LOC118936450 (LOC106578067)


Basic Information

Item Value
gene id LOC118936450
gene name LOC106578067
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 8418165 ~ 8422251 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987237.1
AAAAATCCTTGACTTAAACACGGAAGTAGGATTGGAAACGAGTTTACATTACAAACACATACTGACTGAACTGAATAGGCTACACAAAGCTAATTTGTCTGAAAATGTCTGAACTACAATTGTTGCGTGTGTTTTTGAATGATCGTTTAACGGCGGCTGCTGTGGAGATTTTCGGGGCAGTTGAGAAAACGGTAGTGGAGTACCAGGAGGAGAATGATCGGCTACGGAGAATGCTGCGGATCACACCGGAGATACAACTATGTAAAATAGacTCACTgcagctgtctgtctctgtctctgaagaGGACGTTCCCCCTGAGCAGCAGCATTGTGAGCAGGAATGGAGCCCCAGTCTGGGACAGAAGGACCCAGAGATCACACTGATTAAAGAAGAACAGGACGAACTCAGGACCAGTGAGGAGGAAGAACAGCTTCAAGGACTCTTTGATACGAATTACTCCATATTCACTACTTCCTGTTTGAAAAATGAATGTGATCAGAAGGACCCACTTCCGTCCTTGACTCTTCCCCAAAACCAGACTGTGGATAACAGAGAGCGTGAATCTGAACCAGTGGATCCTAAACCTTTTGGCACTGTGACCCACCTAAGGGGTCTGGACATTCCCTGTTACCCTCCAGATAATCAGAACAATGCCTCCAGCCACAGTACAGCCATAAGCAGCGACCCAGTAGAACTTGACAGTAGTCTACCATTTGATCTCAACCCACCATTCGGGGAACTCTCTTCCAAACTCAGCACCACATCTAGAATAACTCACCACTGCCGTGACTGTGGTGAAATGTTTGCTCTGAAAGCTGACCTGCAGAGACATGTGACTCTCCCCAAGAAGAGACCCTGCGAATGCAGCTTCTGCAAAAAACGCTACAACTCCACCTGTAAACTGAAGGCCCATGTCCGACTCTGTCATGGTGGTAAACTCTGCACATGCCCCTTTTGTGGCAAGATCTTCAAACAAAAAGGACATCTGTCCACTCACatgagaatccacacaggagagaaaccatttacCTGTGGTTACTGTGGGAAGAGCTTTATTCAGAAGGGGGACCTAAGGAGGCATATACTGACTCACACAGGAaagaaaccatttagctgtggttACTGTGGTAAAGGCTTCATTCGCAAAGAGCACCTAACTGCACATGTACGGACTCACACTGGAGAGTAATCATATGGCTACTTACATGGTCTGTGGTAGAAAATATTAATTCAGAAGGTAAACCTGCTGACGCATGTGAAAAACAATGAAAACGCAAAGGAGAAAGAAAATTAGGACAAAGATCTCCTATCAGAAGATGGGGATTAAAATGGAGGATGTGAACAACACTCTTAGGAAAGCAAAGAAAGACAGGACAAAGATCTCCTATCAGAAGATGAGGAATAAAAATGGAGGATGTGAACAACACTCTTAGAAAAGCAAAGCTACTCTGGATCATTCCTGCTGTGGGTTTCAGATAAATAGATACGTGATGGATTTACTTTAGTAAAATGTTTTGTGTAAATAAAGTTTGATGTCAATTAAAACATTTGATAATGAACAAACCGTAGTGCCTGTATTATGGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987237.1 True 1585 mRNA 0.44 2 8418165 8422251

Neighbor

gene id symbol gene type direction distance location
LOC110531390 LOC106578068 coding downstream 17497 8356581 ~ 8400668 (-)
LOC110531384 LOC106578065 coding downstream 75102 8340779 ~ 8343063 (-)
LOC110531383 LOC106578065 coding downstream 88041 8324225 ~ 8330124 (-)
LOC118965987 NA coding downstream 97611 8318999 ~ 8321009 (-)
LOC110531370 LOC106578104 coding downstream 108251 8301701 ~ 8309914 (-)
LOC110531388 LOC106578104 coding upstream 14927 8437178 ~ 8443098 (-)
LOC110531389 LOC106578069 coding upstream 27836 8450087 ~ 8457581 (-)
hspa12b LOC106578073 coding upstream 67736 8489987 ~ 8533713 (-)
LOC118966156 NA coding upstream 108384 8530635 ~ 8533005 (-)
nagk nagk coding upstream 144305 8566556 ~ 8580576 (-)
G768504 NA non-coding downstream 9729 8408133 ~ 8408436 (-)
G768483 NA non-coding downstream 52275 8358255 ~ 8365890 (-)
G768425 NA non-coding downstream 141680 8276173 ~ 8276485 (-)
G768414 NA non-coding downstream 170755 8240270 ~ 8247410 (-)
G768528 NA non-coding upstream 37584 8459835 ~ 8501302 (-)
G768554 NA non-coding upstream 66912 8489163 ~ 8489756 (-)
G768591 NA non-coding upstream 153415 8575666 ~ 8575993 (-)
G768610 NA non-coding upstream 208365 8630616 ~ 8726033 (-)
LOC110531377 LOC106578102 other downstream 134841 8277882 ~ 8283359 (-)
LOC118936684 LOC106578100 other downstream 165410 8221531 ~ 8253809 (-)
G768390 NA other downstream 226267 8189443 ~ 8191898 (-)
LOC110510419 LOC106560462 other downstream 304095 8112588 ~ 8155916 (-)
G767056 ovol1 other downstream 1167090 7245644 ~ 7251075 (-)
G768780 NA other upstream 560217 8982468 ~ 8990706 (-)
G770225 NA other upstream 1952458 10367459 ~ 10375854 (-)
G770549 NA other upstream 2550122 10972373 ~ 10974413 (-)
G770627 LOC106577876 other upstream 2685577 11107828 ~ 11108159 (-)
G771457 NA other upstream 3206365 11628616 ~ 11629588 (-)

Expression


Co-expression Network