA other downstream 1208009 5055480 ~ 5057322 (-)
LOC110515555 NA other downstream 1689459 4574163 ~ 4575872 (-)
G766665 NA other upstream 53470 6340621 ~ 6365895 (-)
G766749 NA other upstream 170052 6457203 ~ 6464631 (-)
G766850 LOC106578109 other upstream 324928 6612079 ~ 6613412 (-)
LOC110531366 LOC106578102 other upstream 585685 6851197 ~ 6882912 (-)
LOC110531380 LOC106578126 other upstream 678303 6963142 ~ 6969857 (-)

Expression


Co-expression Network