LOC110531366 (LOC106578102)


Basic Information

Item Value
gene id LOC110531366
gene name LOC106578102
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 6851197 ~ 6882912 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987201.1
GCCTTGCACAGTAAACTCCCATCCAGCTGGCGGCCCTGTTGTGTTTCTGGGTTCGTCACCAACTAGAACGTCCCAAGATTCCTTGACTAGAACACGGAAGTAGGATTGGTAACGAGTTTTTATTGTTCCTTGTGTGCAGTAAAGAaagacatactgactcaactcaaTAGGCTACCCATCTCTAATTTGACAGAAAATGTCTAAACTACAGATGTTGCGTGTGTTTTTAAATGATCGTTTATCGGCGGCTGCTGTGGATATTTTTGGTGCAGTTGAGAAAACGGTAGTGGAGTACCAGGAGGAGAATGATCGGCTACGGAGACTGCTGCGGAGGACACCGGTGATACCTCTACGTCAAATAGAACCCgtgcagctctctgtctctgaagaGGAGGTTCCCTCTGAGCAACAGCACAGTGAGCAGGAGTGGAGTCCCAGTCTGGGGCAGAAGGACCCAGAGACCAAacagattaaagaggaacaggaggaagtcaggaccagtcaggaggaagagcagcttcaaGGGGTGGAGCCTGATATCATAGAGTTCATATTTACTCCTCCTTGTGTGAAAAGTGAATGTGATCAGGAGGACCCACGTCAAGATCCCATACTAGCTGAACACCCAACTCTCCTGAAAATGTCTAAATTACAGTTGTTTCAAGAGTTTTTAAATGAGCGTTTAACGGCGTTTGCTGCTGTGGAGATTTCCGGGGAATTTGCTAAAATGATAGTGGAGTACCAAGAGGAGAATGATCGGCTACGGAGACTGCTGCGGATCACACCAGAGATACAGCTATGTAGAATAGactccctgcagctctctgtctctgaagaGGAGGTTCCCCCTGAGCAGCAGCACTGTGAGCAGGAGTGGAGCCCCAGTCTGGGGCAGAAGGACCCAGAGACCATACAGATTAAAGAGGAACAAGAGGAAGTCAGGACCagtcaggaggaagagcagcttcaaGGGGTTGAGCCTGATATAATAGGGTTCATTTTCTCTCCTTCCTGTGTGAAAAGTGAATGTGATCAGGAGTACCAAACCCAGACTGTGGAGAACATAGAGAGAGTCTCTAAACTAGTGGATCTCAAACCTTCTGGCACTGTGACCCACCTAAAGGGTTTCAACATTCCCTGTGACCCTCCAGATAATCAGAACAATGCCTACAGCCACAGTACAGCCATAAGCAGTGACCCAGTAGAACTTGACAGTAGCCCAACATTGGGGGAAAACTCTTCCAAACCCAGCACCACGCCTAGAAAAACTCACCACTGCCGTGACTGTGGAGAAACTTTTGCTCTGAAAGCTGATCTGCAGAGACATGTGACTCTCACCAAGAAGAGACCCAGTGAATGTAGATTCTGTAAGAAACGCTACAACTCCACCTGTAAACTGAAGGCCCATGTCCGACTCTGTCACAGTGGGAAACCCTGTGTCTGCCCTGTTTGTGGAAAGATCTTCAAACAAAAAGGACATCTGTCCAGGCACATGaggattcacacaggagagaaaccgtttAGTTGTGGTGACTGTGGGAAGTGCTTCCGTCTGAAGGGGCATCTAACCAGGCACAAACTGATTCACACAGGGGAAAATCCATTTAGCTGTGGTGATTGTGGGAAAAGATTCAGTCTCAAGCAGCATCTAACCAGGCACAAActgattcacacaggagagaaaccttttagctgtgGCGACTGCGGGAAAAGCTTCAATCTCAAGAAGACACTAACTGAACACATacggactcacacaggagagaaaccttttagctgtgGTGATTGTGGAAAAAGCTTTAGTGTCAAGAAGACACTAATTGAACATATACgtactcacacaggagagaagccatatagctgtggtgactgtgggaaaagcttcagtGTCAATAGGAACCTAACTAAGCACAaactgactcacacaggagagaaacaacaTGGCTGCTCCGTCTGTGGTAAAAGATTCATTCAGAAGACTAATCTGCTGAGGCATGTCAAAAACAACCACAAAGAATGAAAACAAGACAAAGGAACAAAGAAAGTAAATGAGGACACAGAGAGGGGACTAAGAGATTATTGAGATACACCCAAGATCCCCTGTGGACCAACTCTAACTGGTTCTCCTGATCCTGCTCAGTCCAATGTCACAGTAATGATATAATGTGGCTGTTGTCTGAACCTAACAGGTAATGTTGCTACTCTTTGTGTAGGAAATGGACAATCTGCAGTTCAGACAACCACCAGTTTTTAGGTgaacactcaaattcatagacggaTATCAAATTTGCCTGTTGCTACTTTGTTCCTTAAAGGAACCATCAGAGGTGTCCACTACAATGCAAGATTTAGTTAGCTAGAGATTTAGTCAGCTAGAGATTTAGTTATCTAGATATTTAGTCAGCTAGAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGAGATTTAGTTATCTAGAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGAGATTTAGTCAGCTAAATTTAGTCAGCTAGAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGATTTAGTCAGCTAGAGAGTTAGTCAGCTAGAGATTTAGTCAGCTAGATTTAGTCAGCTAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGAGATTTAGTAAGCTAGAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGTTAACTAAATAAACGTATGGAGAAAGAGATAAACACCAAATGGGCGTGGTCTAATTGACTCAACGACCAAACAACGTAAGTAAGTGTAGATTTCTAAATGAACCAGAGGATCTCTAGGTATTTCTGGTTGATTGTCAAAGTGATCTGTTtcattgaacccccccccccccccc
>XM_036987203.1
GTTtggggtaatccaaaagttacactACCGATTACAATTTtatacaggtaactagtaactgtaacggattacatttagaaaggaacccacccaaccctgagcATACGGTATAGATAATATCcacaaagagagaaaaacagaccACAGAAATAACGCCTTTAGTCAGAAGAATAAAAAGACAATGTGAACAACACTGTCTGAAAGGAAAGTAACTCCAGACCATTCATACTGTGGGTCTCAGATAAATACATATACTGTACCACGGACTTAATGTTGTAAAACAGTGTatgtaaataaagtttgatttgatttgaatgatgaCGTAATGATCAAACCGTACAGAGTATTGTAGGAAATTCACAGTTCTGCTGTTCAAAGTCTGTTTAATTTTCCCCTTCATTAGAAACAGCAATATCTGGTCATTTGATTTAGGTCAGGCTGATGTAATTGATacatgaaatgaaatgaaaaacaATTCCAGAAAAGGTATCCTTGCATTTATCCAAGAGTATTTCTCATAAATTCTGACCTAATGCTGCTCATTCATCATGTTGATTTAATCTTGTATGGAGTAATGATAAACTGTTGCCTCCTGGGGAAGaacagattctcccagatcatcCTATACTTATGATAACCACTATTTGTCTACATGTAGTCGTCGTTTTCCTTTACTACTGGTCTGTAGGCTGCCTTGCACAGTAAACTCCCATCCAGCTGGCGGCCCTGTTGTGTTTCTGGGTTCGTCACCAACTAGAACGTCCCAAGATTCCTTGACTAGAACACGGAAGTAGGATTGGAAACGAGTTTTTATTGTTCTTTGTGTGCAGTAAAGAAAGACATACTTACTAAACTAAATAGGCTACCCATCTCTAATTTTATTAAAATGTCTAAACTACagatgttgtgtgtgtttttaaatgaGCGTTTATCGGCGGCTGCTGTGGATATTTTTGGTGCAGTTGAGAAAACGGTAGTGGAGTACCAGGAGGAGAATGATCGGCTACGGAGACTGCTGCGGAGGACACCAGAGATACAACTATGTCGAATAGAACCCgtgcagctctctgtctctgaagaGGAGGTTCCCTCTGAGCAACAGCACAGTGAGCAGGAGTGGAGTCCCAGTCTGGGGCAGAAGGACCCAGAGACCAAacagattaaagaggaacaggaggaagtcaggaccagtcaggaggaagagcagcttcaaGGGGTGGAGCCTGATATCATAGAGTTCATATTTACTCCTCCTTGTGTGAAAAGTGAATGTGATCAGGAGGACCCACGTCAAGATCCCATACTAGCTGAACACCCAACTCTCCTGAAAATGTCTAAATTACAGTTGTTTCAAGAGTTTTTAAATGAGCGTTTAACGGCGTTTGCTGCTGTGGAGATTTCCGGGGAATTTGCTAAAATGATAGTGGAGTACCAAGAGGAGAATGATCGGCTACGGAGACTGCTGCGGATCACACCAGAGATACAGCTATGTAGAATAGactccctgcagctctctgtctctgaagaGGAGGTTCCCCCTGAGCAGCAGCACTGTGAGCAGGAGTGGAGCCCCAGTCTGGGGCAGAAGGACCCAGAGACCATACAGATTAAAGAGGAACAAGAGGAAGTCAGGACCagtcaggaggaagagcagcttcaaGGGGTTGAGCCTGATATAATAGGGTTCATTTTCTCTCCTTCCTGTGTGAAAAGTGAATGTGATCAGGAGTACCAAACCCAGACTGTGGAGAACATAGAGAGAGTCTCTAAACTAGTGGATCTCAAACCTTCTGGCACTGTGACCCACCTAAAGGGTTTCAACATTCCCTGTGACCCTCCAGATAATCAGAACAATGCCTACAGCCACAGTACAGCCATAAGCAGTGACCCAGTAGAACTTGACAGTAGCCCAACATTGGGGGAAAACTCTTCCAAACCCAGCACCACGCCTAGAAAAACTCACCACTGCCGTGACTGTGGAGAAACTTTTGCTCTGAAAGCTGATCTGCAGAGACATGTGACTCTCACCAAGAAGAGACCCAGTGAATGTAGATTCTGTAAGAAACGCTACAACTCCACCTGTAAACTGAAGGCCCATGTCCGACTCTGTCACAGTGGGAAACCCTGTGTCTGCCCTGTTTGTGGAAAGATCTTCAAACAAAAAGGACATCTGTCCAGGCACATGaggattcacacaggagagaaaccgtttAGTTGTGGTGACTGTGGGAAGTGCTTCCGTCTGAAGGGGCATCTAACCAGGCACAAACTGATTCACACAGGGGAAAATCCATTTAGCTGTGGTGATTGTGGGAAAAGATTCAGTCTCAAGCAGCATCTAACCAGGCACAAActgattcacacaggagagaaaccttttagctgtgGCGACTGCGGGAAAAGCTTCAATCTCAAGAAGACACTAACTGAACACATacggactcacacaggagagaaaccttttagctgtgGTGATTGTGGAAAAAGCTTTAGTGTCAAGAAGACACTAATTGAACATATACgtactcacacaggagagaagccatatagctgtggtgactgtgggaaaagcttcagtGTCAATAGGAACCTAACTAAGCACAaactgactcacacaggagagaaacaacaTGGCTGCTCCGTCTGTGGTAAAAGATTCATTCAGAAGACTAATCTGCTGAGGCATGTCAAAAACAACCACAAAGAATGAAAACAAGACAAAGGAACAAAGAAAGTAAATGAGGACACAGAGAGGGGACTAAGAGATTATTGAGATACACCCAAGATCCCCTGTGGACCAACTCTAACTGGTTCTCCTGATCCTGCTCAGTCCAATGTCACAGTAATGATATAATGTGGCTGTTGTCTGAACCTAACAGGTAATGTTGCTACTCTTTGTGTAGGAAATGGACAATCTGCAGTTCAGACAACCACCAGTTTTTAGGTgaacactcaaattcatagacggaTATCAAATTTGCCTGTTGCTACTTTGTTCCTTAAAGGAACCATCAGAGGTGTCCACTACAATGCAAGATTTAGTTAGCTAGAGATTTAGTCAGCTAGAGATTTAGTTATCTAGATATTTAGTCAGCTAGAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGAGATTTAGTTATCTAGAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGAGATTTAGTCAGCTAAATTTAGTCAGCTAGAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGATTTAGTCAGCTAGAGAGTTAGTCAGCTAGAGATTTAGTCAGCTAGATTTAGTCAGCTAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGAGATTTAGTAAGCTAGAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGATTTAGTCAGCTAGAGATTTAGTCAGCTAGTTAACTAAATAAACGTATGGAGAAAGAGATAAACACCAAATGGGCGTGGTCTAATTGACTCAACGACCAAACAACGTAAGTAAGTGTAGATTTCTAAATGAACCAGAGGATCTCTAGGTATTTCTGGTTGATTGTCAAAGTGATCTGTTtcattgaacccccccccccccccc
>XM_036987200.1
CGTCGTTTTCCTTTACTACTGGTCTGTAGGCTGCCTTGCACAGTAAACTCCCATCCAGCTGGCGGCCCTGTTGTGTTTCTGGGTTCGTCACCAACTAGAACGTCCCAAGATTCCTTGACTAGAACACGGAAGTAGGATTGGAAACGAGTTTTTATTGTTCTTTGTGTGCAGTAAAGAAAGACATACTTACTAAACTAAATAGGCTACCCATCTCTAATTTTATTAAAATGTCTAAACTACagatgttgtgtgtgtttttaaatgaGCGTTTATCGGCGGCTGCTGTGGATATTTTTGGTGCAGTTGAGAAAACGGTAGTGGAGTACCAGGAGGAGAATGATCGGCTACGGAGACTGCTGCGGAGGACACCAGAGATACAACTATGTCGAATAGaaCCCGTGCAGCCCTCTGTCTCTGAAGAGGAGGTTCCCCCTGAGCAACAGCACTGTGAGCAGGAGTGGAGTCCCAGTCTGGGACAGAAGGACCCAGAGACCAAacagattaaagaggaacaggaggaagtcaggaccagtcaggaggaagagcagcttcaaGGGGTGGAGCCTGATATCATAGAGTTCATATTTACTCCTCCTTGTGTGAAAAGTGAATGTGATCAGGAGGACCCACGTCAAGATCCCATACTAGCTGAACACCCAACTCTCAGTCCACCTAAAATGTCTAAATTACAGTCGTTTCAAGAGTTTTTAAATGAGCGTTTAACGGCGTTTGCTGCTGTGGAGATTTCCGGGGAATTTGCTAAAATGATAGTGGAGTACCAAGAGGAGAATGATCGGCTACGGAGACTGCTGCGGATCACACCGGAGATACAACTATGTAGAATAGactccctgcagctctctgtctctgaagaAGAGGTTCCCCCTGAGCAGCAGCACTGTGAGCAGGAGTGGAGCCCCAGTCTGGGACAGAAGGACCCAGAGACCAAacagattaaagaggaacaggaggaagtcaggaccagtcaggaggaagagcagcttcaaGGTCTAGAGCCTGATATCATGAAGTTCATATTCACTCCTTCCTGTGTGAAAAGTGAATGTGATCTGGAGGACCCACTTCAGTCCTTGACTCTTCCCCAAACCCAGActgtggagaacagagagagagactctaaaCCAGTGGATCTGAACCCTTTTGTCACTGTGACCCACATTAAGGGTCTCAACATTCCCTGTGACCCTCCAGATAATCAAAACAATGCCTCCAGACACAGTTCAGCTGTAAGCAGCTACACAGTAGGACTTGAAAGCAGTCCACCATTGGATCCTCGTCCACCATTTGAAAAACACTGTTCCAAACCCAGCACCACATCTAGAAAAACTCCCAGCTGCCGTGACTGTGGTGAAACGTTTGCTAAAAAAGCTGACCTGAAGAGACATGTGACTCTCACCAAGAACAGACCCAGTGAATGTCGGTTCTGCAAGAAAAGCTTCAGCTCCACCTGTAAACTGAAGGCCCATGTCCGACTCTGTCACAGTGGGAAACCCTGTGTCTGCCCTGTTTGTGGAATGACCTTCAAACAAAAAGGAGCTCTGTCCAATCACATGaggattcacacaggagagaaaccttttagctgcggtgactgtgggaaaagcttcaatcGGAAGATGAGCCTAACTGAACATAAActgattcacacaggagagaaaccatttagctgtggtgactgtgggaaaagcttcaatcGGATGGGGCACCTAAACATGCACAAagtgactcacacaggagagaaaccatttagctgtgtTGACTGCGGGAAAAGCTTCAATCGAAAGGGGCACCTAACCATGCACAAActgattcacacaggagagaaaccatttagctgtgaTGACTGCGGGAAAAGCTTCAATCGGAAGGGGCACCTAACCATGCACAAtctgactcacacaggagagaaaccatttagctgtggtgactgtgggaaaagcttcaatcGGAAGGGGCACCTAACCATGCACAAagtgactcacacaggagagaaagcatttagctgtggtgactgtgggaaaagcttcaatcAGAAAGGGGACCTAAGGAGGCACAAActgattcacacaggagagaaacaccATGGCTGCTCCGTCTGTGGTAAAAGATTCACTCAGAAGACGAATCTGCTGAGGCATGTGGATAAAGTCCACAAAGGAAAGAAACAGGACAGAAATTGAAAGAAGAAAGGACAATAGAACAAAGAGATtgtctgtcaggctgtatcacaaccgaccgtgattgggagtcccatagggcggcgcacaattggcccagcgttgtccgggattggccggtgtaggccgtcattgtaagtaagaatttgtttttaactgacttgcctagttttaaaaaaaaggtCAGGTAAGTGAATAAAAAGGCAGGATGTGGATAAATCTCTTAGGAAGTAACAGCGATATGGCCCTCATATGCAGACGACATGGCTCTGGTTGCTTGCCTGGAGGTCAAGTCCATCTCCAGCTACTCCCAGTTCATTGACTGCCTCTTGACGTGGTTTGACAATATCTTAGGAGCTCAGTTTGGGTCTCAACTTACTATTAAGActcagaatagtagaatacaccaggtCCAATTTAgacatttggttgtgcatcagcactttgtcactgacagtcactcaattagcgatgtcagacaaagcaaaaacaaatcttcagaaatgtttgcaa
>TU873185
GATTGGAAACGAGTTTTTATTGTTCTTTGTGTGCAGTAAAGAAAGACATACTTACTAAACTAAATAGGCTACCCATCTCTAATTTTATTAAAATGTCTAAACTACagatgttgtgtgtgtttttaaatgaGCGTTTATCGGCGGCTGCTGTGGATATTTTTGGTGCAGTTGAGAAAACGGTAGTGGAGTACCAGGAGGAGAATGATCGGCTACGGAGACTGCTGCGGAGGACACCAGAGATACAACTATGTCGAATAGaaCCCGTGCAGCCCTCTGTCTCTGAAGAGGAGGTTCCCCCTGAGCAGCAGCACTGTGAGCAGGAGTGGAGCCCCAGTCTGGGACAGAAGGACCCAGAGACCAAacagattaaagaggaacaggaggaagtcaggaccagtcaggaggaagagcagcttcaaGGTCTAGAGCCTGATATCATGAAGTTCATATTCACTCCTTCCTGTGTGAAAAGTGAATGTGATCTGGAGGACCCACTTCAGTCCTTGACTCTTCCCCAAACCCAGActgtggagaacagagagagagactctaaaCCAGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987201.1 False 3185 mRNA 0.44 3 6851197 6863016
XM_036987203.1 False 3875 mRNA 0.42 3 6851197 6882912
XM_036987200.1 False 2711 mRNA 0.47 3 6871272 6882253
TU873185 True 559 TUCP 0.46 3 6872836 6882118

Neighbor

gene id symbol gene type direction distance location
LOC110510780 plcb3 coding downstream 16293 6636026 ~ 6834904 (-)
badb LOC106578087 coding downstream 315446 6533163 ~ 6535751 (-)
LOC110532903 LOC106578061 coding downstream 325862 6500762 ~ 6525335 (-)
gpha2 LOC106578061 coding downstream 360240 6481631 ~ 6490957 (-)
arl2 arl2 coding downstream 441629 6407522 ~ 6409568 (-)
LOC110531364 LOC106578119 coding upstream 3083 6885995 ~ 6907134 (-)
LOC118966154 NA coding upstream 72080 6954992 ~ 6957780 (-)
LOC110531380 LOC106578126 coding upstream 80230 6963142 ~ 6969857 (-)
LOC110531367 LOC106578116 coding upstream 87946 6970858 ~ 7054255 (-)
LOC110531378 LOC106578114 coding upstream 171923 7054835 ~ 7065193 (-)
G766903 NA non-coding downstream 30800 6817979 ~ 6820397 (-)
G766904 NA non-coding downstream 31308 6818396 ~ 6819889 (-)
G766899 NA non-coding downstream 48247 6794779 ~ 6802950 (-)
G766897 NA non-coding downstream 58019 6792346 ~ 6793178 (-)
G766888 NA non-coding downstream 60184 6767779 ~ 6791013 (-)
G766944 NA non-coding upstream 48692 6931604 ~ 6932670 (-)
G766959 NA non-coding upstream 93751 6976663 ~ 6978236 (-)
G766961 NA non-coding upstream 99077 6981989 ~ 6982190 (-)
G766964 NA non-coding upstream 101228 6984140 ~ 6984399 (-)
G766965 LOC106578116 non-coding upstream 101760 6984672 ~ 6985349 (-)
G766850 LOC106578109 other downstream 237785 6612079 ~ 6613412 (-)
G766749 NA other downstream 386566 6457203 ~ 6464631 (-)
G766665 NA other downstream 485669 6340621 ~ 6365895 (-)
G766640 NA other downstream 594569 6251597 ~ 6262155 (-)
G766599 LOC106578100 other downstream 641988 6201369 ~ 6209209 (-)
G767056 ovol1 other upstream 362732 7245644 ~ 7251075 (-)
LOC110510419 LOC106560462 other upstream 1229676 8112588 ~ 8155916 (-)
G768390 NA other upstream 1306531 8189443 ~ 8191898 (-)
LOC118936684 LOC106578100 other upstream 1338619 8221531 ~ 8253809 (-)
G766915 NA non-coding downstream 17211 6854776 ~ 6855625 (-)

Expression


Co-expression Network