XLOC_026591 (suz12a)


Basic Information

Item Value
gene id XLOC_026591
gene name suz12a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 35849392 ~ 35865040 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051802
AGCTGTGTGCAATGCATTCAAGAAGGAGGGCGGGTAATATTCACAGCACTTTCGACTTTAGGCTGTTTCCCTGAGGGGCTTCTGGGTTTACTTGTAACATTATATTCGTGTATACAGACCACAGCGGAAGTTTTCCTGTAGCCAAACAGCAGTGAAGCGCATACATTTAAGCATACTTTCTGCCGCGTTTGTTTTGTAGTCCGTCGCGTGGAATCCAAATTACACATGATCCGGTAAGAGTTCACTAGGCGATCGCTTTTGGGACGTTATTACCCTGTTTTTCCTAATTGTCTACGTGCATTCGTGTTGTCGCCAATTCCATCCGGTCTGCAAATCAGCCTGAACTGCTCGTGGATGTTAACTGTTACTTTGTTGAGGGGGCGAACCGGTCTCGGCTGCTCTCCCTTTGTTTGGGCTCAGGACTCGGCTGAATCCGCTGGGCTTCCGTTTCAAACGTCTCGTTCGACCCCACGAACGCTATTTTAGGATGGCTCCACAAAAGCACGGCTCGGGTGGGAATGGTTTTTATGGCAACAGCGCGAGTAAAGCCGCTAATGGAGGAGCTCACGCATCGTCCGGTGTTGTGATGACTTCAGTCAAGCGACTCAAGATGGAGCAGATCCAAGCCGACCACCAACTCTTCCTGGAGGCGTTCGAGAAACCAACTCAAATATACAGATTTCTTCGCACAAGGAATCTCATAACTCCAATTTTCCTGCACCGATCTCTTACATATATGTCCCACAGAAACTCGCGAACTAATTCAAAAAGAAAGAGCTTCAGTTTGAATGATCTGCTGTTTAAAGTGGAGAAGTCAAAAGTGGATCCAGAATCTCACAATTTGGCTTCAAACCTTCAACTCACTTTCACTGGATTCTTCCATAAAACTGAGAAGCAGTTGCAGAACTCAGAGAATGAAGAAAACTCTGTGTCTGTAGAAGTGCTACTCGTCAAGCTCTGCCACAAGAAAAGAAAGGATGTGACTTGTCCAGTGAAGCAAGTGCCTACGGGTAAAAAGCAGGTTCCCCTCAACCCAGACATCAGTCCTACCAAGCTGGGAGCTTTTCCCACTCTGGTAGTGCCCAGCCACGAGTTTGAGCCTGTTAACAGCAACACGGTGAAGTCCTACTCCCTTCTGTTTAGAGCGTCTCGTCCATGGGGAAGAGAGCCCAATGGCATGACCACCAGAGATACCAATGTTATTGAAGAGCTATCTAACAGGAAGAAGAGATACTGCTCTCATCAGGATGATGGAGAAACTACATTTGTGGCACAAATGACTGTTTTTGATAAAAATAGACGCCTCCAGCTTTTGGATGGTGAATATGAAGTCTCCATGCAGGAGATAGAGGAGAGCCCTGTAGGCAAGAAAAGGGCGACTTGGGAAACAATATTAGATGAGAAGTGGGTTCCTCCCTTCGAGACCTTTTCTCAGGGACCAACACTGCAGTTCACTTTGCGATGGACTAATGACACAGCGGACAAAGCGACAGCACCAGTTGCTAAACCGCTGGCCACACGCAATTCTGAGTCCAGCACAGTAGACAGCAGTAAAACTAGTAATGTAAAGCCACCACAGGCTGTAGCAGTTAATGATTCTTTAGGCACTGATCTACCAGTTAGAAGAGAACAAACTCACATTGAACCTTGTCAGAAACTACATGTTTATTATCAGTTCCTGTATAACAATAACACACGGCAGCAGACAGAGGCCAGAGATGACCTGCACTGTCCCTGGTGCACGCTGAACTGCCGTAAGCTCTACAGCCTCCTTAAGCACCTCAAGCTCTCGCACAGCCGCTTCATCTTCAACTATGTGCCTCATCCTAAAGGAGCCAGGATAGATGTGTCAATCAATGAATGCTATGACGGGTCTTATGTGGGCAACCCTCAGGACATCCTCTGCCAGCCTGGCTTTGCCTTTAGCCGTAATGGTCCAGTAAAGAGGACTCCAGTTACACAGATCCTTGTCTGCAGGCCTAAGCGCTCAAAGCCCAGCCTTTCTGAGTTCCTGGAGCCGGAGGATGGAGAGCAGGAGCAGCAGCGAACGTACATCAGTGGCCACAACCGCCTGTACTTCCACAGTGACAGCTGCACGCCACTTCGACCACAGGAAATGGAAGTGGACAGTGAGGACGAGAGAGACCCGGATTGGCTCAGGGAGAAGACTGCTATGCAAATTGAGGAGTTCACAGATGTTAACGAAGGAGAGAAAGAGATCATGAAACTGTGGAACCTGCTCGTGATGAAACATggATTCATAGCTGACAACCAAATGAATCAGGCCTGTATGTCGTTTGTGGAGCAGCACGGCACCATCATGGTGGAGAAGAATCTGTGCCGAAACGCCCTGCTACATCTCATCAATATGCACGACTTCGGCTTGATAACCACAGCAACCATCGACAAGGCCATGACTCACCTGAGAGATCTCACACAGCAATCCATAGCGCAAGACTGACAGTGGTGAATCAGCAAACCTGAATACTGAAGACCCTGAGTCACTGAAACGCTCTGTCAGACGCCTCCTGGATATGAACACGCTCTGCACACTCACAGGGTTCAGGATGTTGTGTTGGCAGCAGTTGTGTGGTTATACACGGTCATGAAGTCATCAGAAGACAACTGTTTCGATGTCAATTTACTTGAAGATGCCGTTCGTCTTTATGGTGGACAGTACAAGCAGGTCTGATTTGTATTTTCTTTCTCCCCATCCACACAAAACCCTGCAACTCTTGCAGATTTTTAGCACTTGTTTTAGGTGCCCATTTTTAAAAGAACTAAGAagattgttttttaatatattttgaataCCGATGGACTCAAATGGCTCCTACACACTtgcttttattgtgtatttttcaCAGGGGCTGACTAACTCGTATGGAAAACTTGAACATTTCAGTTTTGGCTGTGTATAGGgttgtttttctttgtatgtgtgtgggtAGTTTGTCAATGTTgaactacagtttttttttcctgaactCCTAGACttaatagtttgctctgatctggtGCTTGAAGTAAAAATACttcaaatgaaatgttttttttattattggattCTCAGATTGAAGTCGTCTACATCTACACTGCAGTGCTTATGAAGTTTTTCAGAGCCTTAATTCCACTGATTTTGTAACACAGAGACGTACAGGGTACTTAAACCTTGCGGAATTGTTTACACTTGCCTTACCCATGGAAACATGGACTTTAAGCAGGGTTTGAACTTTGGTGTAAACCATTGTGATGCGGTTGAATTTACTTGTTTGGAAAAATTTCAATGATGATTTCCTGCACACAACACGTTGTCGagttaaatgttttagtttaatCACAGTGCTCTACTGGTTTTCATGGTGCCCAGGTGTTTCTAAGGGAAAGCTGTTGTATAATGCGTGTATATAAAAGATTGATGGTGATCTGCATTCCGGAAGGAAGATTATTTTAGACCAAAGTGAATTTGTTCCTCAAAGTTCGCatacttgtttttgttgtttgcatCGGTTTTAAAACAAAGGGATCTGCTTTATTTTGTGCACTGGTTTTAAAATGTTTCTGCTTATCATTGGAGATCAATAACTTAACTGGCCGAAGCAGTTGTGTAACTGTCTTAATACAGCATTTGTTACACAAGACGTGGATTGCTGATTAAAAATTAACGTCAAAAGATATTTATATCATCAATATGATAGGAACATTATGAAACATGCTTGTGTTTCTGAATTATGCTGCAGCAAGTGCTTGAGGTtgctctttatttaaaataaagatattGTCGTTTTGTTTTGCCATTAATACCTCATGTTCGGACATTTGTTTTGACCTTTTGTGGTGCTAAGAGATTCCATTGTCATGTCTGAGTCAAAgtgcatttttacaaaatattttttttttgggtgaggAATAAATGTAAGTATATTTGAAATGACTTAACattgtcattcagtgtaacataTTAAAGGGAAAATTACACTGCATACTTATTGTCATGTATATATGAAAACAAACGAGGGCATATGAAAGGGTAttttaaaagggttttaaaaatactttgaCAATTGGAGGATGTTTGCAAAgtgtaaagatttaaaatgacattacttAGTATTTTTGTGGCTACATTGAAGAGTTGTTATATGTTATCAAAAGATTCTTGTCATTTACTAAAATGCCATTTTGTTTAAGTCATTGTAAAAATGTTTGATAACTATTATTTTAacggggtggtccactacaaatatcgtattttaaacttta
>TCONS_00051803
TGGGTTCCTCCCTTCGAGACCTTTTCTCAGGGACCAACACTGCAGTTCACTTTGCGATGGACTAATGACACAGCGGACAAAGCGACAGCACCAGTTGCTAAACCGCTGGCCACACGCAATTCTGAGTCCAGCACAGTAGACAGCAGTAAAACTAGTAATGTAAAGCCACCACAGGCTGTAGCAGTTAATGATTCTTTAGGCACTGATCTACCAGTTAGAAGAGAACAAACTCACATTGAACCTTGTCAGAAACTACATGTTTATTATCAGGTGAGTAATAAGCATCTATAAATTTACCAACAAAGTTTTAATCGAGACTGTACACAGAGTTACATCACGTATATGTCACCCAGGTCTTTAAATTGACCAACAAAAGGTTGTGGAGTTTCTTGATTGTTTTTCTGCAGCGGTCCATAACTCCTGATCTGTTGTCGGTCTTAAATGGGGCATCTATTGTGTGTTCACGGTCTcctgtgtctgtttttttttgcGTATTAGTTCCTGTATAACAATAACACACGGCAGCAGACAGAGGCCAGAGATGACCTGCACTGTCCCTGGTGCACGCTGAACTGCCGTAAGCTCTACAGCCTCCTTAAGCACCTCAAGCTCTCGCACAGCCGCTTCATCTTCAACTATGTGCCTCATCCTAAAGGAGCCAGGATAGATGTGTCAATCAATGAATGCTATGACGGGTCTTATGTGGGCAACCCTCAGGACATCCTCTGCCAGCCTGGCTTTGCCTTTAGCCGTAATGGTCCAGTAAAGAGGACTCCAGTTACACAGATCCTTGTCTGCAGGTCTG
>TCONS_00051804
GGACTCGGCTGAATCCGCTGGGCTTCCGTTTCAAACGTCTCGTTCGACCCCACGAACGCTATTTTAGGATGGCTCCACAAAAGCACGGCTCGGGTGGGAATGGTTTTTATGGCAACAGCGCGAGTAAAGCCGCTAATGGAGGAGCTCACGCATCGTCCGGTGTTGTGATGACTTCAGTCAAGCGACTCAAGATGGAGCAGATCCAAGCCGACCACCAACTCTTCCTGGAGGCGTTCGAGAAACCAACTCAAATATACAGATTTCTTCGCACAAGGAATCTCATAACTCCAATTTTCCTGCACCGATCTCTTACATATATGTCCCACAGAAACTCGCGAACTAATTCAAAAAGAAAGAGCTTCAGTTTGAATGATCTGCTGTTTAAAGTGGAGAAGTCAAAAGTGGATCCAGAATCTCACAAGTAAGCTGTTTTTGattcagatttattttgtttgcttaCTGTCTCAGTGCATACAGAAGTTTTAACTGCAGTCTTTTTGCTGTGCAGTTTGGCTTCAAACCTTCAACTCACTTTCACTGGATTCTTCCATAAAACTGGTGAGCTAAAATTAAGGTTTTGAGTGCAAATCATAATACTTCTGTTTAGGGCTAGGCCGATAAACGATATATCGAAttgcaataaaatttatgtccataagctctggacttttttttttttactctatattgatctaagagcaac

Function

symbol description
suz12a Predicted to enable chromatin DNA binding activity. Predicted to contribute to histone methyltransferase activity. Predicted to act upstream of or within chromatin organization. Predicted to be part of ESC/E(Z) complex. Predicted to be active in nucleus. Is expressed in gonad; midbrain hindbrain boundary; pharyngeal arch; and visual system. Orthologous to human SUZ12 (SUZ12 polycomb repressive complex 2 subunit).

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0035098 ESC/E(Z) complex cellular_component
GO:0005634 nucleus cellular_component
GO:0031490 chromatin DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0042054 histone methyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-36 Predicted to enable chromatin DNA binding activity. Predicted to contribute to histone methyltransferase activity. Predicted to act upstream of or within chromatin organization. Predicted to be part of ESC/E(Z) complex. Predicted to be active in nucleus. Is expressed in gonad; midbrain hindbrain boundary; pharyngeal arch; and visual system. Orthologous to human SUZ12 (SUZ12 polycomb repressive complex 2 subunit).

Ensembl:

ensembl_id ENSDARG00000070256

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051802 False 4263 mRNA 0.43 16 35849392 35865040
TCONS_00051803 False 805 lncRNA 0.46 3 35857130 35858160
TCONS_00051804 True 703 lncRNA 0.42 4 35862376 35864621

Neighbor

gene id symbol gene type direction distance location
XLOC_026590 caskin1 coding downstream 48246 35632773 ~ 35801146 (-)
XLOC_026589 gng13b coding downstream 247159 35589212 ~ 35602233 (-)
XLOC_026588 NA coding downstream 274941 35565128 ~ 35574451 (-)
XLOC_026587 dctn5 coding downstream 294583 35550870 ~ 35554809 (-)
XLOC_026586 ndufab1b coding downstream 308011 35535121 ~ 35541381 (-)
XLOC_026592 rab11fip4a coding upstream 158228 36023268 ~ 36115354 (-)
XLOC_026593 coil coding upstream 254742 36119782 ~ 36127234 (-)
XLOC_026594 engase coding upstream 271490 36136530 ~ 36153591 (-)
XLOC_026595 BX897685.1 coding upstream 305903 36170943 ~ 36171968 (-)
XLOC_026596 csnk1da coding upstream 308163 36173203 ~ 36210344 (-)
XLOC_026585 NA non-coding downstream 901331 34947402 ~ 34948061 (-)
XLOC_026580 NA non-coding downstream 1207419 34641048 ~ 34641973 (-)
XLOC_026572 NA non-coding downstream 1708211 34139637 ~ 34141181 (-)
XLOC_026558 BX649502.11 non-coding downstream 1762909 34086041 ~ 34086483 (-)
XLOC_026600 NA non-coding upstream 455199 36320239 ~ 36323625 (-)
XLOC_026606 NA non-coding upstream 718060 36583100 ~ 36587136 (-)
XLOC_026612 FO744883.1 non-coding upstream 890993 36756033 ~ 36756149 (-)
XLOC_026617 NA non-coding upstream 1088585 36953625 ~ 36954088 (-)
XLOC_026618 CT573704.1 non-coding upstream 1102831 36967871 ~ 36967993 (-)

Expression


Co-expression Network