XLOC_002659 (cldn23b)


Basic Information

Item Value
gene id XLOC_002659
gene name cldn23b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 15050469 ~ 15053614 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004940
CAAACGCAGACAGTCACGTGACCTTCAACAATAGCCAGATTAGATGGGATCCTCCCACATGAAGTTTCAGGTTCCCTGCTACTCCTAAAACAAGCCTGAATCAAACTCATTCATTCCCCCTTTTTTCCCCACTCCCCAAATCGATTATGAGAACACCTGGGATTTTTATTTTCGGCATGGTGCTAGGACCTTGCGGCTGGATCTTGGAGCTCGTTTGCACGGTGGCACCAGCCTGGCGCACGATCAACAACATCAGCGGGGAGTCAATCGATCTGGTCCTCCAACAAGGATTATGGGACATCTGCAAGACTTACTCGTCGTCCCAGAACATCCTCTGCGGGCAGGTCGACACGCAGTACTTCAGCGCGCAGATCATCACCATCGCGCGGGGCTTGATGCTGTCGTCGCTAATCCTCAACCTTATTGGCATCGGTGTGGCATCTGCTGGAGTGCGGTGCTGGACTGAATACCCGCAGTGGACAGTGGCTGGGGTCGGGGGTGTCCTAATCTTCATCTCCGGGGTGCTCACCATCATCCCGGTGTCGTGGTACACCAACATCATGACCACCATCCCCGCCGCATCCACGGAAGTCCGCGTCGGGTACTGCCTGGTGCTAGGCTTCATCGGGGGCATCTTGGAGGTGCTCGGGGGTTTGGTGATGTCTATCGGCTTGTGTCAGAGATGTGGCAGAAGTAAGCCAGCTGATAGGACGAGGATAAACGTGGTCAGGTCCGCGCACAACCCAATGCCGCCGCCGGCGCGCAGAGACACGGTGCCCAGTGTGAGCAGTTTCAGCAGTGCCAGCAGCGCGCCCTATTACTCCAAACACACCGAAACAGACTTCTACAGAGCCAGAAAACCGGACAGCAGACCAGTGAACGCTTACCAAACACGACCTTACGATTCAGATCTATAGATTAAAATCATAACTTTGAGGCATGCAGCCTTATAACAACCGTCATTACATCTGAACAAATTTCAGTTTGGATATATTCTTATGGATGCCCGTTTATATTTGGAAATACAGACAATTTTATTTAACATGACAACTTTTCATAATTGTGAAATTATGTACCTGTTAATTAGCCTaatagtttctgtattttgtgttttctgcttatttgcggttgtgaattgcattataggccTACtagatgttgatctctgctttgtcgactTATGTTAAAAATGCTACTCTACAATTCAACATagacacttttattgacattttagtagttttaaataatgtaatgtgtaataaataaatttatttagaaacaaaagtttgttaaaaaaaaaaacagaaatgtacaCTGAAACAAGGATTCAAAGATGGTTCTTTGGATGtacttaagttaagtggttgtaaacaatttatttgggctgaatttaaacaagaaaaatgtGGAACACCAACCAAATTTAACTtgtgtgtttaaattcaacccataaaaatagtttgcaacaattttgtagAAATAATTTTTCAGTGTACCGTtttttacaaggtttttgtaccataatatacaacaacaCAGAcagtatatcactttaaactattaaaaatgtttagaaaagtCTTACAGAAgtcataaaagaagaaaaaatcctACTCTTCAGGGTTAAAGCTGTtgaaaggtcccataatgcaattcaaaagcatgaataatcaggaaaaaatttaaaaacatggatcacaaaatatggaaaactgctaatttacgaatattttttacactgtagatGAAGTgccttgcatttatatttattataaagccTAACATCTGGGTTTCAAAAGCAATGTCTTGTTCATTTTATTCATCAGGATATAGATTTTTAATAGGCCTATCTGTTCAACGCATAAAGACAGTTTTGAACTCTAGTGTTGTTGTCTGGAATTGTGGCAATAAgttcaacttatttttaaatcaattacgTTTAAAGCAGTAATTATtcagaaaaatatataacagAGAATTTGACCAATTTTGGGGAACAAAGAGCAGATAAAAACTGATTAGCTCCATATACTTGAAGCACAGTCAGGCCAATTAGATGTACTCAGTCTCTTTACACGTTCAAaacactctatctatctatctatctatctatctatctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtccgtccgtccgtccgtccgtccgtccgtccgtccgtcagtgtatatatatatatatatatatatatatatatagaactaACTTTAAAACAAAATGCTCCCTTTGTAACTGGTTGGTTTGGTTCATGGCTTAAAACGTTTTAGTAAAGACCTCTGTTGGTAAAATCTTTTAGGCTACATGATAAGTCATAAATTTGGCATGTGTATCAATGCTTAAGTTCTTACAAGTTAAACTTAAAATTAAGAAAAGTAAAATTAGAAAAAAGTTTCCTGAAGTTAAATAGCCGTTTATTAGCTACTTTTATAGCCATGTGCTTCTTGTTAAACTTCAGTCAGTTCATTTCATGTTAACCATTATGTTGGTGTATTTTATGTGCTCATGGTCTGAATGTTTGTTCCCTATTTACAGAAAGGACATtgattaactaattaactaacttcTTATGTTTTTCATGAACGTTGTTATTGTAAACTACTCAGTTATTGCAATTTGGCAGAAATGATGGTTGTCTGCATAAACTTTCTAGTCTAAGATTATTTCAAACAGCACTAACACCGTTATTTTGCTTTTATACTTTGCACTTTATATTGTAAAGCCCTCATGCTCTACCTTCAACGTGTTTTGTAGCACTAGTAGGCTAATGTGTGTAAATACATAGCTTATTAGGAACCTTTGCTGTTAAAATGCAAACATTCTTTTGAGGTTGTAAAACCACTTCACACATGAACAGATATGTGTGTTTGCAAAAATTGATGTCGTGACAAAACATGTAAATGAGGGTTCTTGTGCACAATAATGTTGTCATTGATTTCAACTCATTCATTTTAATAGAAATGACTGAAGGCTGTTTATTTACATGCATTATCATAATTGTGATGAATGAACAGTGTCTCAAAGCTAGCACATATGTTTACATGCATTAATATACTGAATGATGAAGTGATTAAATAAAAGGTCAGTTTATAT
>TCONS_00004941
CATTCATTCCCCCTTTTTTCCCCACTCCCCAAATCGATTATGAGAACACCTGGGATTTTTATTTTCGGCATGGTGCTAGGACCTTGCGGCTGGATCTTGGAGCTCGTTTGCACGGTGGCACCAGCCTGGCGCACGATCAACAACATCAGCGGGGAGTCAATCGATCTGGTCCTCCAACAAGGATTATGGGACATCTGCAAGACTTACTCGTCGTCCCAGAACATCCTCTGCGGGCAGGTCGACACGCAGTACTTCAGCGCGCAGATCATCACCATCGCGCGGGGCTTGATGCTGTCGTCGCTAATCCTCAACCTTATTGGCATCGGTGTGGCATCTGCTGGAGTGCGGTGCTGGACTGAATACCCGCAGTGGACAGTGGCTGGGGTCGGGGGTGTCCTAATCTTCATCTCCGGGGTGCTCACCATCATCCCGGTGTCGTGGTACACCAACATCATGACCACCATCCCCGCCGCATCCACGGAAGTCCGCGTCGGGTACTGCCTGGTGCTAGGCTTCATCGGGGGCATCTTGGAGGTGCTCGGGGGTTTGGTGATGTCTATCGGCTTGTGTCAGAGATGTGGCAGAAGTAAGCCAGCTGATAGGACGAGGATAAACGTGGTCAGGTCCGCGCACAACCCAATGCCGCCGCCGGCGCGCAGAGACACGGTGCCCAGTGTGAGCAGTTTCAGCAGTGCCAGCAGCGCGCCCTATTACTCCAAACACACCGAAACAGACTTCTACAGAGCCAGAAAACCGGACAGCAGACCAGTGAACGCTTACCAAACACGACCTTACGATTCAGATCTATAG

Function

GO:

id name namespace
GO:0070830 bicellular tight junction assembly biological_process
GO:0007155 cell adhesion biological_process
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-471 Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in brain and kidney.

Ensembl:

ensembl_id ENSDARG00000103703

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004940 False 3146 mRNA 0.38 1 15050469 15053614
TCONS_00004941 True 810 mRNA 0.56 1 15052698 15053507

Neighbor

gene id symbol gene type direction distance location
XLOC_002658 cldn23a coding downstream 1688 15046837 ~ 15048781 (-)
XLOC_002656 NA coding downstream 7721 15031006 ~ 15042748 (-)
XLOC_002657 NA coding downstream 15509 15032972 ~ 15034960 (-)
XLOC_002654 smad2 coding downstream 107188 14871136 ~ 14943281 (-)
XLOC_002655 si:dkey-88l16.2 coding downstream 110123 14936045 ~ 14940346 (-)
XLOC_002660 CT027832.1 coding upstream 28796 15082410 ~ 15086297 (-)
XLOC_002661 spp1 coding upstream 67097 15120711 ~ 15128771 (-)
XLOC_002662 pum3 coding upstream 267908 15321522 ~ 15340450 (-)
XLOC_002663 sgtb coding upstream 328358 15381972 ~ 15405564 (-)
XLOC_002664 smc5 coding upstream 564127 15617741 ~ 15644974 (-)
XLOC_002653 CT027820.1 non-coding downstream 318070 14732283 ~ 14732399 (-)
XLOC_002648 BX000705.1 non-coding downstream 1118773 13931569 ~ 13931696 (-)
XLOC_002647 BX293994.1 non-coding downstream 1438221 13612133 ~ 13612248 (-)
XLOC_002666 NA non-coding upstream 663125 15716739 ~ 15724104 (-)
XLOC_002673 NA non-coding upstream 1952611 17006225 ~ 17010898 (-)
XLOC_002674 NA non-coding upstream 1963185 17016799 ~ 17027111 (-)
XLOC_002676 NA non-coding upstream 2031910 17085524 ~ 17088911 (-)

Expression


Co-expression Network