LOC110510419 (LOC106560462)


Basic Information

Item Value
gene id LOC110510419
gene name LOC106560462
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 8112588 ~ 8155916 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987247.1
AGAGAAGACactgaagaaagagagagacggaggacgGGAAggcagaagagaggagggaatagTAAAGAATTCAGGAATagaccattttttttttgtcttacgTGACGTTAGGGTTTTCCGTAGATCAAGGAAAAGTCAACCGCTTTTACGTTGCAACAAcacgaggacagagagaggagagacggcaCGGAAGAGCTTGTCTTTTGTATTTTAAATAAGTGTAGACGCTACTGCTGATTTGTAGGCTGTCCTAAACCTTTGTACGCTGTATTCTAATACCGTAAATAACTCATTATagcctttaaaaaatatatatatatattttttaggtcaatttgatttgatggaaaCCACGAGGTGAACCTAATGCCGtgctctttttttttgttgcaataaGGGAACAATCTCAGTAATATACTTGAATTGAATCGCTTCTCCTTATGAGAATCACGGCTGTTTAGCGCGAACAATACCCGAAACAACGCGTCTGAAACTCGCTCTACCACCACAACTTTCAGGATTTCCTTCAGCCGACCGACCATGGCTGCGGTTACCAGCCCAGAGACGAGCCCTCAACCCCGGGTATATTTCCAGACGGTAGCCGCCGGTTCAACCGAAGAACCGGAGATACCTGTTCGGAAGCAAGGGCGAGTAACCGTCAAATATGACCGGAAAGAACTAAGAAAGAGACTAAACCTGGAAGAATGGATAATCGACCAGCTAACGGCTCTTTACAACTGTGAGGAGGAGGCTATACCAGAGTTGGAGATAGATGTGGATGAGCTGCTGGACATGCCTAGCGATGATGACAGAGGAGCCAGAGTTAAAGATCTCCTGGTAGACTGTTACAAACCAACTGAGGACTTTGTGTCTGGTCTGCTGGATAAAATACGTGGCATGCAGAAACTCACCACCCCCCAGAAGAAATAACCTCAACCCTGAGTCACCTCACCCCCTGCCTCCTcccgcctccctccctcactccaaccTCACCCCAAGAAACAGGAGCTTGGCTTCCTCAGAGATAGAGGAGTAAGATAGGTGATCGAAGCAGCCAATCAGATCCAAGCAGGGTGTATGATGTCATATCctgtgatttttatttttattttaatgctTTATTTAGtttacatttatttcaatattttaatttttgttgtattgttgttAAATAATCAAACGATCGGTCATATTTCTCATGTTAATGAGTGAATATAGCAAACTATAATGTAGTTGTAAACCAAGCCCAGGATATATTCTGAGTTTTAGTAGCCAAGCCCAGGATATATTCTGAGTTTTAGTAGCCAAGCCCAGGATATATTCTGAGTTTTAGTAGCCAAGCCCAGGATATATTCTGAGTTTTAGTAGCCAAGCCCAGGATATATTCTGAGTTTTAGTAGCCAAGCCCAGGATATATTCTGAGTTTTAGTAGCCAAGCCCAGGATATATTCTGAGTTTTAGTAGCCAAGGAGGTGAGgtagggggggagggagggaggggaggggagggggggagggaggggggcactGGGTAGTGGaaaatgtgtctgaatgtgttcatccaaatatccacacacacacacacacacacactcagggaaCAGCAGAAACACAGACCACAGCTGCTGTTCCTTCACACGCTCACACAGATGTGAACactggtacacacacaaacacacactggcgCTCTCTCATCAACACACACGGGAaagaggtggagggggggggggtataatcaTTGAGAGGGAGATaaatggagaaaaagagagagaatcagaggtcTTACTCTTCCTGGCTTGGCTGCCTCACAAGGCCTTATTGTTGCCAATCATGCAGCTCTCTCACTCACCCCATGTTTCTCTTTTGCCCCTCCTTCCTCTGACTCCTTCCTCTGACTCCTTCCTCTGACTCCTTCCTCTGACTCCTTCCTCTGactccttcctctgtctccttcctctgtctccttcatctgtctccttcctctgtctccttcctc
>TU874433
ccaaatatccacacacacacacacacacacactcagggaaCAGCAGAAACACAGACCACAGCTGCTGTTCCTTCACACGCTCACACAGATGTGAACactggtacacacacaaacacacactggcgCTCTCTCATCAACACACACGGGAaagaggtggagggggggggggtataatcaTTGAGAGGGAGATaaatggagaaaaagagagagaatcagaggtcTTACTCTTCCTGGCTTGGCTGCCTCACAAGGCCTTATTGTTGCCAATCATGCAGCTCTCTCACTCACCCCATGTTTCTCTTTTGCCCCTCCTTCCTCTGACTCCTTCCTCTGACTCCTTCCTCTGACTCCTTCCTCTGACTCCTTCCTCTGactccttcctctgtctccttcctctgtctccttcatctgtctccttcctctgtctccttcctctgtctccttcctctgtctccttcctctgaCTCCTTCCCTTTCTACTTTCAGCGATCTACAGATGACTCcatcccaccctccatctctctctccttccctcccatccctccctccttccctctccctccctctgtccttcccaccctccatccctccttcccttccatccctctccctccttcccctccatccctctccctccttcccttcatccagctctctccttccatccctccatctcttgtTTAATAACTGACGTTGCCTTAGGTCTATATTGAAGTTACAAACCAAATAAAAGGAGACGTCCACAACTTTTTTAAcaacaattttaaaaaaatatttaaaaaaaacacaacaaaatgtttttcTCTTTTGACTCATCCTCTTTTTTTTAAAGGATGATTCTGTGGTTGTTTAGGAAAAAGGTCATCTAGAGGTCATCTACACCTCTTTACGTTGTTTAGATGTGAATATCTATTCTAGGTCAATTATTACTGTGTGTACTATTATGATACCTGGGTCTcatcccaaatggagccctattccatatatagtgcactactttagaccagggcttgcaccctattcc
>TU874434
ccaaatatccacacacacacacacacacacactcagggaaCAGCAGAAACACAGACCACAGCTGCTGTTCCTTCACACGCTCACACAGATGTGAACactggtacacacacaaacacacactggcgCTCTCTCATCAACACACACGGGAaagaggtggagggggggggggtataatcaTTGAGAGGGAGATaaatggagaaaaagagagagaatcagaggtcTTACTCTTCCTGGCTTGGCTGCCTCACAAGGCCTTATTGTTGCCAATCATGCAGCTCTCTCACTCACCCCATGTTTCTCTTTTGCCCCTCCTTCCTCTGACTCCTTCCTCTGACTCCTTCCTCTGACTCCTTCCTCTGACTCCTTCCTCTGactccttcctctgtctccttcctctgtctccttcatctgtctccttcctctgtctccttcctctgtctccttcctctgtctccttcctctgaCTCCTTCCTCTGactccttcctctgtctccttcctctgactccttcctctctcTCCTTCCTCTGACTCCTTCCCTTTCTACTTTCAGCGATCTACAGATGACTCcatcccaccctccatctctctctccttccctcccatccctccctccttccctctccctccctctgtccttcccaccctccatccctccttcccttccatccctctccctccttcccttcatccagctccctccttccatctcactctccttcccaccctccatccctctctccctccttcccaccctccatccctctctccctccttcccacccaccctccatccctctccctccttcccttcatccagctctctccttccatccctccatctcttgtTTAATAACTGACGTTGCCTTAGGTCTATATTGAAGTTACAAACCAAATAAAAGGAGACGTCCACAACTTTTTTAAcaacaattttaaaaaaatatttaaaaaaaacacaacaaaatgtttttcTCTTTTGACTCATCCTCTTTTTTTTAAAGGATGATTCTGTGGTTGTTTAGGAAAAAGGTCATCTAGAGGTCATCTACACCTCTTTACGTTGTTTAGATGTGAATATCTATTCTAGGTCAATTATTACTGTGTGTACTATTATGATACCTGGGTCTcatcccaaatggagccctattccatatatagtgcactactttagaccagggcttgcaccctattcc

Function

GO:

id name namespace
GO:0042325 regulation of phosphorylation biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987247.1 False 1995 mRNA 0.45 3 8113636 8155916
TU874433 False 1024 lncRNA 0.47 3 8112588 8114070
TU874434 True 1190 TUCP 0.48 4 8112588 8114070

Neighbor

gene id symbol gene type direction distance location
brms1 LOC106560445 coding downstream 3070 8083612 ~ 8110566 (-)
LOC118965985 NA coding downstream 44412 8067827 ~ 8069224 (-)
LOC118965983 NA coding downstream 45913 8066300 ~ 8067723 (-)
LOC118965984 NA coding downstream 49612 8062226 ~ 8064024 (-)
LOC118965986 NA coding downstream 51780 8060584 ~ 8061856 (-)
LOC118936684 LOC106578100 coding upstream 65615 8221531 ~ 8253809 (-)
krcp LOC106578101 coding upstream 98879 8254795 ~ 8266598 (-)
LOC110531377 LOC106578102 coding upstream 121966 8277882 ~ 8283359 (-)
LOC110531375 LOC106578102 coding upstream 128162 8284078 ~ 8288596 (-)
LOC110531374 LOC106578102 coding upstream 135325 8291241 ~ 8295354 (-)
G767752 NA non-coding downstream 44650 8061337 ~ 8068986 (-)
G767766 NA non-coding downstream 58131 8055263 ~ 8055505 (-)
G767765 NA non-coding downstream 67975 8045443 ~ 8045661 (-)
G767763 NA non-coding downstream 70693 8042718 ~ 8042943 (-)
G767762 NA non-coding downstream 71215 8040835 ~ 8042421 (-)
G767800 NA non-coding upstream 7360 8163276 ~ 8163877 (-)
G767803 NA non-coding upstream 8364 8164280 ~ 8172506 (-)
G768383 NA non-coding upstream 17037 8172953 ~ 8173413 (-)
G768385 NA non-coding upstream 24802 8180718 ~ 8180958 (-)
G768387 NA non-coding upstream 26333 8182249 ~ 8182465 (-)
G767056 ovol1 other downstream 862561 7245644 ~ 7251075 (-)
LOC110531380 LOC106578126 other downstream 1143945 6963142 ~ 6969857 (-)
LOC110531366 LOC106578102 other downstream 1231518 6851197 ~ 6882912 (-)
G766850 LOC106578109 other downstream 1500224 6612079 ~ 6613412 (-)
G766749 NA other downstream 1649005 6457203 ~ 6464631 (-)
G768390 NA other upstream 33527 8189443 ~ 8191898 (-)
G768780 NA other upstream 826552 8982468 ~ 8990706 (-)
G770225 NA other upstream 2218793 10367459 ~ 10375854 (-)
G767753 NA non-coding upstream 1076 8115146 ~ 8115492 (-)
G767783 NA non-coding upstream 17342 8131412 ~ 8132354 (-)
G767792 NA non-coding upstream 35143 8149213 ~ 8151058 (-)

Expression


Co-expression Network