snx15 (snx15)


Basic Information

Item Value
gene id snx15
gene name snx15
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 7407293 ~ 7426803 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987218.1
aagtcagaattATTGCTAAAtcccgcctatttctacaatcagatttttaaacctaaccataatcacactgctaaccctGTGCCTAATTATAACCATACATTAAgaccaaaaagtacatttttgtttttattcatttttacgATATACCCATTTTGACTTTGTGCGTGTGGTAATTAGTGACAACCACAAGTGTATACATCTGTACTTCCACACGGCGATGTCtcggaagaaagagaaagaagattATTACCGTTTTTTCTCGGTGACAGAACCACGCACCCACGAGAAGGGACACACGGAATATAAAGTCACCGCAAGGtTTGTCTCCAAGCGTCGTCCAGAGGACGTCAAAGAGGTGATAGTATGGAGGAGGTACAGTGAACTGAAGAAGCTATATGGAGAGCTGTCCTACACACACAGAAACCTGTTCAGGAGACAGGAGGAGTTCCCTCCGTTCCCTGGCGCTCAGCTCTTTGgtaggTTTGATGAAGGGGTGatcgaggagaggaggagtgcagCTGAGGTCATGCTACTATTCACCACCAATATCCCTGCTCTCTACAACAGCCCTCAGCTTAAGGACTTCTTTAGGgGTGGTGAGGTGATCAGGCCGTtagacccctctcctctctcctcctccacccccctccctcccccactcatCCCCCTGCCACAGCGTCGAGGCTCAGACTGTGAACCTGCGGCGGAGGAGGAGGGGACCGAGGCCCCTATCCAACCCCAGAAGCTGGGTCTTTCACTGGGCACGGATCTAGTCGAGCCTGAGGTTGCAGCTGAGGCCTACAGTGAGATGGGGGGTTGTCCTACTCCAGTAACACCTAcagctgaggaggaggaggaagagttaaCGGACCTTCCTGATGTACCCGGCGATCTGAAGCTAGACGACAGAGTTCTCAATCCGTTCCGGCCCTGCGTCCTCAGAACAGACCAATCACAGTCTCAGGAGGAGTTTGATTCGCTGTTCGATTCTGTGATGCGGGAGGAGCCTTCAGAGGAAGTaccgccccctcctctctccgaCAACGACCTCGCCATCTTCGACCCCTGTGCTAAAGAAGACCAACCGAGCGCATCACACAACCAATCAGAACTTCTGTCGCTGCCCTTGACCAATCCGGACGGTGGGGAGGCGGGCTATCTGAAGCAGGCAGCCAATGAGCTCACAGCTGCGATGGAAAGCGAGAAGGAGGGAGAGTACAGTACAGCCATACAAAAATACAAGACAGCTGTGGATTTACTCATCACTGGAGTTAAAGgagaTCCAGACCCACAACGTAGAGGTTCAGTAAAGAGAAGAACTGCTCAGTATCTGGAACATGCAGAGACACTACTCACACGACTTACCTCCACACACACCTCGCAGGACCAGGatgcttaaacacacacacacacacacactgcggagaagtactcataaacacacacatgaacaggACGCTGAAACACACACTCCTTAATACACTCAGGATCAATAGAACAACTGGAGTTTTGAACAACCAATAGcaccacttacacacacacacacacacctctctccctccctccctctctcttaaaaccacaggaggttggtggcctcttaattggggaggacgggctcgtggtaatggctggagcggaatacatggaatggtgtcaaatacaTCAAACGTTCAGTTTCCAGGTGTTTCGTTCcctctgttccagacattattaatGTGTCGCCCTCCACTCAACAGCCTCCTGTtgcttaaaacacacacacacacacgcacacacacaaacacacacacacacacacacacaaacacacacacacgcacacacaaacacacacacacgcacacacacaaacacacacacacacacgcacacacaaagaaTCACATCCCTGTTGCTTCTAGAATCACATCCCTGTTGCTTCTAGAATCACATCCCTGTTGCTTCTAGAATCACATCCCTGTTGCTTCTAGAATCACATCCCTGTTGCTTCTAGAATCACATCCCTGTTGCTTCTAGAATCACATCCCTGTTGCTTCTAGAATCTGAAATCAACTGTCAAATAATTGAATCTGATTCCCCTTAATGAACAAGACAATGGCTTGCgttccaaaaggcaccctattccctatatagtgcacggcTTTTTACCAGGGCCAATAGGTGAACACTAGGGttctagggctctggtctaaagtagtgcactaaatagggaatagggctctggtctatataaGGAATATGGTTCCTTTGTCCTCTTAATTTATCTTCCTAGATTCTTTTACAATGTTTTAAGGTGTTAATAGTATTGTGTGTTTTTGTACACTACACGCATTACTTCATTGTTTTcttaaataaatcaataaaaacaga

Function

symbol description
snx15 Predicted to enable phosphatidylinositol binding activity. Predicted to be active in early endosome. Is expressed in several structures, including alar plate midbrain region; immature eye; myotome; nervous system; and pharyngeal arch 3-7 skeleton. Orthologous to human SNX15 (sorting nexin 15).

NR:

description
PREDICTED: sorting nexin-15

GO: NA

KEGG:

id description
K17927 SNX15; sorting nexin-15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987218.1 True 2373 mRNA 0.48 7 7407293 7426803

Neighbor

gene id symbol gene type direction distance location
prox3 LOC106578142 coding downstream 16750 7383349 ~ 7390543 (-)
tmem179ba t179b coding downstream 28261 7360909 ~ 7379032 (-)
LOC118966172 NA coding downstream 332542 7071957 ~ 7074751 (-)
LOC110531373 LOC106578114 coding downstream 336174 7068527 ~ 7071119 (-)
LOC110531378 LOC106578114 coding downstream 342100 7054835 ~ 7065193 (-)
LOC110515519 LOC106578133 coding upstream 378698 7805501 ~ 7873725 (-)
LOC118965986 NA coding upstream 633781 8060584 ~ 8061856 (-)
LOC118965984 NA coding upstream 635423 8062226 ~ 8064024 (-)
LOC118965983 NA coding upstream 639497 8066300 ~ 8067723 (-)
LOC118965985 NA coding upstream 641024 8067827 ~ 8069224 (-)
G767420 NA non-coding downstream 24218 7381555 ~ 7383075 (-)
G767468 NA non-coding downstream 64146 7342931 ~ 7343147 (-)
G767463 NA non-coding downstream 68163 7338755 ~ 7339130 (-)
G767460 NA non-coding downstream 69504 7336750 ~ 7337789 (-)
G767483 NA non-coding upstream 3399 7430202 ~ 7434586 (-)
G767516 NA non-coding upstream 88432 7515235 ~ 7517790 (-)
G767547 NA non-coding upstream 159225 7586028 ~ 7586425 (-)
G767562 NA non-coding upstream 182387 7609190 ~ 7610816 (-)
G767600 NA non-coding upstream 276847 7703650 ~ 7704135 (-)
G767056 ovol1 other downstream 156218 7245644 ~ 7251075 (-)
LOC110531380 LOC106578126 other downstream 437602 6963142 ~ 6969857 (-)
LOC110531366 LOC106578102 other downstream 525175 6851197 ~ 6882912 (-)
G766850 LOC106578109 other downstream 793881 6612079 ~ 6613412 (-)
G766749 NA other downstream 942662 6457203 ~ 6464631 (-)
LOC110510419 LOC106560462 other upstream 685785 8112588 ~ 8155916 (-)
G768390 NA other upstream 762640 8189443 ~ 8191898 (-)
LOC118936684 LOC106578100 other upstream 794728 8221531 ~ 8253809 (-)
LOC110531377 LOC106578102 other upstream 852014 8277882 ~ 8283359 (-)
G768780 NA other upstream 1555665 8982468 ~ 8990706 (-)

Expression


Co-expression Network