XLOC_026589 (gng13b)


Basic Information

Item Value
gene id XLOC_026589
gene name gng13b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 35589212 ~ 35602233 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051799
CTCTACATTGGCCCAGCAGGGATTGAACAGCGTCCTTGCACTTTACTAGGCTGTAACCACTGCCATCAGCTCAACTTCTATAGCATCGTTTCAGCTGTCCGTGCCGCCGCCGCCGCTGCCGGAGATTATCTTCTTTCCGTCTGCCTGACCAGTCCTTCGGCTGTTTGCAGCGGATTCACAATCGCCTATCGTCTTGTTTTTTCGTCACTTAGACACAGACGTATGCTTGTTTTTTGATTAATCTAAGGACATTTCCAAATAGATAAGAGCAGTCTGCGCCAAACAGGGGATTACTCAAAGATACATCACCGAGGTCTAGTCTGATCACTTCCACAACAAGCCGCAGTCATGGACGAGATGGACTTGCCCCAGATGAAGAAGGAGGTAGAAAGCCTGAAGTACCAACTGGCCTTCAAAAGGGAGAAATCCTCAAAGACAGTGACAGACCTGGTGAAGTGGATCGAGGAGTGTGTGCCCGAGGACCCTTTTCTGAATCCCGAGCTGATGAAGAACAACCCCTGGGTGGAGAAGGGCAAGTGTGTGcttctataaaacaaaacaaagagcgtagcagcagcaacagcagcagcagcagcggtcGCCCAAGCCCTCCGTCTGAGCCTCCACCAGCCTGACAGGATCACACGGCGCTTGCTCTCTTCTTTCATTCCCTCACCATGAATGTACAGCAGTTTAGCATCCACtgcacaataaacacacacaacattAGCTCTATATAGTCCCAATTTGACACTTTGACATGCATTACTATTATATTTATAACCATCGACTATATCTTTATATGCGGTTAGTGGAATTTCTCTTCGACTTTAGCGTCCTCGTTGCTACTTGCATGCTTGATCTTGAGTTCAAGCATGTAGTGTCGACATCGAAATGCTCGAAAAGGCCTGTCAGACCACAAACTGCATGACAGAGGCATCCGAAAGGCCAAGTTTCCCCCTCTGTTATGCAGCATGTTCTTTCCTCCTGCAGACCTGCGCACTATTTACACCACACTCTCACTTACAGAGCGTTTTTAAACATGTACAGTtcgttttaatttattaacttatttatgatcggtaatttatttatttatggtttgattCACCACTGAAGCTGTCGGCGCCGACTGCTTTAGACGCTACAATGGACCTGCTGTTGTTCGGCTGCACCCTTCCTTCCTCGAAAGCTAAAggatttaacaacaacaaacaaacaacaacgcATCTTGCCAGGTCACCATCGAATACTGCCTTGTACACAATTTCCTTAAAAAGAATGTATGTGTGTTGCGAGGGACTAGTAAACCATCAGCACCCTTAAGAATCGAAAGGATATGCAAATGGAGAGGTTGTGCACTGGCCaaggctttttttctttttcttttctcttcttaGATTAATAGCTCGATCTGCACTTGCGGCAAGGATGTGGGGTTAATTTATGACTTTtgatttgttcatgtttttatatattcaaaCCTGGTAGAAACCTGTCTAATTATCTAGAGGTGTGTTACATATGAGAatgctttgagaaaaaaaaaaaaatatgcataagATCAAGTACTAGTTTAATAACGAGCAATaagtgattacatttttttattgaatgttttacAAAACATCTTATTGAATAAAGTAGAGGATTTTTAGACAGC

Function

symbol description
gng13b Predicted to enable G-protein beta-subunit binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within phospholipase C-activating G protein-coupled receptor signaling pathway and sensory perception of taste. Predicted to be located in plasma membrane. Predicted to be part of heterotrimeric G-protein complex. Is expressed in lateral line ganglion; olfactory bulb; olfactory placode; retina; and retinal ganglion cell layer. Orthologous to human GNG13 (G protein subunit gamma 13).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007200 phospholipase C-activating G protein-coupled receptor signaling pathway biological_process
GO:0050909 sensory perception of taste biological_process
GO:0007165 signal transduction biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-97 Predicted to enable G-protein beta-subunit binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within phospholipase C-activating G protein-coupled receptor signaling pathway and sensory perception of taste. Predicted to be located in plasma membrane. Predicted to be part of heterotrimeric G-protein complex. Is expressed in lateral line ganglion; olfactory bulb; olfactory placode; retina; and retinal ganglion cell layer. Orthologous to human GNG13 (G protein subunit gamma 13).

Ensembl:

ensembl_id ENSDARG00000037921

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051799 True 1663 mRNA 0.43 3 35589212 35602233

Neighbor

gene id symbol gene type direction distance location
XLOC_026588 NA coding downstream 14761 35565128 ~ 35574451 (-)
XLOC_026587 dctn5 coding downstream 34403 35550870 ~ 35554809 (-)
XLOC_026586 ndufab1b coding downstream 47831 35535121 ~ 35541381 (-)
XLOC_026585 NA coding downstream 641151 34947402 ~ 34948061 (-)
XLOC_026584 psmd11a coding downstream 772233 34801146 ~ 34816979 (-)
XLOC_026590 caskin1 coding upstream 30540 35632773 ~ 35801146 (-)
XLOC_026591 suz12a coding upstream 247159 35849392 ~ 35865040 (-)
XLOC_026592 rab11fip4a coding upstream 421035 36023268 ~ 36115354 (-)
XLOC_026593 coil coding upstream 517549 36119782 ~ 36127234 (-)
XLOC_026594 engase coding upstream 534297 36136530 ~ 36153591 (-)
XLOC_026580 NA non-coding downstream 947239 34641048 ~ 34641973 (-)
XLOC_026572 NA non-coding downstream 1448031 34139637 ~ 34141181 (-)
XLOC_026558 BX649502.11 non-coding downstream 1502729 34086041 ~ 34086483 (-)
XLOC_026600 NA non-coding upstream 718006 36320239 ~ 36323625 (-)
XLOC_026606 NA non-coding upstream 980867 36583100 ~ 36587136 (-)
XLOC_026612 FO744883.1 non-coding upstream 1153800 36756033 ~ 36756149 (-)
XLOC_026617 NA non-coding upstream 1351392 36953625 ~ 36954088 (-)
XLOC_026618 CT573704.1 non-coding upstream 1365638 36967871 ~ 36967993 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G199002 NA non-coding CI01000046 null 6197391 ~ 6197723 (-)
bowfin (Amia calva) AMCG00018485 NA coding CM030135.1 CM030135.1 12271996 ~ 12273462 (-)