LOC110531374 (LOC106578102)


Basic Information

Item Value
gene id LOC110531374
gene name LOC106578102
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 8291241 ~ 8295354 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614565.2
gttttctgttcccaaagtTAAGCTTTGAAGACTTTATCCTGTGCAAAAGTCTTTCAGCATCGCTTTGTCTAAAAGGAGTGCAAAGGCGAATTTAGTTATTGCACAAGgataggcgttccctaacggaaaagTGCGGATGTATGCTAGAACAGTCCAATAGGATCTCGTTAGCTCGTGCATGGCTCTGCCCACcgccttgcttgttctgcccactacgATAATTTATTCCCATTGGAAACGaaaggctgtggtctatcttggtttagttatgcAAGTCTTTGGAGCTATTTTCCTAAATTCCTTGACTAGAACACGGAAGTAGGATTGGATACGACTGTGTCACAGACAGAAGGGGATTTAGTTATACATGTCTTTGACTTTGTTTTGAATTCCCTGTGTGGAGTAACGAAAGATCAACTGACTAAACTGAAGACTGAAAATGTCTAAACTACAGTTGCTGCGTGTGTTTTTGAATGATCGTTTAACGGCGGCTGCTGTAGAGATATTCGGGGCAGTTGAGAAAACGGTAGTGGAGTACCAGGAGGAGAATGATCGGCTACGGAGACTGCTGCGGAGGACACCGGAGATACAACTATGTGGAATAGACTCcctgcagctctctgtctctgaagaGGACTTTCCCCCTGAGCAGCAGCACTGTGAGCAGGAGTGGAGCCCCAGTCTGGGGCAGAAGGACCCAGGGCCCACACAGattaaagaggaagaggaggaagtcaggaccagtcaggaggaagagcagcttcaaGGTCTGGAGCCTGATATCATGGAGTTCATATTCACTCCTTCAGGTGTGAAAAGTGAATGTGATCAGGAGGACCCACTTCAGTCCTTGGCTCTTCCCCAAACCAAGACTgtggagaacagagggagagactcTAAACCAGTGGATCTCAAACCTTTTGTTACTGTGACCCACTTAAAAGGTCTCGACATTCCCTGTGACCCTACAGATACTCAAAATATTGCCTTCAGCCACAGCTCAGCCATAAGCAGAGACCCAGTAGGACTCGACAGCAGCCCACCATTGCATCCTAAACCACCATTGGATCAAAACCCACCAATGGGGGAACACGGTTCCAAACTCAGCACCACGTCTAGAAAAACTCACCACTGCCGTGACTGTGGTGAAATGTTTCTTCTGAAAGCTGACCTGCAGAGGCACGTGACTCTTACCAAGAATATAATCAGTGAATGCCGCTTctgcaataaacaatacaattccACCTGTAAATTGAAGGCCCATATCCAACTCTGTCACATTGAGATATCCTGCACATGCCCTGTTTGTGGCAAGACCATCAAACACAAAGGAGATCTGTCCAGGCACATGAGTATTCACACAGGAGAaaaaccatttagctgtggtgactgtggaaAAAGCTTCAATCAGAAGGGGCACCTGAACTTGCACATACTGagtcacacaggagagaaaccatttaaTTGTagtgactgtgggaaaagcttctATCAGAAGGGAGACCTAGGGAATCATATGCTGACTCACACACaagagaaaccatttagctgtggggactgtgggaaaagcttctATCAGAAGGGACACCTTACAGATCATATacggactcacacaggagagaaaccatttagctgtggtgactgtgggaaaagcttcaatTTGAAGGGAAACCTAAGGAAGCATAaactgactcacacaggagagaaaccatttagctgtaGTGACTGTGGCAAAAGCTTCAGTCAAAAGACTAACTTGCTGACGCATGTCAAAAACATCCACAAAGGAAGAAAACAGGATGAATAAGTGAAAGAATAAAGAAAATTAGGATCAAAATGTTCTGTCAGAAGATAGGAATAACAGGCAGGATGTGGACAGCACTCGTAGGAAAGGAAAGCTACTCTGGATAATTTATGCGTTTGGTTCGAGATCAATAGATGGGGGTATGACGGATTTACTATTGTAAAACATTCTATAtgaatacagtttgatttgaattATGATGTAATGCTTAAACATTACACAGCATCGTAGGAAGCTCACAGGTCTGCTGTTCAGTCTGTTTTCACGTTATTAGAAACAGGAATTCCTGGTTATTTGTTTTCGAATGTCTCTCAGGTGATGAGAGAATGGTCTGACTGATGCGATTGACACATTAAAACGTTAAAACACTTTCTGTATAATATCTCATCAAACTATTTCCCATCGATTTTTGACCAAATCTTGCTCATTCATGATATTGATTTCAGATTTTATGGAGTAATGATATACAGTAGACTCCTGATAATTGAttaaaagcattccatgtgaagctggttgagagaaaatagtaaaaataaagaaaaaccctttttaaaatgttttaatttaaatgattatacaaaattcttgcaaccaatagaatgttatatatatgggggatacaaccttcccagctctgcagagtTTTGCTGCTTAGttaaatatatggcaaatataaatAAAACTGGATGGATGTTAGTTATGACTGCTTTGTGTCATGTGGTGTCGTCTCTAACTTCTTGccatttgtgctgttgtctgggcCCAATAATGTGCTGTtaacatgttttgtgctgctaccatgttgcgtTGCTACCatattgttatgttgtgttgctg

Function

NR:

description
gastrula zinc finger protein XlCGF46.1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614565.2 True 2641 mRNA 0.42 2 8291241 8295354

Neighbor

gene id symbol gene type direction distance location
LOC110531375 LOC106578102 coding downstream 2645 8284078 ~ 8288596 (-)
LOC110531377 LOC106578102 coding downstream 7882 8277882 ~ 8283359 (-)
krcp LOC106578101 coding downstream 24643 8254795 ~ 8266598 (-)
LOC118936684 LOC106578100 coding downstream 37432 8221531 ~ 8253809 (-)
LOC110510419 LOC106560462 coding downstream 135325 8112588 ~ 8155916 (-)
LOC110531370 LOC106578104 coding upstream 6347 8301701 ~ 8309914 (-)
LOC118965987 NA coding upstream 23645 8318999 ~ 8321009 (-)
LOC110531383 LOC106578065 coding upstream 28871 8324225 ~ 8330124 (-)
LOC110531384 LOC106578065 coding upstream 45425 8340779 ~ 8343063 (-)
LOC110531390 LOC106578068 coding upstream 61227 8356581 ~ 8400668 (-)
G768425 NA non-coding downstream 14756 8276173 ~ 8276485 (-)
G768414 NA non-coding downstream 43831 8240270 ~ 8247410 (-)
G768407 NA non-coding downstream 66188 8223935 ~ 8225053 (-)
G768406 NA non-coding downstream 67670 8222864 ~ 8223571 (-)
G768402 NA non-coding downstream 69964 8220971 ~ 8221277 (-)
G768483 NA non-coding upstream 62901 8358255 ~ 8365890 (-)
G768504 NA non-coding upstream 112779 8408133 ~ 8408436 (-)
G768528 NA non-coding upstream 164481 8459835 ~ 8501302 (-)
G768554 NA non-coding upstream 193809 8489163 ~ 8489756 (-)
G768390 NA other downstream 99343 8189443 ~ 8191898 (-)
G767056 ovol1 other downstream 1040166 7245644 ~ 7251075 (-)
G768780 NA other upstream 687114 8982468 ~ 8990706 (-)
G770225 NA other upstream 2079355 10367459 ~ 10375854 (-)
G770549 NA other upstream 2677019 10972373 ~ 10974413 (-)
G770627 LOC106577876 other upstream 2812474 11107828 ~ 11108159 (-)
G771457 NA other upstream 3333262 11628616 ~ 11629588 (-)

Expression


Co-expression Network