LOC110531384 (LOC106578065)


Basic Information

Item Value
gene id LOC110531384
gene name LOC106578065
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 8340779 ~ 8343063 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614574.2
CTTTTCTGAAATTTCCTTGACTAGAACACGGAAGTAGGATTGGAAACGATTCTGTTTTGATTTTGCATTCATTGCGTGGAGTAACAAAATATCCACTAACTGAACTGAATAAGATACCCGAATCTAATTCGACTGAAAATGTCTAAACTACAGTTGTTGCGTGTGTTTTTAAATGATCGTTTAACGGCGGCTGCTGTGGAGATTTTCGGGGCAGTTGAGAAAACGGTAGTGGAGTACCAGGAGGAGAATGATCGGCTACGGAGACTGCTGCGGAGGACACCAGAGATGCAACTATGTAAAATAGactccctgcagctctctgtctctgctgagGAGGTTCCCCCTGAGCAGCAGCACTGTGAGCAGGAATGGAGCCCCAGTTTGGGGCAGGAGGATCCAGATACCACACTGATTAAAGGGAAACAGGAGGAAGAACAGCTTCAAGGTCTGGAGCCTGATATCATAGAGTTCATATTCACTCCTTCCTGTGTGAAAAGTGAATGTGATCAGGAGCAACCACTTCAGTCCTTGACTCTTCCCCAAACCAAGActgtggagaacagagagagtgatTCTAAACCAGTGGATCTGAAACCTTTTGGCACTGTGACCCACATTAATGGTCTTTACATTCCCTGTTTATCGCCATATACTCAGAACAATGCCTCCAGCCACAGCTCAGCCATAAGCAGCGACCCAGTAGGACTTGACAGCAGCCCACCATTGGATCCCACCCCACCATTAGATCCAAACACGTCAATGGGGGAACGCGGTTCCAAACCCAGCACCACGTCTAGAAAAACTCACCACTGCCATGACTATGGTGAAATGTTTCCTCTGAAAGCTGACCTGCAGAGGCACGTGACTCTTACCAAGAAGAGACTCAGCGAATGTCACTTATCCAATAAACAGTACAACTCCACCTGTAAACCGGAAGCCCATGTCCAACTCTGTCCCATGGAGAAATCCTGCACTTGCCCTATTTGTGGCATGACCATCAAACACAAGGGAGATCTGTCCAGGCACATGGgtattcacacaggagagaaaccatttagctgtgtTGTCTGTGGGAAAAGCTTCTATCAGAAGGGACACCTTACAGATCATAAacggactcacacaggagagaaaccatttagctgtggtgactgtgggaaaagcttcaatTTGAAGGGAAACCTAAGGAAGCATAaactgactcacacaggagagaaaccatttagctgtggaGACTGTGGGAGAAGCTTCAGTCTCAATATGAACTTAACCAGGCATAAACTgacccacacaggagagaaaccatttagctgtggtgactgtgggaaaagtTTTACTCAAAAGACTAACCTGCTGATGCATGTGAAAAACATCCACAAAGGAGGAAAGCAGGACAAAAACTGAAAGAAAGAAAATGAGGACAAAGCTGTTCTGTCAAAAGAATGAGAAAAACGGGCAGTATGTGGACAACACGTTTTAAGTAGGGctggtatatatatattttatggaTGATATTTGaaggtattttatgtttttgaatagTTAAAATTCTACATTTGCTTCATGAGTAGTGCATGACCCTAAGATGGCaacatatacagtatcagtcaagtttggacacacctactcattcaagggtttttctttattttctaccttgtaagagtgtgcaaagctgtgatcaaggcaaagggaggctactttgaagaatctaaaatatattttggtttgttttagcactttttttttggttactacatgattactgTATATAAGTGTGTTCGCTAGCACGCACCGATGTAATGGTCACACAAGCTCACTACTGACACAGTTTTCATACTACAGATTTTACCATCATCAACCATCAACATCGTTAAGCTCTGCACAACTAACATTGCTGTTTCCTTTTTAACTACAGATAATAAATAatgctcaactggga

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K02215 CF2; chorion factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614574.2 True 1942 mRNA 0.43 2 8340779 8343063

Neighbor

gene id symbol gene type direction distance location
LOC110531383 LOC106578065 coding downstream 10655 8324225 ~ 8330124 (-)
LOC118965987 NA coding downstream 20225 8318999 ~ 8321009 (-)
LOC110531370 LOC106578104 coding downstream 30865 8301701 ~ 8309914 (-)
LOC110531374 LOC106578102 coding downstream 45425 8291241 ~ 8295354 (-)
LOC110531375 LOC106578102 coding downstream 52183 8284078 ~ 8288596 (-)
LOC110531390 LOC106578068 coding upstream 13518 8356581 ~ 8400668 (-)
LOC118936450 LOC106578067 coding upstream 75102 8418165 ~ 8422251 (-)
LOC110531388 LOC106578104 coding upstream 94115 8437178 ~ 8443098 (-)
LOC110531389 LOC106578069 coding upstream 107024 8450087 ~ 8457581 (-)
hspa12b LOC106578073 coding upstream 146924 8489987 ~ 8533713 (-)
G768425 NA non-coding downstream 64294 8276173 ~ 8276485 (-)
G768414 NA non-coding downstream 93369 8240270 ~ 8247410 (-)
G768407 NA non-coding downstream 115726 8223935 ~ 8225053 (-)
G768406 NA non-coding downstream 117208 8222864 ~ 8223571 (-)
G768483 NA non-coding upstream 15192 8358255 ~ 8365890 (-)
G768504 NA non-coding upstream 65070 8408133 ~ 8408436 (-)
G768528 NA non-coding upstream 116772 8459835 ~ 8501302 (-)
G768554 NA non-coding upstream 146100 8489163 ~ 8489756 (-)
LOC118966156 NA non-coding upstream 188611 8530635 ~ 8533005 (-)
LOC110531377 LOC106578102 other downstream 57455 8277882 ~ 8283359 (-)
LOC118936684 LOC106578100 other downstream 88024 8221531 ~ 8253809 (-)
G768390 NA other downstream 148881 8189443 ~ 8191898 (-)
LOC110510419 LOC106560462 other downstream 226709 8112588 ~ 8155916 (-)
G767056 ovol1 other downstream 1089704 7245644 ~ 7251075 (-)
G768780 NA other upstream 639405 8982468 ~ 8990706 (-)
G770225 NA other upstream 2031646 10367459 ~ 10375854 (-)
G770549 NA other upstream 2629310 10972373 ~ 10974413 (-)
G770627 LOC106577876 other upstream 2764765 11107828 ~ 11108159 (-)
G771457 NA other upstream 3285553 11628616 ~ 11629588 (-)

Expression


Co-expression Network