LOC118965987


Basic Information

Item Value
gene id LOC118965987
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 8318999 ~ 8321009 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053161.1
aatgagaacttgttctcaactagcctacctggttaaataaagGGTGACATCTACATCCCTGAAAAAGGTTTTCATCCTGGAGGAGACTGCAGGAGGAGGCACAAGCAAATCCATGTTATTTATAAGGCTATTGTTTATTTCAAGACACAATCTGTCATCCCTGAGGCCATTTTGGACATAAAATGGACAATACACAGTGATTCTTGAATATACCTATAGCCTAATAGATGCCTTAATTGTTTTCTACCAACAGGAAAGAACGGTTAGTACAGCATGCCAAACTGACCCCTGGGTGCCAGAGTGTTCCTGTGCTGTGGTGAAGAGGTCCACCGGGACCATCACGAAAGAGCTCGGGGCCCAGCTAGATTACGACGAATACCATCAGTATACTACTGAGTCCTGCCCCTATACGCCACAGATGGAGCTGACGGAGAGTGAGATCAGTGAAGACCAGAACTCGCTGTGAGAACCTGAGAGCTCAGAATCACAATCGTCACAGTTCGAGCCAAGATATACTATCGAAGAGTGTGTGTGCAAGATCCGAAATACATAGTCTTTGATAGCAATCTGAAGGAGTTGTTCAATGTCTGCCATGAGCCAGGATGTTGAGCAGGTGTCATCAGTTCAACCCTGAAAATAAATTGTTTTGCCATCACTATAGGGCCGGGAAGTGCTGGGGGGGTTGTTGATCCAGGTGAGCTGGCAGAATGGGCGGGCCGTCCTTGCTGGGTGGCCTGGCGTGGGACCGGGGGTGGCGGTGTAGGGAAAGGTGCCTGTATCCCCTCCCGCTGGTAGTAAAGGGGCTTGGCTGCAGGGAGGGGCTGGGCGTTGACCCTGGGGGGCAGGAGCGAGCCCCAATCCCTGCTGCAGCACCATCCTCTCCCTCTGACGCCAGGAGTACCTGAAACAGGGAGAGAAATCACCTATAGCATGCATTCTTGTCCCAGACAAGGTGTTGAGCTGCCTTATCCAGCCTATGTAGCGGTGATAACCAAAATAAAGAATTAGCCGATACACTAAAAAAAGGTAGATAACAAATATTCAGATTcataagtttaaaaaaatatgtttttgtttagtCTGTAGAGTTATAGACTACATTGATCACAGTCCCAAAACCTGCCCTGTAGAAAGCTCTATCCATCTTGAGTAATAAGATATTGGGAAACAGGCTCCCTGAGGATGTCCCAAACTTCCAACAAATGGTGTGCAGCAACCAATCAGAGATTAGTGGGCGTCACTGGGGGCGTTGACTCCCTGCTGTCACCTCAAGTATCTGCTGGTCCTCTCAAGTCTGAGTAGAAACTGACTTATGTGTGTTACAATTCTGTAAACAGTGTCTTTATTAACTGAGtagaaaatgactgatttacttTTTTAAATTTGTTGAACTTTTTATAAAGAGTGTATAAAATTAAAGGAGAAAGtgcttttataaaaaaaaaaa
>TU875323
aacgcttgaatagaaacctagttcacgcccccgattttgaagtcaacacagtcgctacagtcccattagttttctttgcagcctcgtttcaatgttgcggttgcgcacatttttACGGAATGGTGTGTGAGTTTACGTTTATTGCGTCTGAAATGTTTTGTGTAACCCCCCGCCAGCGTTATCAAGTAACTCGACTGCACCTAAAATTGCAACACAGTTTCTCTGTGTAGCCCTGTATTAGGTAGTTACTCTGTAGCTGGCCACCTCAGTCAAGTAACGTCAACTAAATGTATTACAGTAACATTTGTTCTTTGAATGTTTTGTTAGCCCCACTTTATTTAGCTAGACTTTTTTCTttttactgtgttattgacttgttaattgtttactccatgtgtaactctgtgttgtctgttcacactgctatgctttatcttggccaggtcgcagttgcaaatgagaacttgttctcaactagcctacctggttaaataaagGGTGACATCTACATCCCTGAAAAAGGTTTTCATCCTGGAGGAGACTGCAGGAGGAGGCACAAGCAAATCCATGTTATTTATAAGGCTATTGTTTATTTCAAGACACAATCTGTCATCCCTGAGGCCATTTTGGACATAAAATGGACAATACACAGTGATTCTTGAATATACCTATAGCCTAATAGATGCCTTAATTGTTTTCTACCAACAGGAAAGAACGGTTAGTACAGCATGCCAAACTGACCCCTGGGTGCCAGAGTGTTCCTGTGCTGTGGTGAAGAGGTCCACCGGGACCATCACGAAAGAGCTCGGGGCCCAGCTAGATTACGACGAATACCATCAGTATACTACTGAGTCCTGCCCCTATACGCCACAGATGGAGCTGACGGAGAGTGAGATCAGTGAAGACCAGAACTCGCTGTGAGAACCTGAGAGCTCAGAATCACAATCGTCACAGTTCGAGCCAAGATATACTATCGAAGAGTGTGTGTGCAAGATCCGAAATACATAGTCTTTGATAGCAATCTGAAGGAGTTGTTCAATGTCTGCCATGAGCCAGGATGTTGAGCAGGTGTCATCAGTTCAACCCTGAAAATAAATTGTTTTGCCATCACTATAGGGCCGGGAAGTGCTGGGGGGGTTGTTGATCCAGGTGAGCTGGCAGAATGGGCGGGCCGTCCTTGCTGGGTGGCCTGGCGTGGGACCGGGGGTGGCGGTGTAGGGAAAGGTGCCTGTATCCCCTCCCGCTGGTAGTAAAGGGGCTTGGCTGCAGGGAGGGGCTGGGCGTTGACCCTGGGGGGCAGGAGCGAGCCCCAATCCCTGCTGCAGCACCATCCTCTCCCTCTGACGCCAGGAGTACCTGAAACAGGGAGAGAAATCACCTATAGCATGCATTCTTGTCCCAGACAAGGTGTTGAGCTGCCTTATCCAGCCTATGTAGCGGTGATAACCAAAATAAAGAATTAGCCGATACACTAAAAAAAGGTAGATAACAAATATTCAGATTcataagtttaaaaaaatatgtttttgtttagtCTGTAGAGTTATAGACTACATTGATCACAGTCCCAAAACCTGCCC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106565277 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053161.1 False 1447 mRNA 0.45 2 8318999 8320554
TU875323 True 1580 lncRNA 0.46 2 8319321 8321009

Neighbor

gene id symbol gene type direction distance location
LOC110531370 LOC106578104 coding downstream 9085 8301701 ~ 8309914 (-)
LOC110531374 LOC106578102 coding downstream 23645 8291241 ~ 8295354 (-)
LOC110531375 LOC106578102 coding downstream 30403 8284078 ~ 8288596 (-)
LOC110531377 LOC106578102 coding downstream 35640 8277882 ~ 8283359 (-)
krcp LOC106578101 coding downstream 52401 8254795 ~ 8266598 (-)
LOC110531383 LOC106578065 coding upstream 3671 8324225 ~ 8330124 (-)
LOC110531384 LOC106578065 coding upstream 20225 8340779 ~ 8343063 (-)
LOC110531390 LOC106578068 coding upstream 36027 8356581 ~ 8400668 (-)
LOC118936450 LOC106578067 coding upstream 97611 8418165 ~ 8422251 (-)
LOC110531388 LOC106578104 coding upstream 116624 8437178 ~ 8443098 (-)
G768425 NA non-coding downstream 42514 8276173 ~ 8276485 (-)
G768414 NA non-coding downstream 71589 8240270 ~ 8247410 (-)
G768407 NA non-coding downstream 93946 8223935 ~ 8225053 (-)
G768406 NA non-coding downstream 95428 8222864 ~ 8223571 (-)
G768402 NA non-coding downstream 97722 8220971 ~ 8221277 (-)
G768483 NA non-coding upstream 37701 8358255 ~ 8365890 (-)
G768504 NA non-coding upstream 87579 8408133 ~ 8408436 (-)
G768528 NA non-coding upstream 139281 8459835 ~ 8501302 (-)
G768554 NA non-coding upstream 168609 8489163 ~ 8489756 (-)
LOC118966156 NA non-coding upstream 211120 8530635 ~ 8533005 (-)
LOC118936684 LOC106578100 other downstream 66244 8221531 ~ 8253809 (-)
G768390 NA other downstream 127101 8189443 ~ 8191898 (-)
LOC110510419 LOC106560462 other downstream 204929 8112588 ~ 8155916 (-)
G767056 ovol1 other downstream 1067924 7245644 ~ 7251075 (-)
G768780 NA other upstream 661914 8982468 ~ 8990706 (-)
G770225 NA other upstream 2054155 10367459 ~ 10375854 (-)
G770549 NA other upstream 2651819 10972373 ~ 10974413 (-)
G770627 LOC106577876 other upstream 2787274 11107828 ~ 11108159 (-)
G771457 NA other upstream 3308062 11628616 ~ 11629588 (-)

Expression


Co-expression Network