LOC110531375 (LOC106578102)


Basic Information

Item Value
gene id LOC110531375
gene name LOC106578102
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 8284078 ~ 8288596 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987236.1
aattgtgcaccaccccatgGGCCTCcgggtcgcggccggctgcaacagagcctggacacGAACCCAGaatcactgcgatgcagtgccttagaccaatgcgccactcgggaggcccttaaATTAGGAATTCTAATGGATGTTTCATGGATTAGactccctgcagctctctctctctgtctctgaagagCAGGTTCCCCCTGAGCAGCAGCACTGTGAGCAGGAGTGGAGCCCCAGTCTGGGGCAGGAGGACCCAGAGACCACACTGATTAAAGAAGAACAGGAGGAACTCAGCACCagtcaggaggaagagcagcttcaaGGGTTCTTTGATACCAAAGACTTTATATTTACTCCTTCCTGTGTGAAAGGTGAATGTGATCAGGAGGACCCACTTCAGTCCCTGACTCTTCCCCAAACCCAGActgtggagaacagagagagagactttaaacCAGTGGATCGCAAACCTTACGCCACTGTGACCCGCCTAAAGGATCTCAACAATCTGTGTGACCCTCCAGATAATCAGAACAATGCTTTCATCCTCAGCTCTGCCATAAGCAGCGACCCAGTAGGACGTGACAGCAGCCCACTATTGGATCCCAACCCACTGAGTCTCAACCCACCAATGGAGAAACAGTGTTTCAAACCCAGCACATCTAGAAGAACTTACCACTGCCGTGACTGTGGTGAAACATTTGCACTGAAAGCTGACCTGCAGAGGCATGTGACTCACACCAGGAAGAGACCCAGTGAATGCCTCTTCTGCAAAAAACTCTATACCTCCACCTGTAAACTGAAGGCCCATGTCCAACTCTGTCACGGTGGTAAACCCTGCACCTGCCCCTTTTGTGGGAAGACCTTCAAACAAAAAGGACATCTGTCCAGGCACATGagtattcacacaggagagaaaccattttgCTGTGgtgactgttggaaaagcttcAATCGTAAGGAGCACCTTACCAGGCATATACGCATTCACAgaggagagaaaccttttagctgtggtgactgtgggaaaagcttcaatcGCAAGGAGCACCTAACTGAACATAGACAGACTCACACAGGAGAAAAACAACATGGCTGCTCAGTCTGTGGTAAAAGATTCACTCGGAAGACTCATCTACTGAAGCATATGGACAATATCCACAAAGAGGGAAAAACAGACAGAAGAAAGAAAATCTTCAGTCAGAAGATGGGAATAAAAAGGCAGGATGTGGACAACACTCGTAGGAAAGGAAAGCAACCCCAGACCATTCATACTGTGGGTCTCAGATAAATACATATACTGTACCATGGacttaatgttgtaaataaagtttgatttgatttgaatgacgAGGTAATGATCAAACCGTACAGAGTATTGTAGGAAATTCACAGGTCTgctgtaataataataaataataataatt
>XM_021614566.2
TGTCATAGAAGTCTTTGTTTTGATTTTGCATTCTAGCTTGTGTGGAGTAAAGGCTTACTGACTGAATAGACTACCCAAATGTCATTCGACTGAAAATGTTTAAACTACAGTTGTTTCGTGTGTTTTTAAATGAGCGTTTAACGGCGGCTGCTGTGGATATTTTTGGGGCAGTTGAGAAAACGGTAGTGGAGTACCAGGAGGAGAATGATCGGCTACGGAGACTGCTGGGGATCACACCGGAGCTCATTACACCAGAGTTACAACTATGTCGAACTGGTGactccctgcagctctctctctctgtctctgaagagCAGGTTCCCCCTGAGCAGCAGCACTGTGAGCAGGAGTGGAGCCCCAGTCTGGGGCAGGAGGACCCAGAGACCACACTGATTAAAGAAGAACAGGAGGAACTCAGCACCagtcaggaggaagagcagcttcaaGGGTTCTTTGATACCAAAGACTTTATATTTACTCCTTCCTGTGTGAAAGGTGAATGTGATCAGGAGGACCCACTTCAGTCCCTGACTCTTCCCCAAACCCAGActgtggagaacagagagagagactttaaacCAGTGGATCGCAAACCTTACGCCACTGTGACCCGCCTAAAGGATCTCAACAATCTGTGTGACCCTCCAGATAATCAGAACAATGCTTTCATCCTCAGCTCTGCCATAAGCAGCGACCCAGTAGGACGTGACAGCAGCCCACTATTGGATCCCAACCCACTGAGTCTCAACCCACCAATGGAGAAACAGTGTTTCAAACCCAGCACATCTAGAAGAACTTACCACTGCCGTGACTGTGGTGAAACATTTGCACTGAAAGCTGACCTGCAGAGGCATGTGACTCACACCAGGAAGAGACCCAGTGAATGCCTCTTCTGCAAAAAACTCTATACCTCCACCTGTAAACTGAAGGCCCATGTCCAACTCTGTCACGGTGGTAAACCCTGCACCTGCCCCTTTTGTGGGAAGACCTTCAAACAAAAAGGACATCTGTCCAGGCACATGagtattcacacaggagagaaaccattttgCTGTGgtgactgttggaaaagcttcAATCGTAAGGAGCACCTTACCAGGCATATACGCATTCACAgaggagagaaaccttttagctgtggtgactgtgggaaaagcttcaatcGCAAGGAGCACCTAACTGAACATAGACAGACTCACACAGGAGAAAAACAACATGGCTGCTCAGTCTGTGGTAAAAGATTCACTCGGAAGACTCATCTACTGAAGCATATGGACAATATCCACAAAGAGGGAAAAACAGACAGAAGAAAGAAAATCTTCAGTCAGAAGATGGGAATAAAAAGGCAGGATGTGGACAACACTCGTAGGAAAGGAAAGCAACCCCAGACCATTCATACTGTGGGTCTCAGATAAATACATATACTGTACCATGGacttaatgttgtaaataaagtttgatttgatttgaatgacgAGGTAATGATCAAACCGTACAGAGTATTGTAGGAAATTCACAGGTCTgctgtaataataataaataataat

Function

NR:

description
zinc finger protein 184-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987236.1 False 1424 mRNA 0.47 2 8284078 8286568
XM_021614566.2 True 1547 mRNA 0.46 2 8284082 8288596

Neighbor

gene id symbol gene type direction distance location
LOC110531377 LOC106578102 coding downstream 719 8277882 ~ 8283359 (-)
krcp LOC106578101 coding downstream 17480 8254795 ~ 8266598 (-)
LOC118936684 LOC106578100 coding downstream 30269 8221531 ~ 8253809 (-)
LOC110510419 LOC106560462 coding downstream 128162 8112588 ~ 8155916 (-)
brms1 LOC106560445 coding downstream 173512 8083612 ~ 8110566 (-)
LOC110531374 LOC106578102 coding upstream 2645 8291241 ~ 8295354 (-)
LOC110531370 LOC106578104 coding upstream 13105 8301701 ~ 8309914 (-)
LOC118965987 NA coding upstream 30403 8318999 ~ 8321009 (-)
LOC110531383 LOC106578065 coding upstream 35629 8324225 ~ 8330124 (-)
LOC110531384 LOC106578065 coding upstream 52183 8340779 ~ 8343063 (-)
G768425 NA non-coding downstream 7593 8276173 ~ 8276485 (-)
G768414 NA non-coding downstream 36668 8240270 ~ 8247410 (-)
G768407 NA non-coding downstream 59025 8223935 ~ 8225053 (-)
G768406 NA non-coding downstream 60507 8222864 ~ 8223571 (-)
G768402 NA non-coding downstream 62801 8220971 ~ 8221277 (-)
G768483 NA non-coding upstream 69659 8358255 ~ 8365890 (-)
G768504 NA non-coding upstream 119537 8408133 ~ 8408436 (-)
G768528 NA non-coding upstream 171239 8459835 ~ 8501302 (-)
G768554 NA non-coding upstream 200567 8489163 ~ 8489756 (-)
G768390 NA other downstream 92180 8189443 ~ 8191898 (-)
G767056 ovol1 other downstream 1033003 7245644 ~ 7251075 (-)
G768780 NA other upstream 693872 8982468 ~ 8990706 (-)
G770225 NA other upstream 2086113 10367459 ~ 10375854 (-)
G770549 NA other upstream 2683777 10972373 ~ 10974413 (-)
G770627 LOC106577876 other upstream 2819232 11107828 ~ 11108159 (-)
G771457 NA other upstream 3340020 11628616 ~ 11629588 (-)

Expression


Co-expression Network