LOC110531380 (LOC106578126)


Basic Information

Item Value
gene id LOC110531380
gene name LOC106578126
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 6963142 ~ 6969857 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987204.1
AGGCTGCCTTGCACAGTAAACTCCCATCCAGCTGGCGGCCCTGTTGTGTTTCTGGGTTCGTCACCAACTAGAACGTCCCAAGATTCCTTGACTAGAACACGGAAGTAGGATTGGAAACGAGTTATTTTTTCTGTTCCTTGTGTTGAGTAAAGAaagacatactgactcaactcaaCAGGCTACCCATCTCTAATTTGACAGAAAATGTCTAAACTACagatgttgtgtgtgtttttaaatgaTCGTTTATCGGCGGCTGCTGTGGATATTTTTGGTGCAGTTGAGAAAACGGTAGTGGAGTACCAGGAGGAGAATGATCGGCTACGGAGACTGCTGCGGAGGACACCAGAGATACAACTATGTCGAATAGAACCCgtgcagctctctgtctctgaagaGGAGGTCACCTCTGAGCAACAGCACTGTGAGCAGGAGTGGAGCCCCAGTCTGGGGCAGAAGGACCCAGAGACCAAacagattaaagaggaacaggaggaagtcaggaccagtcaggaggaagagcagcttcaaGGGGTGGAGCCTGATATCATAGAGTTCATATTTACTCCTCCTTGTGTGAAAAGTGAATGTGATCAGGAGGACCCACGTCAAGATCCCATACTTGCTGAACACCCAACTCTCAGTCCACCTAAAATGTCTAAATTACAGTTGTTTCAAGAGTTTTTAAATGAGCGTTTAACGGCGTTTGCTGCTGTGGAGATTTCCGGGGAATTTGCGAAAGCAGTAGCAGAGTACCAGGAAGAGAATGATCGGCTACGGAGACTGCTGCGGATCACACCGGAGattaaactatgtagaataggtTTGTATGTACAGAAACTGAAAGACTCcctgcagctctctgtctctgaagaGGAGGTTCCCCCTGAACAGCAGCACTGTGAGCAGGAGTGGAGCCCCAGTCTGGGGCAGGAGGACCCAGAGCCCACACAGATTAAAGAGGAACTCGGGACCAatcaggaggaagagcagcttcaaGGGCTCTTTGATACCAAAGACTCCATATTCACTCCTTCCTGTGTGAAAAGTGAATGTGATCAGGAGGACCCACTTCAGTCCTTGACTCTTCCCCAAACCCAGActgtggagaacagagagagtcatTCTAAACCAGTGGATCCCAAGCCTTTGTCCAAGCACATGaggattcacacaggagagaaaccatttatctgtggtgactgtgggaagagctttATTCGCAAGGCGCACCTAACCAGGCATAaactgactcacacaggagagaaaccattctcctgtggtgactgtgggaagagcttcCGTCTCAAAGGGAACCTAACCACTCATAAACTGACTCACACCAGAGAGAAATcatttagctgtggtgactgtgggaagagcttcCGTCTCAAAGGGAACCTAACCACTCATAaactgactcacacaggagagaaaccatttagctgtggtgactgtgggaaaagcttcaatcGTAAGGTGAGCCTAACTGAACATAAattgactcacacaggagagaaaccatttagctgtggtgactgtgggaaaagcttcatTCGGAAGGTGCATCTAACTGAACATCAACTgactcacacaggggagaaaccattcACCTGTGATGACTGTGGGAAAAGATTTATTCAGAAGAGGGACCTGAGGAGACATATActgattcacacaggagagaaaccattcaCCTGTGGTGACTGCGGGAAAAGCTTCAATCGAAAGGGGCATCTAACCATGCATAaactgactcacacaggagagaaaccattcacctgtggtgactgtgggaaaagcttcaatcGAAAGGGGCACCTAACCATGCATAaactgactcacacaggagagaaaccattcacctgtggtgactgtgggaagagctttATTCAGAGGAGGGACCTAAGGAGGCATATActgattcacacaggagagaagctaTTTAGCTGTGTTGACTGAGGAAAAAACTTCAATCAGAAACAACATGGCTGCTTAGTCTGATAATATATTAATTCAGAAGACTAATCTGCTAACACGTGAAAAACATCCACAAAGACTGTAAATgaggacacagagaggagactaaGAGTATTGAGATACACCCAAGATCCCCTGTGGACCAACTCTAACTGGTCCTCCTGATCCTGCTCAGTCCAATGTCACAGTAATTATATAATGGGACTGTTGTCTGAACCTAACAGGCAATGTTGCTGCTCTTTGTGTATGAAATGGACAATTTGCAGTTCAGACAACCACCAGTTTTTAGGTGAACAACTGAGGGATGATGTTGGAGAGTTGTGAACACTCAATGTCGTAGTCCGACATGGATATAAGATGTCCAGATCAGATGCAGGTTGCCCAATAGGCGGCCCGTGGGGGATTTATTtggcccccaagttttctgagcaaaacaaGATAATATATAGAATTTTATTTTTTTGGTTCGTTGGATATTTATTTTATTAAGTGCCAGTagaaggcactctttcctctggtctaaaaacatatcccaatgccccagggcagtgattggggacactgccctgtgtagggtgccgtctttcggatgggacgttaaacaggtgtcctgactctctgaggtcattaaagatcc
>XM_036987205.1
GGCTGCCTTGCACAGTAAACTCCCATCCAGCTGGCGGCCCTGTTGTGTTTCTGGGTTCGTCACCAACTAGAACGTCCCAAGATTCCTTGACTAGAACACGGAAGTAGGATTGGAAACGAGTTATTTTTTCTGTTCCTTGTGTTGAGTAAAGAaagacatactgactcaactcaaCAGGCTACCCATCTCTAATTTGACAGAAAATGTCTAAACTACagatgttgtgtgtgtttttaaatgaTCGTTTATCGGCGGCTGCTGTGGATATTTTTGGTGCAGTTGAGAAAACGGTAGTGGAGTACCAGGAGGAGAATGATCGGCTACGGAGACTGCTGCGGAGGACACCAGAGATACAACTATGTCGAATAGAACCCgtgcagctctctgtctctgaagaGGAGGTCACCTCTGAGCAACAGCACTGTGAGCAGGAGTGGAGCCCCAGTCTGGGGCAGAAGGACCCAGAGACCAAacagattaaagaggaacaggaggaagtcaggaccagtcaggaggaagagcagcttcaaGGGGTGGAGCCTGATATCATAGAGTTCATATTTACTCCTCCTTGTGTGAAAAGTGAATGTGATCAGGAGGACCCACGTCAAGATCCCATACTTGCTGAACACCCAACTCTCAGTCCACCTAAAATGTCTAAATTACAGTTGTTTCAAGAGTTTTTAAATGAGCGTTTAACGGCGTTTGCTGCTGTGGAGATTTCCGGGGAATTTGCGAAAGCAGTAGCAGAGTACCAGGAAGAGAATGATCGGCTACGGAGACTGCTGCGGATCACACCGGAGattaaactatgtagaatagACTCcctgcagctctctgtctctgaagaGGAGGTTCCCCCTGAACAGCAGCACTGTGAGCAGGAGTGGAGCCCCAGTCTGGGGCAGGAGGACCCAGAGCCCACACAGATTAAAGAGGAACTCGGGACCAatcaggaggaagagcagcttcaaGGGCTCTTTGATACCAAAGACTCCATATTCACTCCTTCCTGTGTGAAAAGTGAATGTGATCAGGAGGACCCACTTCAGTCCTTGACTCTTCCCCAAACCCAGActgtggagaacagagagagtcatTCTAAACCAGTGGATCCCAAGCCTTTGTCCAAGCACATGaggattcacacaggagagaaaccatttatctgtggtgactgtgggaagagctttATTCGCAAGGCGCACCTAACCAGGCATAaactgactcacacaggagagaaaccattctcctgtggtgactgtgggaagagcttcCGTCTCAAAGGGAACCTAACCACTCATAAACTGACTCACACCAGAGAGAAATcatttagctgtggtgactgtgggaagagcttcCGTCTCAAAGGGAACCTAACCACTCATAaactgactcacacaggagagaaaccatttagctgtggtgactgtgggaaaagcttcaatcGTAAGGTGAGCCTAACTGAACATAAattgactcacacaggagagaaaccatttagctgtggtgactgtgggaaaagcttcatTCGGAAGGTGCATCTAACTGAACATCAACTgactcacacaggggagaaaccattcACCTGTGATGACTGTGGGAAAAGATTTATTCAGAAGAGGGACCTGAGGAGACATATActgattcacacaggagagaaaccattcaCCTGTGGTGACTGCGGGAAAAGCTTCAATCGAAAGGGGCATCTAACCATGCATAaactgactcacacaggagagaaaccattcacctgtggtgactgtgggaaaagcttcaatcGAAAGGGGCACCTAACCATGCATAaactgactcacacaggagagaaaccattcacctgtggtgactgtgggaagagctttATTCAGAGGAGGGACCTAAGGAGGCATATActgattcacacaggagagaagctaTTTAGCTGTGTTGACTGAGGAAAAAACTTCAATCAGAAACAACATGGCTGCTTAGTCTGATAATATATTAATTCAGAAGACTAATCTGCTAACACGTGAAAAACATCCACAAAGACTGTAAATgaggacacagagaggagactaaGAGTATTGAGATACACCCAAGATCCCCTGTGGACCAACTCTAACTGGTCCTCCTGATCCTGCTCAGTCCAATGTCACAGTAATTATATAATGGGACTGTTGTCTGAACCTAACAGGCAATGTTGCTGCTCTTTGTGTATGAAATGGACAATTTGCAGTTCAGACAACCACCAGTTTTTAGGTGAACAACTGAGGGATGATGTTGGAGAGTTGTGAACACTCAATGTCGTAGTCCGACATGGATATAAGATGTCCAGATCAGATGCAGGTTGCCCAATAGGCGGCCCGTGGGGGATTTATTtggcccccaagttttctgagcaaaacaaGATAATATATAGAATTTTATTTTTTTGGTTCGTTGGATATTTATTTTATTAAGTGCCAGTagaaggcactctttcctctggtctaaaaacatatcccaatgccccagggcagtgattggggacactgccctgtgtagggtgccgtctttcggatgggacgttaaacaggtgtcctgactctctgaggtcattaaagatc
>TU873176
tcaactcaaCAGGCTACCCATCTCTAATTTGACAGAAAATGTCTAAACTACagatgttgtgtgtgtttttaaatgaTCGTTTATCGGCGGCTGCTGTGGATATTTTTGGTGCAGTTGAGAAAACGGTAGTGGAGTACCAGGAGGAGAATGATCGGCTACGGAGACTGCTGCGGAGGACACCAGAGATACAACTATGTCGAATAGAACCCgtgcagctctctgtctctgaagaGGAGGTCACCTCTGAGCAACAGCACTGTGAGCAGGAGTGGAGCCCCAGTCTGGGGCAGAAGGACCCAGAGACCAAacagattaaagaggaacaggaggaagtcaggaccagtcaggaggaagagcagcttcaaGGGGTGGAGCCTGATATCATAGAGTTCATATTTACTCCTCCTTGTGTGAAAAGTGAATGTGATCAGGAGGACCCACGTCAAGATCCCATACTTGCTGAACACCCAACTCTCAGTCCACCTAAAATGTCTAAATTACAGTTGTTTCAAGAGTTTTTAAATGAGCGTTTAACGGCGTTTGCTGCTGTGGAGATTTCCGGGGAATTTGCGAAAGCAGTAGCAGAGTACCAGGAAGAGAATGATCGGCTACGGAGACTGCTGCGGATCACACCGGA

Function

NR:

description
uncharacterized protein LOC110531366

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987204.1 False 2617 mRNA 0.46 3 6963142 6969857
XM_036987205.1 False 2591 mRNA 0.46 3 6963143 6969856
TU873176 True 637 TUCP 0.48 2 6965454 6969691

Neighbor

gene id symbol gene type direction distance location
LOC118966154 NA coding downstream 5362 6954992 ~ 6957780 (-)
LOC110531364 LOC106578119 coding downstream 56008 6885995 ~ 6907134 (-)
LOC110531366 LOC106578102 coding downstream 80230 6851197 ~ 6882912 (-)
LOC110510780 plcb3 coding downstream 128238 6636026 ~ 6834904 (-)
badb LOC106578087 coding downstream 427391 6533163 ~ 6535751 (-)
LOC110531367 LOC106578116 coding upstream 1001 6970858 ~ 7054255 (-)
LOC110531378 LOC106578114 coding upstream 84978 7054835 ~ 7065193 (-)
LOC110531373 LOC106578114 coding upstream 98670 7068527 ~ 7071119 (-)
LOC118966172 NA coding upstream 102100 7071957 ~ 7074751 (-)
tmem179ba t179b coding upstream 391052 7360909 ~ 7379032 (-)
G766944 NA non-coding downstream 30472 6931604 ~ 6932670 (-)
G766915 NA non-coding downstream 107517 6854776 ~ 6855625 (-)
G766903 NA non-coding downstream 142745 6817979 ~ 6820397 (-)
G766904 NA non-coding downstream 143253 6818396 ~ 6819889 (-)
G766899 NA non-coding downstream 160192 6794779 ~ 6802950 (-)
G766959 NA non-coding upstream 6806 6976663 ~ 6978236 (-)
G766961 NA non-coding upstream 12132 6981989 ~ 6982190 (-)
G766964 NA non-coding upstream 14283 6984140 ~ 6984399 (-)
G766965 LOC106578116 non-coding upstream 14815 6984672 ~ 6985349 (-)
G766966 NA non-coding upstream 15525 6985382 ~ 6985642 (-)
G766850 LOC106578109 other downstream 349730 6612079 ~ 6613412 (-)
G766749 NA other downstream 498511 6457203 ~ 6464631 (-)
G766665 NA other downstream 597614 6340621 ~ 6365895 (-)
G766640 NA other downstream 706514 6251597 ~ 6262155 (-)
G767056 ovol1 other upstream 275787 7245644 ~ 7251075 (-)
LOC110510419 LOC106560462 other upstream 1142731 8112588 ~ 8155916 (-)
G768390 NA other upstream 1219586 8189443 ~ 8191898 (-)
LOC118936684 LOC106578100 other upstream 1251674 8221531 ~ 8253809 (-)
LOC110531377 LOC106578102 other upstream 1308960 8277882 ~ 8283359 (-)

Expression


Co-expression Network