LOC110532903 (LOC106578061)


Basic Information

Item Value
gene id LOC110532903
gene name LOC106578061
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 6500762 ~ 6525335 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987191.1
TAAATCCTTTCAACGTGAATCACCCACGTGACTTTTTTGTGAAACTTCCTGTTCGCCGTCACCATAGAGACACGAGCGAGGAAGACGATGACTGGATGAAGCGTTGGCCAATCAGCGAGAAGAAAGATGCTTGGAGGCGGGAACTTGTCCCTCACTGCAACGCGAGCGAGCAGATCCTGTGACCGGTTTCGTTGCGGCTTTGGTTTTGAAAATTGTGGGTGCCCTGAATCGGTGAATTACGTGTGGACCATGCCTATACAATCCTTCTCCTTTCCTTTGCCTGAGACCAGGTTCTTCCAGGCTGGACAACATGTCTACAAGTTCAAGATCAGGGGAGGCAATAACtgcagTGAAGTGAAGGTGATGGGAGAAGAGTTTGTCAATCGGGAGTTGGAGAATACCATCAGAGCGGTGCTAGCCAACCTGGACTGTCTCCAGCCGTTCACTACCCCACACTTCACTGTCTACCCTTACAAGAGTAAGTGGAAGAGAGTGTCCAAGTTTAAATTTGAGAAGATGTCAGGAGAGAAGCTGTCTGCTTACCCCTACCTAGTCACTGTGTACAtagagaacaacacacacacagtgAACTTCTCAGACCAGGGGAAACGGAGGCAAAGAATGgCAGACTGTGTGGTATCAGATAGCCAGACCCCACAGAGTACAGtcggGGGCTCTGTGACCGGTGGCAGTGAGACCATAGAGGTCAGCGGGGGTCACGGAGAGGAAGAGGTGCATCCTGGAGCTGTAGAGGGCGACCCGGAGGACCCTGACCTGGACTCCAAGTCTCATGTGAGGCCAGGTTTGCTGGCCCGCCTTGTCAGtcaGGTGTTTCCATTCTCCATGTTCTTCAGAGAAAGCTAAGATGCTCAGGAACAACGGCTTCTGTAACCTTCTAGAACCTCTGTTGTGATCTGAATGTTAAAGTTCTGTTTTAGTTTCAGGCCCAAATGGTTACCTATTctgtatatagtgccctacttatAATGGTTGATGTTAGTTCATAGTGGAAGGCCCAAATGGTTACCTATTctgtatatagtgccctacttatAATGGTTGATGTTAGTTCATAGTGGAAGGCCCAAATGGTTACCTATTctgtatatagtgccctacttatAATGGTTGATGTTAGTTCATAGTGGAAGGCCCAAATGGTTACCTATTctgtatatagtgccctacttatAATGGTTGATGTTAGTTCATAGTGGAAGGCCCAAATGGTTACCTATTctgtatatagtgccctacttatAATGGTTGATGTTAGTTCATAGTGGAAGGCCCAAATGGTTACCTATTctgtatatagtgccctacttatAATGGTTGATGTTAGTTCATAGTGGAAGGCCCAAATGGTTACCTATTctgtatatagtgccctacttatAATGGTTGATGTTAGTTCATAGTGGAAGGCCCAAATGGTTACCTATTctgtatatagtgccctacttatAATGGTTGATGTTAGTTCATAGTGGAAGGCCCAAATGGTTACCTATTctgtatatagtgccctacttatAATGGTTGATGTTAGTTCATAGTGGAAGGCCCAAATGGTTACCTATTctgtatatagtgccctacttatAATGGTTGATGTTAGTTCATAGTGGAAGGCCCAAATGGTTACCTATTctgtatatagtgccctacttatAATGGTTGATGTTAGTTCATAGTGGAAGGTTTTGGAGTTTGGTTTTGATACATTTTGTAATAAATGATCTGAT
>TU873116
cagtcggGGGCTCTGTGACCGGTGGCAGTGAGACCATAGAGGTCAGCGGGGGTCACGGAGAGGAAGAGGTGCATCCTGGAGCTGTAGAGGGCGACCCGGAGGACCCTGACCTGGACTCCAAGTCTCATGTGAGGCCAGGTTTGCTGGCCCGCCTTGTCAGtcaGGTGTTTCCATTCTCCATGTTCTTCAGAGAAAGCTAAGATGCTCAGGAACAACGGCTTCTGTAACCTTCTAGAACCTCTGTTGTGATCTGAATGTTAAAGTTCTGTTTTAGTTTCAGGCCCAAATGGTTACCTATTctgtatatagtgccctacttatAATGGTTGATGTTAGTTCATAGTGGAAGGCCCAAATGGTTACCTATTctgtatatagtgccctacttatAATGGTTGATGTTAGTTCATAGTGGAAGGCCCAAATGGTTACCTATTctgtatatagtgccctacttatAATGGTTGATGTTAGTTCATAGTGGAAGGCCCAAATGGTTACCTATTctgtatatagtgccct

Function

NR:

description
membrane-anchored junction protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987191.1 False 1748 mRNA 0.44 9 6500762 6525335
TU873116 True 522 lncRNA 0.47 2 6501324 6502245

Neighbor

gene id symbol gene type direction distance location
gpha2 LOC106578061 coding downstream 9805 6481631 ~ 6490957 (-)
arl2 arl2 coding downstream 91194 6407522 ~ 6409568 (-)
LOC118966206 NA coding downstream 137710 6362989 ~ 6363052 (-)
LOC118966209 NA coding downstream 138194 6362505 ~ 6362568 (-)
LOC118966212 NA coding downstream 138514 6362177 ~ 6362248 (-)
badb LOC106578087 coding upstream 7828 6533163 ~ 6535751 (-)
LOC110510780 plcb3 coding upstream 159319 6636026 ~ 6834904 (-)
LOC110531366 LOC106578102 coding upstream 325862 6851197 ~ 6882912 (-)
LOC110531364 LOC106578119 coding upstream 360660 6885995 ~ 6907134 (-)
LOC118966154 NA coding upstream 429657 6954992 ~ 6957780 (-)
G766732 LOC106578083 non-coding downstream 7107 6425194 ~ 6493655 (-)
G766755 NA non-coding downstream 32287 6467684 ~ 6468475 (-)
G766749 NA non-coding downstream 36660 6457203 ~ 6464631 (-)
G766735 NA non-coding downstream 68111 6432298 ~ 6432651 (-)
G766725 NA non-coding downstream 89471 6411051 ~ 6411291 (-)
G766783 NA non-coding upstream 2542 6527877 ~ 6528679 (-)
G766701 NA non-coding upstream 4705 6530040 ~ 6533107 (-)
G766858 NA non-coding upstream 105104 6630439 ~ 6631134 (-)
G766870 NA non-coding upstream 143230 6668565 ~ 6668820 (-)
G766665 NA other downstream 135234 6340621 ~ 6365895 (-)
G766640 NA other downstream 244134 6251597 ~ 6262155 (-)
G766599 LOC106578100 other downstream 291553 6201369 ~ 6209209 (-)
G765579 LOC101077030 other downstream 1202325 5297476 ~ 5298437 (-)
G766850 LOC106578109 other upstream 86744 6612079 ~ 6613412 (-)
LOC110531380 LOC106578126 other upstream 440119 6963142 ~ 6969857 (-)
G767056 ovol1 other upstream 720309 7245644 ~ 7251075 (-)
LOC110510419 LOC106560462 other upstream 1587253 8112588 ~ 8155916 (-)
G766768 NA non-coding upstream 2317 6504562 ~ 6504893 (-)

Expression


Co-expression Network