LOC110531390 (LOC106578068)


Basic Information

Item Value
gene id LOC110531390
gene name LOC106578068
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 8356581 ~ 8400668 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053159.1
ttgtacctacaCATCcagcatggtggcaacacagtaaagaggctcagagagaatgccaccgaatcCATTGTTCACAGCCTCTAGTAGAGTATTTTTCCAAATTTTAACCCCACGGTCTGTGTTGGCAGTTTTGTTGAGCGGGCATTTCAATACCATGAccgagggtatcacgtctgctgcagaggcagttgatgagcttatttctccagtcagttgttTCGAATGGAGCTAGAAGTGTGTTcctgtttcaaacatgttctcaaatgccattgaaatggcagcagcggtatgacaACCAGCACATTCTTTAAGCATGCAATACgactttcctcagtacgaaatcctcatcgactcactgtgctgtcagactcggcATGCTCATGGGACTGagatcgctggtccaaatgtcagtcgtgaagctaatagtagtgacgcccatagcaagtagctcataGATGTACGTTTCACAaaactgtgtaactccggtagggcaacatctgaaagaTGGCGAGTACCGGGGCTCAACCAGTCGGGgaaaagccaacatcatccacgacagaaAACGATtcattgtcaagggcaatgaataccattatcttggcgttaacgGATTTCACCTTTTGAGtcgtctcgctgaaatgttcttactctttcaaatgactgctggacttgaacttgtttagttgttggaagtgtgcGCTTAGTATTGTTCTGCGTTTGTTCTGTGTAGCGCTGTATTTTTTCGTGGTGTCATATCAGCTACCTATGTAATATTAGGTATTCACGTCAGCGTTGACATCGGTTTTACACATCGGCgataaactagacatcgggccgatgttGGCCTTTTTAGCTAATATTGGCTTGTGTGGCGTAAATAAAGACCCACTGACCAACTAGTAGGCAACCCAACGCTCATTCGACGAAAAATGGCTAAGCCTACAATTGTTGCGTGTGTTTTTAAATTAGCGTTTATCGGCGGCTGCTGTGGAGATTTTCGGGGCAGTTGAGAAAACGGTAGTGGAGTACCAGGAGGAGAATGATCGGCTACGGAGACTGCTGGGGATCACACCGGAGATACAACTATGTAGAATAGacTCCCTGCAGCTCTCTGTCCCTGAAGAGGAGGTTCCCCCTGAGCAGCAGCACTGTGAGCAGGAGTGGAGCCCCAGTCTGGGGCAGAAGGACCCAGAGACCACACAGAT
>XR_005053160.1
GTTTAACGGCGGCTGCTGTGGAGATTTTCGGTGCAGTTGAGAAAACGGTGGTGGAGTACCAGGAGGAGAATGATCGGCTACGGAGACTGCTGCGGAATCGAATCACACCGGAGattaaactatgtagaatagacTCCCTGCAGCTCTCTGTCCCTGAAGAGGAGGTTCCCCCTG
>XM_036987242.1
TAGAACACGGAAGTAGAATTAGAAACGAGTTTGTTTTGGCAATCATTTAGTGGAGTAAAAATAAGACATACTGACTGAACTAAATAGGCCACCCAACTCTCATTCGACTGAAAATGTCTAAACTACAGTTGTTGCGTTTGTTTTTAAATGAGCGTTTAACGGCGGCTGCTGTGGAGATTTTCGGTGCAGTTGAGAAAACGGTGGTGGAGTACCAGGAGGAGAATGATCGGCTACGGAGACTGCTGCGGAATCGAATCACACCGGAGattaaactatgtagaatagactccctgcagctctctgtctctgaagaGGAGGTTCCCCCTGAGCAGCAGCACTGTGAGCAGGAGTGGAGCCCCAGTCTGGGGCAGGAGGACTCAGAGCCCACACTGATTAAAGAGGAAGAGGCGGAACTCAAGACCagtcaggaggaagagcagcttcaaGGGGTGGAGCCTCGGGGAAGGCACTTTGTGGCTGGGAAGCTGGTCTGGGTCTACAGCCCCCTAAGGAAATAAGGCAGATGCCCCAAGTTGGACAGTCACTGGGTGGGACCCTGCAGTGTCCTGGAGAGGGTAGGGGAGGTTGTTTACTGGGTGCAGCTTCCTCCCAGGGGGAGAAAGGTGACACTGCACCAGGACAGGTTAGCCCCATGCAGAGGGGCCTCTTCTCCCCAAACCCCAGGAACCCCCACAATTCCCCTCTCTGGCAATAACATTCTCCAGGCACCCACCCCCAGGTGCCGCAGACAAGGCTCCAGAGAGCccactccccctgtctccccccctgTGTCACCGTGTGGTTCCCCAGAGCCACGGACTGTATTCCCCGTTCCCCCTTCCTTGTCCCCCATATCCCTGCCTTCAACCCCTGGGTCCCAGAGGGGCACTCTGCGACCATCACGGCCACGCAGGCAAAGGAGACCTCCGGGTCGCTTCAGAGACTTTGTTCCCTCGGGGATGAGGGACTTTGTGGTGGGGGGGCTgtgtagcgacccgcacagacagctgtgtgttatgtgttaggctagtaggtggttgtgttgtacttaccagtacccagtATTCGCAGGGTCCGACAggccaatcaacctgctatctgccaatcacaggaatgtctggaatgttctgatgccgggtATCCTGGcggttggcggagtggcgtggaggggggttgggcagggggatggagcattggaagttaagaccaggtttagTCTTTGTTCTCTCTTACGTCTGGGCTTCACAGGAGAAGGTCACGATTGGCTTGTGGgttatctttcatttatttggcgtgggctacggccaaacagtagcctgtgtaaagttggtttaataaaccgtcaattcgtaaactcaatcctccgtctggacaattgttcctttatgatctagtcaggtcattacaatacattatattaAATACAATTCCAGAAAAAGACTCCTTGCATTTGTTCAAGAGTATTTCTCATCAATTCTGACCTGATGCTGCTCATtcgaccgactctcttctctgtatatatcaatgatgtcgcttttgctgctggtgagtctctgatccacctctacgcagacgacaccattctgtatacttctggcccttctttggacactgtgttaacaaccctccagacgagcttcaatgccatacaactctccttccgtggcctccagcaGCTCTCAAATAAAACTAAAACTAAAACACCCATGCTgacaaacatacccttgtaaaactgaccatcttgcCGATCCTCGAATTTGGCAATGACATTTAcagaatagcctccaacaccctactcaacaaattggatgcagtctatcacagtgccatccgttt
>XM_021614580.2
CTTGACTAGAACACGGAAGTAGAATTAGAAACGAGTTTGTTTTGGCAATCATTTAGTGGAGTAAAAATAAGACATACTGACTGAACTAAATAGGCCACCCAACTCTCATTCGACTGAAAATGTCTAAACTACAGTTGTTGCGTTTGTTTTTAAATGAGCGTTTAACGGCGGCTGCTGTGGAGATTTTCGGTGCAGTTGAGAAAACGGTGGTGGAGTACCAGGAGGAGAATGATCGGCTACGGAGACTGCTGCGGAATCGAATCACACCGGAGattaaactatgtagaatagactccctgcagctctctgtctctgaagaGGAGGTTCCCCCTGAGCAACAGCACTGTGAGCAGGAGTGGAGCCCCAGCCTGGGGCAGGAGGACCCAGAGCCCACACTGATTATAGACGAAGAGGAGGAAGTCAGGACCAGTCAGGAGGAAGAGCAGTTTCAAGGGCTGGAGCCTGATATAGAGTTCATATTCACTCCTTCCTGTGTGAAAAGTGAATGTGATCAGGAGGACCCACTTTGGTCCTTGACTCTTCCCCAAACCCAGactggagagaacagagagagtaatTCTAAACCAGTGGATCTCAAACCTTTTGGCACTGTGACCCACTTAAAGGGTCTTGACATTCCCTGTGACCTTCCATATAATCGTAACAATGCCTCCAGCCACAGCTCAGCCGTAAGCAGCGACCTAGTAGGGCTTGACATCAGCCCACCATTTGATCCCAACGCACCAATGGGGGAACCCTGCATCTGCCCCTTTTGTGGCAAGACCTTCAAACAAAAAGGAAATCTGTCCATGCACATGaagattcacacaggagagaaaccttttagctgtgGTGACTGCGGGAAACGCTTCAATCGCAAGGAGCACTTAACCAGACATATACGCATTCACAGAGGAGAGAAACCATTCAGCTGTCATTTTTGCTGTAAAAGCTTCAATCAGAAGGGGGATCTAAGGAGACACATcctgactcacacaggagagaaaccattcagctgtggtgactgtgggaaagGCTTCATTCGCAAGGAGCATCTAATTGCACATGTACGGACTCACACAGGAGAAGTGTCGGTGTCAAGCAGAGCCTAACCATGCAGAAACTGGCAAATAGATCTCTGATGGATTTACTGTCGTAAAAACATTGTatgtaaataaagtttgatttgaatgaTGAGGTAATGATCACACTAGGGGTGCACCGATATGAAattttttggccgataccgataacCAATATTACCATTTTTTTGCGgacttttaagcattctagtacagttaaagagttcacacacacacacacacacggactcagtggtctaaggcactgcatctct

Function

NR:

description
zinc finger protein 250-like isoform X1

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053159.1 False 1205 mRNA 0.47 2 8356581 8385968
XR_005053160.1 False 174 mRNA 0.53 2 8356648 8400509
XM_036987242.1 False 1836 mRNA 0.51 3 8367682 8400662
XM_021614580.2 True 1357 mRNA 0.46 2 8386478 8400668

Neighbor

gene id symbol gene type direction distance location
LOC110531384 LOC106578065 coding downstream 13518 8340779 ~ 8343063 (-)
LOC110531383 LOC106578065 coding downstream 26457 8324225 ~ 8330124 (-)
LOC118965987 NA coding downstream 36027 8318999 ~ 8321009 (-)
LOC110531370 LOC106578104 coding downstream 46667 8301701 ~ 8309914 (-)
LOC110531374 LOC106578102 coding downstream 61227 8291241 ~ 8295354 (-)
LOC118936450 LOC106578067 coding upstream 17497 8418165 ~ 8422251 (-)
LOC110531388 LOC106578104 coding upstream 36510 8437178 ~ 8443098 (-)
LOC110531389 LOC106578069 coding upstream 49419 8450087 ~ 8457581 (-)
hspa12b LOC106578073 coding upstream 89319 8489987 ~ 8533713 (-)
LOC118966156 NA coding upstream 129967 8530635 ~ 8533005 (-)
G768425 NA non-coding downstream 80096 8276173 ~ 8276485 (-)
G768414 NA non-coding downstream 109171 8240270 ~ 8247410 (-)
G768407 NA non-coding downstream 131528 8223935 ~ 8225053 (-)
G768406 NA non-coding downstream 133010 8222864 ~ 8223571 (-)
G768504 NA non-coding upstream 7465 8408133 ~ 8408436 (-)
G768528 NA non-coding upstream 59167 8459835 ~ 8501302 (-)
G768554 NA non-coding upstream 88495 8489163 ~ 8489756 (-)
G768591 NA non-coding upstream 174998 8575666 ~ 8575993 (-)
LOC110531377 LOC106578102 other downstream 73257 8277882 ~ 8283359 (-)
LOC118936684 LOC106578100 other downstream 103826 8221531 ~ 8253809 (-)
G768390 NA other downstream 164683 8189443 ~ 8191898 (-)
LOC110510419 LOC106560462 other downstream 242511 8112588 ~ 8155916 (-)
G767056 ovol1 other downstream 1105506 7245644 ~ 7251075 (-)
G768780 NA other upstream 581800 8982468 ~ 8990706 (-)
G770225 NA other upstream 1974041 10367459 ~ 10375854 (-)
G770549 NA other upstream 2571705 10972373 ~ 10974413 (-)
G770627 LOC106577876 other upstream 2707160 11107828 ~ 11108159 (-)
G771457 NA other upstream 3227948 11628616 ~ 11629588 (-)

Expression


Co-expression Network