LOC110531389 (LOC106578069)


Basic Information

Item Value
gene id LOC110531389
gene name LOC106578069
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 8450087 ~ 8457581 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987241.1
ATTCGTCACTGGTTCATCCCGTGATGATTGTGTTTTCATCCACCGGTAGcatgtgggtgctttatatgcgctaGTCAATTGAGTGAATGTCTACttattaaatacagaaatattaatATACgcatactgtatgatagctagcaaatgaaTTAGATAACTAGCTAGAACTTCTGAAGGAAAATGtgtatttctacaatttccaaaagataaCCAAACAAAACATTGACTTTTTTACGAGGTGtgtttgtgccgtcatgtgcattagtagcacaatttcaaACCAATttgcatttgtttttatttacacTTGTACGTTAACTTAAAAACAACGGAGAAGTTTTCGCTGACCgttcttagcggatgtacaatcgtCGCCAAATTGAATTATGGCGAGTTTCAGGCCCtggagtgaacataattgtacacacGCAAACTCGACTAAAAAAAGACAACTAAGGGGCTtacgttgcaaacttcccttgcttggctaatgaTTTGGACCACCCGCCAAGATGGCGatggggattcccccaagggcataaggccCTTGGGATGATGGACTCCCTGCAGATCTCTGTCTCTGAAGAGGAGGTTCCTCCTGAGCAGCAGCACTGTGAGCAGGAGTGGAGCCCCAGTCGGGGGCAGGAGGACCCAGAGACCACACAGATTAAAGAGAAACAGGAGGAAGTCAGGACCagtcaggaggaagagcagcttcaaGGTCTGGAGCCTGATATCATAGAGTTCGATTTCACTCCTTCAGGTGTGAAAAGTGAATGTGATCAGGAGGACCCACTTTGGTCCTTGACTCTTCCCCAAACCCAGACtgtgaaggacagagagggagactcTAAACCAGTAGATCGCAAACCTTTTGTCACCGTGAACCACCTAAAGTGTCTTGACATTCCCTGTGATCCTCCAGATAATCAGAACATTGCCTGCAGCCACAGCTCTGCTGTAAGCAGAAACCCAGTAGGACTTGACAGCAGCCCACCATTGGATCTGAACACAATAATGGGGGAAACCTGCACATGGCCCTTTTGTGGCAAGACCTTCAAACAAAAAGGACATCTGTCCAGGCACATGAgggttcacacaggagagaaaccttttagctgtggtgactgtggaaAAAGCTTCAGTCAGAAGGGGACCCTAACCATGCATAaactgactcacacaggagagaaaccgtttAGATGTTTTTTTTGCAGTAAAAGCTTCAGCCAGAAAGGGGACCTAATGAGACACATACTGACTCACACgggagagaaaccatttagctgtggtgactgCGGTAAAGGCTTCATTCGCAAGGAGCACCTAACTGCACATTTACAGACTCACACAGGAGAAGTGTCGGTCTCAAGCAGAACCTAACCATGCAGAAACTGATATAGATCTGAAACTGTCTAAACCGtttagctgtggtgactgtgggaaaagcttcgGTGTCAAGGGGAACCTAACTGTTGACATAGAGACACAGGATGATACACTTCTATttgtggtgactgtgggaaagGCTTCAATCATAAGATGGACCTAAGGAGGCATAAACTGACTTACAGtgaatttggaaagtattcagaccccttgactttttccacattttcttacattacaaccttattctagatttgattaaataaaaaaatgccctcagcaatctacacacaataactcatATTGACAGTGAAAACAGTTTATCAATTTTTTtcacatattttttaaatatttttaaataacttatttacataaagtattcagaccctttgctatatgATTATAAAATTGAGTTTgggtgcatcctttttccaatgatcatccttgatgtttctgcaacttgattggagtccacctttggaAAATTCCGTTGACAAGACATGTTCTGTCAGCTGATGAGGAATATGCAAGGATGTGGACACCTCGTAGGAAAGGAGGATCATTCACACTGAGGGTTTCAGATAAAGGTATATATAAAAGCACGTTGTGTTTTTCAACATTTTATgtgaataaagtttgatttgattcaattGATGATGTAATGATTAAACAGTGAATGGTAGGAATGTAGGAAGCTCACAGGTCTGCTGTTCTGTCTGATGTTTTCACGTTATTAAAAACAGGAATTCCTGGGCCTTTCGATTTAGAATGTCTCCCAGCTGATGAGAGAGTGGTTATTGATACATGGAAAAAATATTTACTTTCCAGAATATATCTTCCTTCCATCGGTCCAAAAGTATTTCTCATCCATTTTGACCTAATGCTGCTTATTCATGATATTGTTTTGAATCTTTTGGGAAGTAATGATTTATAATCGACACCTCGTAAGTACACTTTGTAGAAGTGCAAACTCGGTTTTAAGTATACTACAGTGTTTTTCAGTCCCAACTCAATAAAATTATTTGTAAAATCTCCTTATTACTGCATTCTTTAGTTtagcgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttca
>XM_036987240.1
AATTCGTCACTGGTTCATCCCGTGATGATTGTGTTTTCATCCACCGGTAGcatgtgggtgctttatatgcgctaGTCAATTGAGTGAATGTCTACttattaaatacagaaatattaatATACgcatactgtatgatagctagcaaatgaaTTAGATAACTAGCTAGAACTTCTGAAGGAAAATGtgtatttctacaatttccaaaagataaCCAAACAAAACATTGACTTTTTTACGAGGTGtgtttgtgccgtcatgtgcattagtagcacaatttcaaACCAATttgcatttgtttttatttacacTTGTACGTTAACTTAAAAACAACGGAGAAGTTTTCGCTGACCgttcttagcggatgtacaatcgtCGCCAAATTGAATTATGGCGAGTTTCAGGCCCtggagtgaacataattgtacacacGCAAACTCGACTAAAAAAAGACAACTAAGGGGCTtacgttgcaaacttcccttgcttggctaatgaTTTGGACCACCCGCCAAGATGGCGatggggattcccccaagggcataaggccCTTGGGATGATGGACTACTCCCTGCAGATCTCTGTCTCTGAAGAGGAGGTTCCTCCTGAGCAGCAGCACTGTGAGCAGGAGTGGAGCCCCAGTCGGGGGCAGGAGGACCCAGAGACCACACAGATTAAAGAGAAACAGGAGGAAGTCAGGACCagtcaggaggaagagcagcttcaaGGTCTGGAGCCTGATATCATAGAGTTCGATTTCACTCCTTCAGGTGTGAAAAGTGAATGTGATCAGGAGGACCCACTTTGGTCCTTGACTCTTCCCCAAACCCAGACtgtgaaggacagagagggagactcTAAACCAGTAGATCGCAAACCTTTTGTCACCGTGAACCACCTAAAGTGTCTTGACATTCCCTGTGATCCTCCAGATAATCAGAACATTGCCTGCAGCCACAGCTCTGCTGTAAGCAGAAACCCAGTAGGACTTGACAGCAGCCCACCATTGGATCTGAACACAATAATGGGGGAAACCTGCACATGGCCCTTTTGTGGCAAGACCTTCAAACAAAAAGGACATCTGTCCAGGCACATGAgggttcacacaggagagaaaccttttagctgtggtgactgtggaaAAAGCTTCAGTCAGAAGGGGACCCTAACCATGCATAaactgactcacacaggagagaaaccgtttAGATGTTTTTTTTGCAGTAAAAGCTTCAGCCAGAAAGGGGACCTAATGAGACACATACTGACTCACACgggagagaaaccatttagctgtggtgactgCGGTAAAGGCTTCATTCGCAAGGAGCACCTAACTGCACATTTACAGACTCACACAGGAGAAGTGTCGGTCTCAAGCAGAACCTAACCATGCAGAAACTGATATAGATCTGAAACTGTCTAAACCGtttagctgtggtgactgtgggaaaagcttcgGTGTCAAGGGGAACCTAACTGTTGACATAGAGACACAGGATGATACACTTCTATttgtggtgactgtgggaaagGCTTCAATCATAAGATGGACCTAAGGAGGCATAAACTGACTTACAGtgaatttggaaagtattcagaccccttgactttttccacattttcttacattacaaccttattctagatttgattaaataaaaaaatgccctcagcaatctacacacaataactcatATTGACAGTGAAAACAGTTTATCAATTTTTTtcacatattttttaaatatttttaaataacttatttacataaagtattcagaccctttgctatatgATTATAAAATTGAGTTTgggtgcatcctttttccaatgatcatccttgatgtttctgcaacttgattggagtccacctttggaAAATTCCGTTGACAAGACATGTTCTGTCAGCTGATGAGGAATATGCAAGGATGTGGACACCTCGTAGGAAAGGAGGATCATTCACACTGAGGGTTTCAGATAAAGGTATATATAAAAGCACGTTGTGTTTTTCAACATTTTATgtgaataaagtttgatttgattcaattGATGATGTAATGATTAAACAGTGAATGGTAGGAATGTAGGAAGCTCACAGGTCTGCTGTTCTGTCTGATGTTTTCACGTTATTAAAAACAGGAATTCCTGGGCCTTTCGATTTAGAATGTCTCCCAGCTGATGAGAGAGTGGTTATTGATACATGGAAAAAATATTTACTTTCCAGAATATATCTTCCTTCCATCGGTCCAAAAGTATTTCTCATCCATTTTGACCTAATGCTGCTTATTCATGATATTGTTTTGAATCTTTTGGGAAGTAATGATTTATAATCGACACCTCGTAAGTACACTTTGTAGAAGTGCAAACTCGGTTTTAAGTATACTACAGTGTTTTTCAGTCCCAACTCAATAAAATTATTTGTAAAATCTCCTTATTACTGCATTCTTTAGTTtagcgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttca
>XM_021614579.2
AATAAAATGCATTTTCTAAAATTCCTAGACTAGAGCACGGAAGTAGGATTGGAGACGACTTGTTTTTATTTTCAACGTTCCCTGTGTGTAGTAAAGAAAGACCCACTGACAATACTAAATAGGCTACCCAACTCTCATTCGACTGACAATGACTAAACTACAGTTGTTGAGTGTGTTTCTAAATGAGCGCTTAACGGCGGCTGTTGTGGAGATTGTCGGGGCAGTTGAGAAAACGGTAGTGGAGTACCAGGAGGAGAATGATCGGCTACGGAGACTGCTGCGGATCACACCAGAGATACCACTAACGTTATCGAGAATAGACTCCCTGCAGATCTCTGTCTCTGAAGAGGAGGTTCCTCCTGAGCAGCAGCACTGTGAGCAGGAGTGGAGCCCCAGTCGGGGGCAGGAGGACCCAGAGACCACACAGATTAAAGAGAAACAGGAGGAAGTCAGGACCagtcaggaggaagagcagcttcaaGGTCTGGAGCCTGATATCATAGAGTTCGATTTCACTCCTTCAGGTGTGAAAAGTGAATGTGATCAGGAGGACCCACTTTGGTCCTTGACTCTTCCCCAAACCCAGACtgtgaaggacagagagggagactcTAAACCAGTAGATCGCAAACCTTTTGTCACCGTGAACCACCTAAAGTGTCTTGACATTCCCTGTGATCCTCCAGATAATCAGAACATTGCCTGCAGCCACAGCTCTGCTGTAAGCAGAAACCCAGTAGGACTTGACAGCAGCCCACCATTGGATCTGAACACAATAATGGGGGAAACCTGCACATGGCCCTTTTGTGGCAAGACCTTCAAACAAAAAGGACATCTGTCCAGGCACATGAgggttcacacaggagagaaaccttttagctgtggtgactgtggaaAAAGCTTCAGTCAGAAGGGGACCCTAACCATGCATAaactgactcacacaggagagaaaccgtttAGATGTTTTTTTTGCAGTAAAAGCTTCAGCCAGAAAGGGGACCTAATGAGACACATACTGACTCACACgggagagaaaccatttagctgtggtgactgCGGTAAAGGCTTCATTCGCAAGGAGCACCTAACTGCACATTTACAGACTCACACAGGAGAAGTGTCGGTCTCAAGCAGAACCTAACCATGCAGAAACTGATATAGATCTGAAACTGTCTAAACCGtttagctgtggtgactgtgggaaaagcttcgGTGTCAAGGGGAACCTAACTGTTGACATAGAGACACAGGATGATACACTTCTATttgtggtgactgtgggaaagGCTTCAATCATAAGATGGACCTAAGGAGGCATAAACTGACTTACAGtgaatttggaaagtattcagaccccttgactttttccacattttcttacattacaaccttattctagatttgattaaataaaaaaatgccctcagcaatctacacacaataactcatATTGACAGTGAAAACAGTTTATCAATTTTTTtcacatattttttaaatatttttaaataacttatttacataaagtattcagaccctttgctatatgATTATAAAATTGAGTTTgggtgcatcctttttccaatgatcatccttgatgtttctgcaacttgattggagtccacctttggaAAATTCCGTTGACAAGACATGTTCTGTCAGCTGATGAGGAATATGCAAGGATGTGGACACCTCGTAGGAAAGGAGGATCATTCACACTGAGGGTTTCAGATAAAGGTATATATAAAAGCACGTTGTGTTTTTCAACATTTTATgtgaataaagtttgatttgattcaattGATGATGTAATGATTAAACAGTGAATGGTAGGAATGTAGGAAGCTCACAGGTCTGCTGTTCTGTCTGATGTTTTCACGTTATTAAAAACAGGAATTCCTGGGCCTTTCGATTTAGAATGTCTCCCAGCTGATGAGAGAGTGGTTATTGATACATGGAAAAAATATTTACTTTCCAGAATATATCTTCCTTCCATCGGTCCAAAAGTATTTCTCATCCATTTTGACCTAATGCTGCTTATTCATGATATTGTTTTGAATCTTTTGGGAAGTAATGATTTATAATCGACACCTCGTAAGTACACTTTGTAGAAGTGCAAACTCGGTTTTAAGTATACTACAGTGTTTTTCAGTCCCAACTCAATAAAATTATTTGTAAAATCTCCTTATTACTGCATTCTTTAGTTtagcgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttca
>XM_036987239.1
TCTAGGCCCACCACCCACTAGAATAAAATGCATTTTCTAAAATTCCTAGACTAGAGCACGGAAGTAGGATTGGAGACGACTTGTTTTTATTTTCAACGTTCCCTGTGTGTAGTAAAGAAAGACCCACTGACAATACTAAATAGGCTACCCAACTCTCATTCGACTGACAATGACTAAACTACAGTTGTTGAGTGTGTTTCTAAATGAGCGCTTAACGGCGGCTGTTGTGGAGATTGTCGGGGCAGTTGAGAAAACGGTAGTGGAGTACCAGGAGGAGAATGATCGGCTACGGAGACTGCTGCGGATCACACCAGAGATACCACTAACGTTATCGAGAATAGACTACTCCCTGCAGATCTCTGTCTCTGAAGAGGAGGTTCCTCCTGAGCAGCAGCACTGTGAGCAGGAGTGGAGCCCCAGTCGGGGGCAGGAGGACCCAGAGACCACACAGATTAAAGAGAAACAGGAGGAAGTCAGGACCagtcaggaggaagagcagcttcaaGGTCTGGAGCCTGATATCATAGAGTTCGATTTCACTCCTTCAGGTGTGAAAAGTGAATGTGATCAGGAGGACCCACTTTGGTCCTTGACTCTTCCCCAAACCCAGACtgtgaaggacagagagggagactcTAAACCAGTAGATCGCAAACCTTTTGTCACCGTGAACCACCTAAAGTGTCTTGACATTCCCTGTGATCCTCCAGATAATCAGAACATTGCCTGCAGCCACAGCTCTGCTGTAAGCAGAAACCCAGTAGGACTTGACAGCAGCCCACCATTGGATCTGAACACAATAATGGGGGAAACCTGCACATGGCCCTTTTGTGGCAAGACCTTCAAACAAAAAGGACATCTGTCCAGGCACATGAgggttcacacaggagagaaaccttttagctgtggtgactgtggaaAAAGCTTCAGTCAGAAGGGGACCCTAACCATGCATAaactgactcacacaggagagaaaccgtttAGATGTTTTTTTTGCAGTAAAAGCTTCAGCCAGAAAGGGGACCTAATGAGACACATACTGACTCACACgggagagaaaccatttagctgtggtgactgCGGTAAAGGCTTCATTCGCAAGGAGCACCTAACTGCACATTTACAGACTCACACAGGAGAAGTGTCGGTCTCAAGCAGAACCTAACCATGCAGAAACTGATATAGATCTGAAACTGTCTAAACCGtttagctgtggtgactgtgggaaaagcttcgGTGTCAAGGGGAACCTAACTGTTGACATAGAGACACAGGATGATACACTTCTATttgtggtgactgtgggaaagGCTTCAATCATAAGATGGACCTAAGGAGGCATAAACTGACTTACAGtgaatttggaaagtattcagaccccttgactttttccacattttcttacattacaaccttattctagatttgattaaataaaaaaatgccctcagcaatctacacacaataactcatATTGACAGTGAAAACAGTTTATCAATTTTTTtcacatattttttaaatatttttaaataacttatttacataaagtattcagaccctttgctatatgATTATAAAATTGAGTTTgggtgcatcctttttccaatgatcatccttgatgtttctgcaacttgattggagtccacctttggaAAATTCCGTTGACAAGACATGTTCTGTCAGCTGATGAGGAATATGCAAGGATGTGGACACCTCGTAGGAAAGGAGGATCATTCACACTGAGGGTTTCAGATAAAGGTATATATAAAAGCACGTTGTGTTTTTCAACATTTTATgtgaataaagtttgatttgattcaattGATGATGTAATGATTAAACAGTGAATGGTAGGAATGTAGGAAGCTCACAGGTCTGCTGTTCTGTCTGATGTTTTCACGTTATTAAAAACAGGAATTCCTGGGCCTTTCGATTTAGAATGTCTCCCAGCTGATGAGAGAGTGGTTATTGATACATGGAAAAAATATTTACTTTCCAGAATATATCTTCCTTCCATCGGTCCAAAAGTATTTCTCATCCATTTTGACCTAATGCTGCTTATTCATGATATTGTTTTGAATCTTTTGGGAAGTAATGATTTATAATCGACACCTCGTAAGTACACTTTGTAGAAGTGCAAACTCGGTTTTAAGTATACTACAGTGTTTTTCAGTCCCAACTCAATAAAATTATTTGTAAAATCTCCTTATTACTGCATTCTTTAGTTtagcgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttca

Function

NR:

description
zinc finger protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987241.1 False 2516 mRNA 0.41 2 8450087 8455385
XM_036987240.1 False 2520 mRNA 0.41 3 8450087 8455386
XM_021614579.2 False 2277 mRNA 0.41 2 8450087 8457560
XM_036987239.1 True 2301 mRNA 0.41 3 8450087 8457581

Neighbor

gene id symbol gene type direction distance location
LOC110531388 LOC106578104 coding downstream 6989 8437178 ~ 8443098 (-)
LOC118936450 LOC106578067 coding downstream 27836 8418165 ~ 8422251 (-)
LOC110531390 LOC106578068 coding downstream 49419 8356581 ~ 8400668 (-)
LOC110531384 LOC106578065 coding downstream 107024 8340779 ~ 8343063 (-)
LOC110531383 LOC106578065 coding downstream 119963 8324225 ~ 8330124 (-)
hspa12b LOC106578073 coding upstream 32406 8489987 ~ 8533713 (-)
LOC118966156 NA coding upstream 73054 8530635 ~ 8533005 (-)
nagk nagk coding upstream 108975 8566556 ~ 8580576 (-)
LOC110532904 m1ap coding upstream 181918 8639499 ~ 8684971 (-)
LOC118966157 NA coding upstream 244457 8702038 ~ 8717338 (-)
G768504 NA non-coding downstream 41651 8408133 ~ 8408436 (-)
G768483 NA non-coding downstream 84197 8358255 ~ 8365890 (-)
LOC118965987 NA non-coding downstream 129078 8318999 ~ 8321009 (-)
G768425 NA non-coding downstream 173602 8276173 ~ 8276485 (-)
G768414 NA non-coding downstream 202677 8240270 ~ 8247410 (-)
G768528 NA non-coding upstream 2254 8459835 ~ 8501302 (-)
G768554 NA non-coding upstream 31582 8489163 ~ 8489756 (-)
G768591 NA non-coding upstream 118085 8575666 ~ 8575993 (-)
G768610 NA non-coding upstream 173035 8630616 ~ 8726033 (-)
LOC110531377 LOC106578102 other downstream 166763 8277882 ~ 8283359 (-)
LOC118936684 LOC106578100 other downstream 197332 8221531 ~ 8253809 (-)
G768390 NA other downstream 258189 8189443 ~ 8191898 (-)
LOC110510419 LOC106560462 other downstream 336017 8112588 ~ 8155916 (-)
G767056 ovol1 other downstream 1199012 7245644 ~ 7251075 (-)
G768780 NA other upstream 524887 8982468 ~ 8990706 (-)
G770225 NA other upstream 1917128 10367459 ~ 10375854 (-)
G770549 NA other upstream 2514792 10972373 ~ 10974413 (-)
G770627 LOC106577876 other upstream 2650247 11107828 ~ 11108159 (-)
G771457 NA other upstream 3171035 11628616 ~ 11629588 (-)

Expression


Co-expression Network