LOC110531367 (LOC106578116)


Basic Information

Item Value
gene id LOC110531367
gene name LOC106578116
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 6970858 ~ 7054255 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989240.1
CGGCGCTGTTGTGCCTTTCCGAGTTTGCTACCCGCTAGAACCAAGGATTTTTCTCAAATTCCTTGACTAGAACACGGAAGTAGATTTGAAGACGACACTTCTTGTGTGGGGTCAAGACATACTGACTGAGCTGAATAAGTTACTCAACTGAAAATGTCTAAACTACAGATGTTGCGTGTGTTTTTAAATGATCGTTTAACGGCGGCTGCTGTGGAGATTTTCGGGGCAGTTGAGAAAACGGTAGTGGAGTACCAGGAGGAGAATGATCGGCTACGGAGACTGCTGGGGATCACTCCAGAGATACAACTATGTAGAAGAGactccctgcagctctctgtctctgaagaGGAGGTTCCCCCTGAGCAGCAGCACTGTGAGCAGGAGGGGAGCCCCAGTCTGGGGCAGAAGGACCCAGAGACCAAacagattaaagaggaacaggaggaagtcAGGACCTgtcaggaggaagagcagcttcaaGGGCTCTTTGATACCAAAGACTCCATATTCACTCCTTCCTGTGTGAAAAGTGAATGTGATCTGGAGAACCCATGTCAAGAAGCCGTACTAGCTGAACACCCAACTCTCAGTCCACTGAAAACGTCTAAACTACAGTTGTTGAGTGTGTTGTTAAATCAATGTTTAACGGCATCTGCTGCTGTGGATATTTTTGGTGCAGTTGAGAAAACGGTAGTGGAGTACCAGGAGGAGAATGATCTGCTACGGAGACTGCTGCGGAGGACACCAGAGATACAACTATGTAGAATagactccctgcagctctctgtctctgaagaGGAGTTTCCCCCTGAGCAGCAGCACTGTGAGCTGGAGTGGAGCCCCAGTCTGGGCCAGAAGGACCCAGAGACCAAacagattaaagaggaacaggaggaagtcaggaccagtcaggaggaagagcagcttcaaGTGCTCTTTGATACCAAAGACTCCATATTCACTCCTTCCTGTGTGAAAAGTGAATGTGATCTGGAGAACCCATGTCAGGAAGCCGTACTAGCTGAACACCCAACTCTCAGTCCACTGAAAACGTCTAAACTACAGTTGTTGAGTGTGTTGTTAAATCAATGTTTAACGGCATCTGCTGCTGTGGATATTTTTGGTGCAGTTGAGAAAACGGTAGTGGAGTACCAGGAGGAGAATGATCTGCTACGGAGACTGCTGGGGAGGACACCAGAGATACAACTATGTAGAATAGactccctgcagctctctgtctctgaagaGGAGGTTCCCCCTGAGCAGCAGCACTGTGAGCAGGAGTGGAGCCCCAGTCTGGGACAGAAGGACCCAGAGACCAAacagattaaagaggaacaggaggaagtcaggaccagtcaggaggaagagcagcttcaaGGGCTCGTTGATACCAAAGACTCCATATTCACTCCTTCCCGTGTGAAAAGTGAATGTGATCTGGAGAACCCATGTCAAGAAGCCGTACTAGCTGAACACCCAACTCTCAGTCCACTGAAAATGTCTAAACTAcagttgttctgtgtgtttttaAATGAATGTTTAACGGCATCTGCTGCTGTTGAGATTTTCGGGGCAGTTGAGAAAACGGTAGTGGAGTACCAGGAGGAGAATGATCTGCTACGGAGACTGCTGCAGAGGACACCAGAGATACAACTACGTAGAATAGACTCcctgcagctctctgtctctgaagaGGAGGTTCCCCCTGAGCAGCAGCACTGTGAGCAGGAGTGGAGCCCCAGTCTGGGACAGGAGGACCCAGAGACCAAacagattaaagaggaacaggaggaagtcaggaccagtcaggaggaagagcagcttcaaGGGCTCTTTGATACCAAAGACTCCATATTCACTCCTTCCTGTGTGAAAAGTGAATGTGATCAGGAGGACCCACTTCAGTCCTTGACTCTTCCCCAAACCCAGActgtggagaacagagagagtgactCTAAACCAGTGGATCTCACACCCTTTGGAACTGTGACCCACATTAAGGGTCTCAACATTCCCTGTGACCCTCCAGATAATCAAAACAATGCCTCCAGACACAGCTCAGCCGTAAGCAGCTACACAGTAGGACTTGACTACAGTCCACCATTGGTTCCCAGCCCACCATTGGATCCCAGCCCACCATTGGATCCCAGTCCACCATTAGATCCCAGTCCACCATTGGTTCCCAGCCCACCATTGGTTCCCAGTCCACCATTAGATCCCAGCCCACCATTAGATCCCAGTCCACCAGTGGATCCCAGTCCACCATTGGATCCCAGTCCACCATTGAAGAAACACTGTTCCAAACCCAGCACCACATCTAGAAAAACTCACCACTGCCGTGACTGTGGTGCAACGTTTCCTCTGAAAGCTGACCTGCAGAGACATGTGACTCTCACCAGGAAGACACCCAGTGACTGCAGCTTTGGCAATAAACTCAACAACTCCACCTGTAAACTGAAGGCCCATGTCCGACTCTGTCACGGTGGTAAACCCTGTATCTGTCCAGTTTGTGGAAAGACCTTCAAACACAAAGGAATTCTGTCCAGGCACATGaggattcacacaggagagaaaccatttagctgtggtgactgtgggagAAGCTTCAGTCAGAAGGTGAGACTAACTGAACATAAActcactcacacaggagagaaaccatttagctgtggaGACTGCGGGAAAAAATTAAATCGGAAGGGGCACCTAAACATGCACAAActgattcacacaggagagaaaccatttagctgtggtgaTTGTGGGAAAGGCTTCAATCGGATGGCAGACCTAAGGAGGCACAAACTGACTCAcgcaggagagaaaccatttagctgtggtgactgtgaGAAAAGCTTCAATTTCAAGAATAATCTAACCAGGCATAAACTGACTcacacagACTCcctgcagctctctgtctctgaagaGGAGGTTCCCTCTGAGCAGCAGCATTGTGAGCAGGAGTGGAGCCCCAGTCTCGGGCAGGAGGACCCAGCCACCAcacagattaaagaggaacaggaggaactcaGGACCAGTCAGGAGGAAGAGCAGATTTAA
>TU873196
CTTAACTGCGGCTGCTGTAGAGATTTTCGGTGCAGTTGAGAAAACGGTAGTGGAGTACCAGGAGGAGAATGATCGGCTACGGAGACTGCTGGGGATCACACCGGAGATACAACTATGTAGAACAGactccctgcagctctctgtctctgaagaGGAGGTTCCCCCTGAGCAGCAGCACTGTGAGCAGGAGTGGAGCCCCAGTCTGGGACAGAAGGACCCAGAGACCAAacagattaaagaggaacaggaggaagtcaggaccagtcaggaggaagagcagcttcaaGGGCTCGTTGATACCAAAGACTCCATATTCACTCCTTCCCGTGTGAAAAGTGAATGTGATCTGGAGAACCCATGTCAAGAAGCCGTACTAGCTGAACACCCAACT

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989240.1 False 3066 mRNA 0.49 6 6970858 7054255
TU873196 True 391 lncRNA 0.52 2 7004202 7008293

Neighbor

gene id symbol gene type direction distance location
LOC110531380 LOC106578126 coding downstream 1001 6963142 ~ 6969857 (-)
LOC118966154 NA coding downstream 13078 6954992 ~ 6957780 (-)
LOC110531364 LOC106578119 coding downstream 63724 6885995 ~ 6907134 (-)
LOC110531366 LOC106578102 coding downstream 87946 6851197 ~ 6882912 (-)
LOC110510780 plcb3 coding downstream 135954 6636026 ~ 6834904 (-)
LOC110531378 LOC106578114 coding upstream 580 7054835 ~ 7065193 (-)
LOC110531373 LOC106578114 coding upstream 14272 7068527 ~ 7071119 (-)
LOC118966172 NA coding upstream 17702 7071957 ~ 7074751 (-)
tmem179ba t179b coding upstream 306654 7360909 ~ 7379032 (-)
prox3 LOC106578142 coding upstream 329094 7383349 ~ 7390543 (-)
G766944 NA non-coding downstream 38188 6931604 ~ 6932670 (-)
G766915 NA non-coding downstream 115233 6854776 ~ 6855625 (-)
G766903 NA non-coding downstream 150461 6817979 ~ 6820397 (-)
G766904 NA non-coding downstream 150969 6818396 ~ 6819889 (-)
G766899 NA non-coding downstream 167908 6794779 ~ 6802950 (-)
G766996 NA non-coding upstream 27672 7081927 ~ 7082698 (-)
G767002 NA non-coding upstream 52821 7107076 ~ 7107275 (-)
G767003 NA non-coding upstream 55108 7109363 ~ 7109608 (-)
G767010 NA non-coding upstream 72496 7126751 ~ 7126980 (-)
G767012 LOC105030512 non-coding upstream 75073 7129328 ~ 7129866 (-)
G766850 LOC106578109 other downstream 357446 6612079 ~ 6613412 (-)
G766749 NA other downstream 506227 6457203 ~ 6464631 (-)
G766665 NA other downstream 605330 6340621 ~ 6365895 (-)
G767056 ovol1 other upstream 191389 7245644 ~ 7251075 (-)
LOC110510419 LOC106560462 other upstream 1058333 8112588 ~ 8155916 (-)
G768390 NA other upstream 1135188 8189443 ~ 8191898 (-)
LOC118936684 LOC106578100 other upstream 1167276 8221531 ~ 8253809 (-)
LOC110531377 LOC106578102 other upstream 1224562 8277882 ~ 8283359 (-)
G766820 LOC106578118 non-coding downstream 2437 7000344 ~ 7001765 (-)
G766970 NA non-coding downstream 5577 6998069 ~ 6998625 (-)
G766967 LOC106578121 non-coding downstream 15717 6986110 ~ 6988485 (-)
G766966 NA non-coding downstream 18560 6985382 ~ 6985642 (-)
G766965 LOC106578116 non-coding downstream 18853 6984672 ~ 6985349 (-)

Expression


Co-expression Network