XLOC_026585


Basic Information

Item Value
gene id XLOC_026585
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34947402 ~ 34948061 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053068
CATTTTCAGCTGCGCTTCAGCTCAAACATGGCAGACATTTTTGTCGGAAGGTAGAACTTGAAGAAGAGCAAGAATATTGATGAGTACATGAAAACCCTTGGTGTTGGCCTTGCCACGCGTCAAGTTGCCAACATGATCAAACCCACAACCATCATCTCCAAGGAGGGTGACGTTTTCACAATTAAAACCGCCAGCACTTTTAAATCCACAGAAATCAATTTCAAACTGGGAGAGTAGGTCAACGAGACCACTGCAGACTACCGAAAAGTCAAGTCTATTATAACTTTAGATGGAGGGAAGTTGTTGCATGTTCAGAAATGGGATGGTAAAAAGATGACCCTGCTCTGAGAAGTCAGTGACAATAGCCTCACTCTGACGTTGACACTTGGAGACGTCGTCTCCACACAACACTACATAAAAGCAGAATAAGGGGAAAGCTGAGTCTCAATCCGTCCTCATCAATGGTTATGTACATGTCCAATGTTTTTTCTGTGGTGTTCGTGCTGTCTTTTGCACCATTTCCCAAACAAACACTGAATAAATTCCAACTTCCAAACCTTCAAATTTCTGTATATGATCTTGTATTTCTGGGTGTATGACATGCCCGGCGGTCAGTGTTATTATAAATACGCATTTGGTCTACAGTAAATATGATTATGC
>TCONS_00051795
ATGGCAGACATTTTTGTCGGAAGGTAGAACTTGAAGAAGAGCAAGAATATTGATGAGTACATGAAAACCCTTGGTGTTGGCCTTGCCACGCGTCAAGTTGCCAACATGATCAAACCCACAACCATCATCTCCAAGGAGGGTGACGTTTTCACAATTAAAACCGCCAGCACTTTTAAATCCACAGAAATCAATTTCAAACTGGGAGAGTAGGTCAACGAGACCACTGCAGACTACCGAAAAGTCAAGTCTATTATAACTTTAGATGGAGGGAAGTTGTTGCATGTTCAGAAATGGGATGGTAAAAAGATGACCCTGCTCTGAGAAGTCAGTGACAATAGCCTCACTCTGACGTTGACACTTGGAGACGTCGTCTCCACACAACACTACATAAAAGCAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000096377

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053068 False 660 lncRNA 0.42 1 34947402 34948061
TCONS_00051795 True 397 unprocessed_pseudogene 0.44 1 34947638 34948034

Neighbor

gene id symbol gene type direction distance location
XLOC_026584 psmd11a coding downstream 130423 34801146 ~ 34816979 (-)
XLOC_026583 nsfa coding downstream 146361 34766989 ~ 34801041 (-)
XLOC_026582 thraa coding downstream 193797 34688022 ~ 34753605 (-)
XLOC_026581 znfl1 coding downstream 290657 34652144 ~ 34656745 (-)
XLOC_026580 NA coding downstream 305429 34641048 ~ 34641973 (-)
XLOC_026586 ndufab1b coding upstream 587060 35535121 ~ 35541381 (-)
XLOC_026587 dctn5 coding upstream 602809 35550870 ~ 35554809 (-)
XLOC_026588 NA coding upstream 617067 35565128 ~ 35574451 (-)
XLOC_026589 gng13b coding upstream 641151 35589212 ~ 35602233 (-)
XLOC_026590 caskin1 coding upstream 684712 35632773 ~ 35801146 (-)
XLOC_026572 NA non-coding downstream 806221 34139637 ~ 34141181 (-)
XLOC_026558 BX649502.11 non-coding downstream 860919 34086041 ~ 34086483 (-)
XLOC_026547 BX649502.5 non-coding downstream 882466 34063955 ~ 34064936 (-)
XLOC_026544 BX649502.10 non-coding downstream 888685 34058679 ~ 34058717 (-)
XLOC_026600 NA non-coding upstream 1372178 36320239 ~ 36323625 (-)
XLOC_026606 NA non-coding upstream 1635039 36583100 ~ 36587136 (-)
XLOC_026612 FO744883.1 non-coding upstream 1807972 36756033 ~ 36756149 (-)
XLOC_026617 NA non-coding upstream 2005564 36953625 ~ 36954088 (-)

Expression


Co-expression Network