LOC110531373 (LOC106578114)


Basic Information

Item Value
gene id LOC110531373
gene name LOC106578114
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 7068527 ~ 7071119 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614564.2
ACGCTGTTCTGTGTTTCTGGGTTCGTCGCCACTAGAACCAATGAGTTTTGTAAGATTCATTGACTTGAACACGGAAGTAGGATTGGGAATGAGTTTGTTTTGATTTGgaacattattttttttgtggAGTAAAAGAAAGACCACTGAATTTAGGACGTGTCGGGGGCTCGTTGATACCAAAGACTCCATATTCACTCCTTGCTGTGTGAAAAGTGAATGTGATCAGGAGGACCCATGCCAAGAAACCATACTATCTAAATAACCAAATACTGAATCCACTGAAAATGTCTAAACTACAGTCGTTGCGTGTGTTTTTAAATGATCGTTTAACGGCGGCTGCTGTGGAGATTTTCGGTGCAGTTGAGAAAACGGTAGTGGAGTACCAGGAGGAGAATGATCGGCTACGGAGACTGCTGCGGAGGACACCAGAGATACAACTATGTAGAATAGACTCcctgcagctctctgtctctgaagaGGAGGTTCCCCCTGAGCAGCAGCACTGTGAGCAGGAGTGGAGCCCCAGTCTGGGACAGAAGGACCCAGAGACCAAacagattaaagaggaacaggaggaagtcaggaccagtcaggaggaagagcagcttcaaGTGGTAGAGCCTGATATCATAGAGTTCATATTCTCTCCTTCCTGTTTGAAAAGTGAATGTGATCAGGAGGACCCACTTCAGTCCTTGACTCATCCCCAAACCCAGActgtggagaacagagagagagactctaaaCCAGTGAATCTCACACCTTTTGTCACTGTGACCCACATTAAGGGTCTCAACATTCCCTGTGACCCTCCAGATAATCAAAACAATGCCTCCAGACGCAGTTCAGCTGTAGGCAGCTACACAGTAGGACTTGACAGTAGCCCACCATTGGATCCCAGTCCACCATTGGATCCCAACCCACCAATGGGGGAACACTGTTCCAAACCCAGCACCACGCCTAGAAAAACTAGCCACTTTCGTGACTGTGGTGAAACGTTTGCTCCGAAAGCTGACCTGCAGAGGCATATGACTCTCACCAAGAAGAGACTCAGTGAATGCAGCTTCggcaataaacactacaactccACCTGTAAACTGAAGGCCCATGTCCAACTCTGTCACAGTGGAAAACCCTGTATCTGTCCAGTTTGTGGAAAGATCATCAAATACAAAGGAGATCTGTCCAGGCACATGagtattcacacaggagagaaaccatttggctgtggtgactgtgggaaaagcttcagtCAGAAGGGAAACCTGAACTTGCACAAACTGACTCACACgggagagaaaccatttagctgtggtgactgtgggaaaagcttctATCAGAAGGGAGACCTAAGGAAACATATACTGACTCACACACAAcagaaaccatttagctgtggtgTCTGTGGGAAAAGCTTCTATCAGAAGGGGAACCTTACAGATCATATAaggactcacacaggagagaaaccatttagctgtggtgactgtgggaaaagcttcaatTTGAAGGGGAACCTAAGGAAGCATAaactgactcacacaggagagaaaccatttagctgtggaGACTGTGAGAAAAGCTTCACTCAAAAGTCTAACCTGCTGACGCATGTGAAAAACATCCACAAAGGAGGAAAACAGGATGAAAATTAGGACAAAGATCTTCTGTCGGAAGACGGGAATTAAAAGGCAGGATGTGGACAACAAAAGCAAAGCAACTCTGGATCATTCATGATGTAGGATTCAGATAAATACATGTGTGGTGAACGTACTTTTGTAAAGCTTTCTatgtaaataaagtttgatttgatttcaattaTGATGTAATAATCCAACAGTTCAGGGTTTACTATTTGCAAGTGAGGTGGTCCTCCCCTAATCTTTTGCATCGGCCTGATGGTTAAATCAGCAAATATTGTGAACATGTGGTCATTTAAAATGTGTAAACAATTATCTTTGTTTTTGTGGATAAATTTACTCCTGACAGATATCTTTTATGAAGTTTTGCATTTTAGAATGTCTCTAAATGTACCGAGAGAATGGTCTGACTTGATGTTTTCGATATATTAAAACATGTTTACTTTACA

Function

NR:

description
oocyte zinc finger protein XlCOF7.1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614564.2 True 2089 mRNA 0.44 2 7068527 7071119

Neighbor

gene id symbol gene type direction distance location
LOC110531378 LOC106578114 coding downstream 3334 7054835 ~ 7065193 (-)
LOC110531367 LOC106578116 coding downstream 14272 6970858 ~ 7054255 (-)
LOC110531380 LOC106578126 coding downstream 98670 6963142 ~ 6969857 (-)
LOC118966154 NA coding downstream 110747 6954992 ~ 6957780 (-)
LOC110531364 LOC106578119 coding downstream 161393 6885995 ~ 6907134 (-)
LOC118966172 NA coding upstream 838 7071957 ~ 7074751 (-)
tmem179ba t179b coding upstream 289790 7360909 ~ 7379032 (-)
prox3 LOC106578142 coding upstream 312230 7383349 ~ 7390543 (-)
snx15 snx15 coding upstream 336174 7407293 ~ 7426803 (-)
LOC110515519 LOC106578133 coding upstream 734382 7805501 ~ 7873725 (-)
G766820 LOC106578118 non-coding downstream 66762 7000344 ~ 7001765 (-)
G766970 NA non-coding downstream 69902 6998069 ~ 6998625 (-)
G766967 LOC106578121 non-coding downstream 80042 6986110 ~ 6988485 (-)
G766966 NA non-coding downstream 82885 6985382 ~ 6985642 (-)
G766996 NA non-coding upstream 10808 7081927 ~ 7082698 (-)
G767002 NA non-coding upstream 35957 7107076 ~ 7107275 (-)
G767003 NA non-coding upstream 38244 7109363 ~ 7109608 (-)
G767010 NA non-coding upstream 55632 7126751 ~ 7126980 (-)
G767012 LOC105030512 non-coding upstream 58209 7129328 ~ 7129866 (-)
LOC110531366 LOC106578102 other downstream 186409 6851197 ~ 6882912 (-)
G766850 LOC106578109 other downstream 455115 6612079 ~ 6613412 (-)
G766749 NA other downstream 603896 6457203 ~ 6464631 (-)
G766665 NA other downstream 702999 6340621 ~ 6365895 (-)
G767056 ovol1 other upstream 174525 7245644 ~ 7251075 (-)
LOC110510419 LOC106560462 other upstream 1041469 8112588 ~ 8155916 (-)
G768390 NA other upstream 1118324 8189443 ~ 8191898 (-)
LOC118936684 LOC106578100 other upstream 1150412 8221531 ~ 8253809 (-)
LOC110531377 LOC106578102 other upstream 1207698 8277882 ~ 8283359 (-)

Expression


Co-expression Network