LOC110531377 (LOC106578102)


Basic Information

Item Value
gene id LOC110531377
gene name LOC106578102
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 8277882 ~ 8283359 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614568.2
ATTCCTTGACTAAAACACGGAAGTAGAATTGGAGTAAAGAAATACCCACTGACAGATCTGAATAGGCTACCCAACTCTCATTCGACTGAAAATGTATAAACTACAGTTGTTGAGTGTGTTTTTAAATGATCGTTTAACTGCGGCTGCTGTGGAGATTTTTGGGGAAGTAGAGAAAATGGTAGTGGAGTACCAGGAGGAGAATAATCGTCTACGGAGCCTGCTGCGGATCACACCGGACATAAAACTATGTAGAATAGACTCCCTGcagctctctctcgctgactctgaAGAGGAGGTTCCCCCTGAGCAGCAGCACTGTGAGCAGGAGTGGAGCCCCAGTCTGGGGCAGAAGGACCCAGAGCCCAcacagattaaagaggaacaggaggaagtcaggaccagtcaggaggaagagcagcttcaaGGGGTGGAGCCTGATATCATAGAGTTCAATTTCACTCCTTCCTGTGTGAAAAGTGAATGCGATCAGGAAGACCCACTTCAGTCCTTGACTCTTCCCCAAACCCAGActgtggagaacagagagagtgactCTAAACCAGTAGATCCTGAACCTTTTGGCACTGTGACCCACCTTAAGGGTTTCAACATTCCGTGTGGCCCTCCAGATAATCAGAACAATGCCTACAGCCACAGTACAGCCATAAGCAGTGACCCAGTAGAACTTGACAGTAGCCCACAATTGGATCCCAACCCACAATTGGATCTGATCCCACCAATGGGGGAACTCTGCACCTGCCCCTTTTGTGGTAAGACCTTCAAACAAAAAGGAAATCTGTCCATGCACATGaggattcacacaggagagaaaccttttagctgtggtgactgtgggaagagctttATTCAGAAGGGGGACCTAAGGAGACACAtactgactcacacaggagagaaaccattcaGCTGTAATTTTTGCTGTAAAAGCTTCAATCAGAAAGGGGACCTAAGGAGACATATcctgactcacacaggagagaaaccatttagctgtgaTTACTGTGGTAAAGGATTCATTCGCAAGGAGCACCTAACTGCACATATACGGACTCACACGGGGGAAGTTTCGGTCTCAGGCAGAACCTAACCACGCAGAAACTGATATAGATCTATGATCGATTTTAATGTTGAAAACATTctgtaaataaagtttgatttgaatgaTTGAGGTAACGATCAAACAGCACAGAGGATTGTAGGAAATTCACAGGTCTGCTGTTCAAAGTCTGTAGTTCTCTTCATTAGAAACAGGAATATCTGATGGTTTGATTAGGAATGTCTGTCATGGTGATAAAGgaaggttgttgttgttgatgccaCGAAATACAATTCCAGAAAATATCTCCTTCCATTTTCTCAAGAGTTTCTCATCAATTCAGTTGCTGCTCGTGCTGCTCATTCACGATCTGAAATTGCGATTCGATATTGCGATGTTATTGCTGCTATTTAATATTTTCGTAAACATATCGCTCCCTATATGTCTcctgcagagagacgagagagcatcagaaaatgtgttttgatcatggaaataaaagtgatgaaaacatgttggctcaccattt
>TU875321
AAAGAAATACCCACTGACAGATCTGAATAGGCTACCCAACTCTCATTCGACTGAAAATGTATAAACTACAGTTGTTGAGTGTGTTTTTAAATGATCGTTTAACTGCGGCTGCTGTGGAGATTTTTGGGGAAGTAGAGAAAATGGTAGTGGAGTACCAGGAGGAGAATAATCGTCTACGGAGCCTGCTGCGGATCACACCGGACATAAAACTATGTAGAATAGACTCCCTGcagctctctctcgctgactctgaAGAGGAGGTTCCCCCTGAGCAGCAGCACTGTGAGCAGGAGTGGAGCCCCAGTCTGGGGCAGAAGGACCCAGAGCCCAcacagattaaagaggaacaggaggaagtcaggaccagtcaggaggaagagcagcttcaaGGGGTGGAGCCTGATATCATAGAGTTCAATTTCACTCCTTCCTGTGTGAAAAGTGAATGCGATCAGGAAGACCCACTTCAGTCCTTGACTCTTCCCCAAACCCAGActgtggagaacagagagagtgactCTAAACCAGTAGATCCTGAACCTTTTGGCACTGTGACCCACCTTAAGGGTTTCAACATTCCGTGTGGCCCTCCAGATAATCAGAACAATGCCTA

Function

NR:

description
chorion transcription factor Cf2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614568.2 False 1583 mRNA 0.44 2 8277882 8283359
TU875321 True 613 TUCP 0.48 2 8278817 8283324

Neighbor

gene id symbol gene type direction distance location
krcp LOC106578101 coding downstream 11284 8254795 ~ 8266598 (-)
LOC118936684 LOC106578100 coding downstream 24073 8221531 ~ 8253809 (-)
LOC110510419 LOC106560462 coding downstream 121966 8112588 ~ 8155916 (-)
brms1 LOC106560445 coding downstream 167316 8083612 ~ 8110566 (-)
LOC118965985 NA coding downstream 208658 8067827 ~ 8069224 (-)
LOC110531375 LOC106578102 coding upstream 719 8284078 ~ 8288596 (-)
LOC110531374 LOC106578102 coding upstream 7882 8291241 ~ 8295354 (-)
LOC110531370 LOC106578104 coding upstream 18342 8301701 ~ 8309914 (-)
LOC118965987 NA coding upstream 35640 8318999 ~ 8321009 (-)
LOC110531383 LOC106578065 coding upstream 40866 8324225 ~ 8330124 (-)
G768425 NA non-coding downstream 1397 8276173 ~ 8276485 (-)
G768414 NA non-coding downstream 30472 8240270 ~ 8247410 (-)
G768407 NA non-coding downstream 52829 8223935 ~ 8225053 (-)
G768406 NA non-coding downstream 54311 8222864 ~ 8223571 (-)
G768402 NA non-coding downstream 56605 8220971 ~ 8221277 (-)
G768483 NA non-coding upstream 74896 8358255 ~ 8365890 (-)
G768504 NA non-coding upstream 124774 8408133 ~ 8408436 (-)
G768528 NA non-coding upstream 176476 8459835 ~ 8501302 (-)
G768554 NA non-coding upstream 205804 8489163 ~ 8489756 (-)
G768390 NA other downstream 85984 8189443 ~ 8191898 (-)
G767056 ovol1 other downstream 1026807 7245644 ~ 7251075 (-)
LOC110531380 LOC106578126 other downstream 1308191 6963142 ~ 6969857 (-)
G768780 NA other upstream 699109 8982468 ~ 8990706 (-)
G770225 NA other upstream 2091350 10367459 ~ 10375854 (-)
G770549 NA other upstream 2689014 10972373 ~ 10974413 (-)
G770627 LOC106577876 other upstream 2824469 11107828 ~ 11108159 (-)
G771457 NA other upstream 3345257 11628616 ~ 11629588 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G82280 NA non-coding NC_053119.1 CM020916.1 4262135 ~ 4316293 (-)
bowfin (Amia calva) G136051 NA non-coding CM030138.1 CM030138.1 16193975 ~ 16196114 (+)
tiger barb (Puntius tetrazona) G74908 NA non-coding NC_056708.1 CM032077.1 5097644 ~ 5098564 (+)