XLOC_026592 (rab11fip4a)


Basic Information

Item Value
gene id XLOC_026592
gene name rab11fip4a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 36023268 ~ 36115354 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051805
GGCTGAGCTGCGCGCGAGCTGAGATGATGGCGAGCGCGCTCACAGCATCACCATCTCTCTAACACAGAGCATTCATCAGCGCAGCTTCTCAACGATGGACGGCAATGTCTTCCCCGACCAAGAACAGCTGCTGGCGTTCCTGAAGAAACTCAAAGAAGTGTTCGATGTGTGCGACGAGGATGCCGACGGATATATTCGGGTTGAGCACTTCGTGGACCTCGGTTTACAGTTCGGCCAAGGAGATGAAGTGAAGAAGTTTGCCAAGTACTTGGATCCCAACGCTCACGGCAGAATAAACTTCAAAGATTTCTGTCATGGAGTGTTTGCAATCAAAGGCTGTGAGGAGATCCTAAAATCGGCACTTGGGACCCCCACCATCGCAGCACAGCCGTACCAGACAGACAATGGCTACTACTATCAGCACCAGGAGGGGAGTCTGGGACCCCCCATCATTGTGTGCACACGTCCGTACCCAGAGTGCCAGCTGTACTCGGACGAGGAGGGAATGGGTGGACGGGACATGCAGGAGTCAGACATGGACAGTGCTGCGGACAGCGGAGCAGGATCTGAATCTTCTGAAGGAGGACGGCAGGATGACAAAGAAGAAGGACTGGGGGGATTCTTTTTACGTGGAAACAACTGTGGTCAGATGGTGTCGTCAGCTGCAGCCTCAGTAATCTCAGTGGAGGAGCAGTTTGAGGACTATGGAGAGGGAGAAGATGTGGACTTCACTCCCAGCAGCCCCATCCCAGATGATGATACTCGCACCAATGGTTTCTCTGACCTGGGCTCATCTCTACCATCCAGTGCTGGTCAAACCCCTCAGAAGATCCGACACCTGTACAACAGTGAGCTTCTGGATGTTTACTGCTCTCAGTGCTGCAAGAAAGTCAACCTGCTCAATGACCTGGAGGCCAGACTCAAGAACCTCAAAGCTAACAGCCCAAACAGGAAAATTTCCAGTACTGCTTTTGGCCGTCAACTCTTCCACCACAGTAACTTCAGCAGCAGTCAGGGCAGCACTGAAGACCTGTTCAGAGACAGCATTGACTCCTGCGACGTTGACATCACCGAGAAGGTGAGCTATTTAGAAAAGAAGATATCTGAGCTGGAGAACGACAGTCTGGCTAATGGAGATCTGAAATCAAAACTTAAACAAGAAAACACACAACTAGTTCACAGGGTACATGAGCTGGAGGAGCAGATCAAAGATCAGGAGACGCGTGCAGAGCAATGTTTGGAGGAGGAGCTGAAGAGACACAGAGAGGCCTACAGCAAGATGGAGAGAGACAAGAGCACTGAGATTGAACTGCTCAGTAACAGGGTCCAGCAGCTGGAAGAGGAGAATGCAGAGATGAAAGTGAATGTTTGCAGACTCAAGTCTCAGACTGAGAAACTGGACCAGGAGAAGCAACGTATGACGGATAAACTGGAGGACACAAGCCTGCGTTTGAAGGATGAGATGGATCTGTACAGGAAGATGATGGACAAACTTTGGCAGAACAGACATGAGTTTCAGAAGGAACGAGAGGCCATGCAAGAGCTGATTGAGGACCTGCGGCGTGAGCTGGAGCATCTACAGCTCTTTAAACTGGAGACAGAGAAGCCTGGACGTGGACGTACTGCTGCTGGACTGTCTGAATACAACGCCAAGACTCGAGAGATCGAACTGGAGCATGAAGTAAAAAGGCTTAAGCAGGAAAACCATAAACTCAGAGACCAGAACGATGATCTGAATGGACAGATTCTCAGCCTCAGCCTTTATGAGGCCAAAAACCTGTTCGCTTGTCACACCAAGGCCCAGTCGCTGGCGGCGGAGATCGATAACGCTTCAAGAGATGAGCTGGTTGACGCTTTGAAAGAACAAGAGGAGATCAACTTCCGTTTGCGGCAGTACATGGACAAAATCATCCTGGCCATCCTCGACCACAACCCCTCCATTTTAGAGATCAAGCATTAGACTGCAGAGCTGAGAGGACTCACCATTGGCAGAGAGCTCCCTCTTCAGGCCGGGAGTGAGAAATGTCCCTTCTTTGCCCTTTACACCAGTCCATCATGTATTCACAGGGCAAGTTTTACAGTACTGTCGAAATTATGGTGTCTATGTCTCTCACAAACAGGTTACAGTTTCCATCACCGCTCATGTCATCATGCTCTGTAGAAATGACAAGAAAATTTGATGAAACTGGAATCTAGAGTAGAAATGTACTTTTCACTCTAAGTTAAATACACACTAC
>TCONS_00051806
GAGCTGAGATGATGGCGAGCGCGCTCACAGCATCACCATCTCTCTAACACAGAGCATTCATCAGCGCAGCTTCTCAACGATGGACGGCAATGTCTTCCCCGACCAAGAACAGCTGCTGGCGTTCCTGAAGAAACTCAAAGAAGTGTTCGATGTGTGCGACGAGGATGCCGACGGATATATTCGGGTTGAGCACTTCGTGGACCTCGGTTTACAGTTCGGCCAAGGAGATGAAGTGAAGAAGTTTGCCAAGTACTTGGATCCCAACGCTCACGGCAGAATAAACTTCAAAGATTTCTGTCATGGAGTGTTTGCAATCAAAGGCTGTGAGGAGATCCTAAAATCGGCACTTGGGACCCCCACCATCGCAGCACAGCCGTACCAGACAGACAATGGCTACTACTATCAGCACCAGGAGGGGAGTCTGGGACCCCCCATCATTGTGTGCACACGTCCGTACCCAGAGTGCCAGCTGTACTCGGACGAGGAGGGAATGGGTGGACGGGACATGCAGGAGTCAGACATGGACAGTGCTGCGGACAGCGGAGCAGGATCTGAATCTTCTGAAGGAGGACGGCAGGATGACAAAGAAGAAGGACTGGGGGGATTCTTTTTACGTGGAAACAACTGTGGTCAGATGGTGTCGTCAGCTGCAGCCTCAGTAATCTCAGTGGAGGAGCAGTTTGAGGACTATGGAGAGGGAGAAGATGTGGACTTCACTCCCAGCAGCCCCATCCCAGATGATGATACTCGCACCAATGGTTTCTCTGACCTGGGCTCATCTCTACCATCCAGTGCTGGTCAAACCCCTCAGAAGATCCGACACCTGTACAACAGTGAGCTTCTGGATGTTTACTGCTCTCAGTGCTGCAAGAAAGTCAACCTGCTCAATGACCTGGAGGCCAGACTCAAGAACCTCAAAGCTAACAGGTACAAACAAGTCTAAAGCACGCCAAGCTTATGACTTAATACACGCATTGAGTGCTGCAGGGatggtttaaaatt
>TCONS_00051807
ACAGAGCATTCATCAGCGCAGCTTCTCAACGATGGACGGCAATGTCTTCCCCGACCAAGAACAGCTGCTGGCGTTCCTGAAGAAACTCAAAGAAGTGTTCGATGTGTGCGACGAGGATGCCGACGGATATATTCGGGTTGAGCACTTCGTGGACCTCGGTTTACAGTTCGGCCAAGGAGATGAAGTGAAGAAGTTTGCCAAGTACTTGGATCCCAACGCTCACGGCAGAATAAACTTCAAAGATTTCTGTCATGGAGTGTTTGCAATCAAAGGCTGTGAGGAGATCCTAAAATCGGCACTTGGGACCCCCACCATCGCAGCACAGCCGTACCAGACAGACAATGGCTACTACTATCAGGTAGGCACAAATTGGATActtgatattgttttttttgtttctgaCATATAGCCATTGGCTCTCCAATCATCATGAGAATAGGTTTGCTCTACTGAAAACACTTTGTCTTGAACTTTGTTGAGAACGTCTTGTTTGTCTTTATTTTGCTTGCACGTCGTGAACCTAAATTGCACCTACTGGATA

Function

symbol description
rab11fip4a Predicted to enable protein homodimerization activity and small GTPase binding activity. Acts upstream of or within eye morphogenesis and regulation of cell cycle. Predicted to be located in endosome. Predicted to be active in cleavage furrow; cytoplasmic vesicle; and midbody. Predicted to colocalize with centrosome. Is expressed in several structures, including immature eye; nervous system; optic primordium; otic vesicle; and pleuroperitoneal region. Orthologous to human RAB11FIP4 (RAB11 family interacting protein 4).

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0048592 eye morphogenesis biological_process
GO:0007049 cell cycle biological_process
GO:0032456 endocytic recycling biological_process
GO:0032465 regulation of cytokinesis biological_process
GO:0051301 cell division biological_process
GO:0005768 endosome cellular_component
GO:0030139 endocytic vesicle cellular_component
GO:0005813 centrosome cellular_component
GO:0055038 recycling endosome membrane cellular_component
GO:0030496 midbody cellular_component
GO:0032154 cleavage furrow cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0042803 protein homodimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-266 Predicted to enable protein homodimerization activity and small GTPase binding activity. Acts upstream of or within eye morphogenesis and regulation of cell cycle. Predicted to be located in endosome. Predicted to be active in cleavage furrow; cytoplasmic vesicle; and midbody. Predicted to colocalize with centrosome. Is expressed in several structures, including immature eye; nervous system; optic primordium; otic vesicle; and pleuroperitoneal region. Orthologous to human RAB11FIP4 (RAB11 family interacting protein 4).

Ensembl:

ensembl_id ENSDARG00000090170

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051805 False 2237 mRNA 0.50 15 36023268 36115354
TCONS_00051806 False 1002 mRNA 0.52 6 36038482 36115339
TCONS_00051807 True 541 lncRNA 0.46 3 36093640 36115291

Neighbor

gene id symbol gene type direction distance location
XLOC_026591 suz12a coding downstream 158228 35849392 ~ 35865040 (-)
XLOC_026590 caskin1 coding downstream 222122 35632773 ~ 35801146 (-)
XLOC_026589 gng13b coding downstream 421035 35589212 ~ 35602233 (-)
XLOC_026588 NA coding downstream 448817 35565128 ~ 35574451 (-)
XLOC_026587 dctn5 coding downstream 468459 35550870 ~ 35554809 (-)
XLOC_026593 coil coding upstream 4428 36119782 ~ 36127234 (-)
XLOC_026594 engase coding upstream 21176 36136530 ~ 36153591 (-)
XLOC_026595 BX897685.1 coding upstream 55589 36170943 ~ 36171968 (-)
XLOC_026596 csnk1da coding upstream 57849 36173203 ~ 36210344 (-)
XLOC_026597 gps1 coding upstream 118706 36234060 ~ 36246975 (-)
XLOC_026585 NA non-coding downstream 1075207 34947402 ~ 34948061 (-)
XLOC_026580 NA non-coding downstream 1381295 34641048 ~ 34641973 (-)
XLOC_026572 NA non-coding downstream 1882087 34139637 ~ 34141181 (-)
XLOC_026558 BX649502.11 non-coding downstream 1936785 34086041 ~ 34086483 (-)
XLOC_026600 NA non-coding upstream 204885 36320239 ~ 36323625 (-)
XLOC_026606 NA non-coding upstream 467746 36583100 ~ 36587136 (-)
XLOC_026612 FO744883.1 non-coding upstream 640679 36756033 ~ 36756149 (-)
XLOC_026617 NA non-coding upstream 838271 36953625 ~ 36954088 (-)
XLOC_026618 CT573704.1 non-coding upstream 852517 36967871 ~ 36967993 (-)

Expression


Co-expression Network