XLOC_026587 (dctn5)


Basic Information

Item Value
gene id XLOC_026587
gene name dctn5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 35550870 ~ 35554809 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051798
GGAAGCGGAAATAGAGAGGGAGCGGTTGACAGCTGCCTGGATTTCTTAAGAGCTTCGCTAACAACATCATTGTGCAGAGATGGAGCTGtgtgaaatattatataataaggCAGAATACATCGAGACGGCATCAGGAAACAAAGTCAGCAGACAGTCAGTTCTTTGCGGCAGTCAAAACATCGTCCTCAATGGCAAAACGATTGTGATGAACGACTGTATCATCAGAGGAGATCTGGCCAATGTCAGAGTTGGGCGTCACTGTGTCATCAAAAGTCGCAGTGTGATCAGACCGCCATTTAAAAAGTTCAGCAAAGGTGTAGCGTTCTTCCCCTTGCACATTGGGGACCATGTGTTCATAGAGGAGGACTGTGTCGTCAACGCTGCACAGATAGGATCGTACGTCCACATTGGCAAGAACTGTGTGATTGGTCGCCGCTGTGTCTTGAAAGATTGCTGTAAGATTCTGGATAACACTGTCCTTCCCCCAGAGACAGTGGTGCCCCCATTTACAGTATTCTCTGGCTGTCCAGgtttaTTTTCAGGAGAGCTCCCTGAATGCACACAAGAACTGATGATCGACGTCACCAAGAGTTACTACCAGAAATTCCTCCCTCTCAGCCAGATCTAGGACCGCACTTCAGTTTGTGTCTCGCGCACTTGCATTCTGGGACCAAAGGAACTAATATGGACTAATATTTCCCAAACACGCCCTTATCCCTCTGGATTACAGTTGTAGATCTCAAACAAATGTCTCAAAAGAAATCCTCATGCTATAATCGTGACTTTGTAAACATAGAATATAAAATAAGTGAATTATACACAAAACACCATTTCATTTCTGCTTGTCATGTCAGTGTTTTTAGATTTACGTTAAAGCATCTAATGCCACTGGCTAGGACAAAATATCACAACGCAGTGATTAGCTGTTAGACTGAAGGgcctttatttattaaactgtacCATTTCTTCAACACTAAACATTTTCTGTATGCAAAGCCAGATTACAGatggaaataaatgtttttttt

Function

symbol description
dctn5 Orthologous to human DCTN5 (dynactin subunit 5).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
ko04962 Vasopressin-regulated water reabsorption
ko05132 Salmonella infection
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko03036 Chromosome and associated proteins
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-040718-201 Orthologous to human DCTN5 (dynactin subunit 5).

Ensembl:

ensembl_id ENSDARG00000003573

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051798 True 1028 mRNA 0.43 6 35550870 35554809

Neighbor

gene id symbol gene type direction distance location
XLOC_026586 ndufab1b coding downstream 9489 35535121 ~ 35541381 (-)
XLOC_026585 NA coding downstream 602809 34947402 ~ 34948061 (-)
XLOC_026584 psmd11a coding downstream 733891 34801146 ~ 34816979 (-)
XLOC_026583 nsfa coding downstream 749829 34766989 ~ 34801041 (-)
XLOC_026582 thraa coding downstream 797265 34688022 ~ 34753605 (-)
XLOC_026588 NA coding upstream 10319 35565128 ~ 35574451 (-)
XLOC_026589 gng13b coding upstream 34403 35589212 ~ 35602233 (-)
XLOC_026590 caskin1 coding upstream 77964 35632773 ~ 35801146 (-)
XLOC_026591 suz12a coding upstream 294583 35849392 ~ 35865040 (-)
XLOC_026592 rab11fip4a coding upstream 468459 36023268 ~ 36115354 (-)
XLOC_026580 NA non-coding downstream 908897 34641048 ~ 34641973 (-)
XLOC_026572 NA non-coding downstream 1409689 34139637 ~ 34141181 (-)
XLOC_026558 BX649502.11 non-coding downstream 1464387 34086041 ~ 34086483 (-)
XLOC_026547 BX649502.5 non-coding downstream 1485934 34063955 ~ 34064936 (-)
XLOC_026600 NA non-coding upstream 765430 36320239 ~ 36323625 (-)
XLOC_026606 NA non-coding upstream 1028291 36583100 ~ 36587136 (-)
XLOC_026612 FO744883.1 non-coding upstream 1201224 36756033 ~ 36756149 (-)
XLOC_026617 NA non-coding upstream 1398816 36953625 ~ 36954088 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_06171463_06172702 DCTN5.S, DCTN5 coding CI01000046 null 6171006 ~ 6174632 (-)