XLOC_026593 (coil)


Basic Information

Item Value
gene id XLOC_026593
gene name coil
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 36119782 ~ 36127234 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051808
ACCGACAGAGCGCAGCAGAGTGTGTTAGAAACCGGCGGAAGCCGTCGTTTAAAACACTGAGCGCCTCCATCATCCTCATGACTGTACTGTAACGTAGTGTAGTGTTCAGGCATGGCCACCTCCAGCCTCAACACTGCCAGGGTTAGGTTGTATTTTGACTATCCTCCTCCTGCAACACCAGAGTGTCGGATGTGTTGGTTGCTGGTGGACCTGAACAAATGCCGAGTTGTCGCAGATCTTTCCAGCATCATAAAGGAAAAGTTTGGCTACAGCCGCAAGACTATTTTAGACCTGTTTATTGAGGAATGCTACCTGCCTTCTGCTGAAAGTATTTATATAGTACGTGATAATGACAGTGTAAGAGTGAAAGTCTCCTGTCCTGTTCAGGTTAATGGAACCGAGGCTGAAGCACAAAACTCTAAAAGCAAGAAAAGAGGAAGAGAGGATGAGACTCAGACCTGTGATGGTCTAAGTAAAAAACAGAAGCAAGACAATGCTCAAATGAATGGTTTGGGACCTGACGAggatgaaaaaaagaagaaaaagaagaagaagaagaaaaagaaaaaagaggtGAAAGAGTCCATCACCAAACCTGCTACTCCCCAAAAGAGCACTGCAGCCCTTTCTACTAAAACCAAAAGTAAAAGCACCTCTGCTGTGGCATCCAGTGACAAAACGAATCGCACAAAGAATCATAAACCAGCATCAAGCTCTTCAGACAGCAGTGAGGATGAGTCTCAGAAAAAGGCTCCTCCACCAAAACCCAAACCTAGCAAGAAGCCTTGTGTAGCTGCACAGAAAGAAAGCACAGATTCATCATCTTCGGATGAAACGGAGAAACTTAAAAGCAGCATCCCGCTTCCCATTACACCTAAACCATCCAGCAGCACTTCAAAACTTCAGACACCTCAGCAGAGAGAGAGCTCATCATCGTCGTCATCTTCACCTATCATCAAGAACTCACAAGCTGCAGGTCAATCGTCCTCAACCACTCAAAAATCACTTCAGCCGGTCTCATCTTCTGTGCCTAAAAAACCTCAGGATGAGGGAGAGAGCTCCAGCTCTGATGAGAGTGAAATAGAGCTTGTGATTAAAAAACCAAACCTGCAAGGACTGGGGCTGAGAATTGCGGGTGTGAGCCCTGGGTTTGGTGAAGCTGCAGGCAGAGGCAGAGGGAACGCACAGGGGCAGGAGAGAGGCAGAGGGCGAGGGGCGAATCGTGGCAGTGGCAGAGGAGGTTTCAGCAGAGCCAGGGGAACGCCGTGGAAACAAAACTTTCATTACAGCTATGAAAATGAAGAGAGACAGAAACCAGAAGATTCTCTGACCAATGAAAGTTTTATTTTACAGAACCCACCTGAATTAGCTCCCAAACGGGACTACGCTACTTTACCTTTGCTGGCAGCTCCTCCTGCAGTGGGTCAAAAGATTGCCTTCAAGCTGTTGGAGCTGACAGAGAACTACACACCAGAGGTGTCTGATTATAAAGAAGGAAAGATTCTTGCATTCAATCCTCAAACAAAAGTGACAGAGCTGGAACTGCTCTCTCGGCCTCAAGctccAGCTGAACCCGGAAAGTTTGACTTGGTCTACCAGAATCCAGATGGCTCAGAGAGAGTAGAGTATGCTGTCACACAGGGATCACAGCTGACTGAGCGCTGGGATTCTCTTCTGGAGCCGCGACTCATTGTGGAGAATGCCAAATGACGGTCCGACAAAACCAGGCAGCCTGAGCCAGACCTGTACAGAtaacctttttattttaatgctgTCGAAACGATGTAAAAtggtattaatgttttattttattctcaatGTCAGTTAAATAaatttgtgggttttttttttgttttttgtttttaaatgactcATTGACTGTTTAATCAGTGAATGCCGAATGTTTATTGAGCTGCtgagattttatttttagtaacaaATAGTTTACTACATTTTACACTTTGTGAAAAGCTTCTGTTGCTTTTTGCGtcaatttatttgttaaatgttagAAGTAATTTATCGAATAAGTACATGTTCAGATTGTTTACGTTGTTTGACATGTCTACTAGTATTTCAATTAAagttttttattcttttcatGAATAA

Function

symbol description
coil Predicted to enable U1 snRNA binding activity and U2 snRNA binding activity. Acts upstream of or within Cajal body organization and spliceosomal snRNP assembly. Predicted to be located in nucleus. Predicted to be active in Cajal body. Is expressed widely. Orthologous to human COIL (coilin).

GO:

id name namespace
GO:0000387 spliceosomal snRNP assembly biological_process
GO:0030576 Cajal body organization biological_process
GO:0015030 Cajal body cellular_component
GO:0030619 U1 snRNA binding molecular_function
GO:0030620 U2 snRNA binding molecular_function

KEGG:

id description
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-000330-8 Predicted to enable U1 snRNA binding activity and U2 snRNA binding activity. Acts upstream of or within Cajal body organization and spliceosomal snRNP assembly. Predicted to be located in nucleus. Predicted to be active in Cajal body. Is expressed widely. Orthologous to human COIL (coilin).

Ensembl:

ensembl_id ENSDARG00000040070

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051808 True 2109 mRNA 0.44 7 36119782 36127234

Neighbor

gene id symbol gene type direction distance location
XLOC_026592 rab11fip4a coding downstream 4428 36023268 ~ 36115354 (-)
XLOC_026591 suz12a coding downstream 254742 35849392 ~ 35865040 (-)
XLOC_026590 caskin1 coding downstream 318636 35632773 ~ 35801146 (-)
XLOC_026589 gng13b coding downstream 517549 35589212 ~ 35602233 (-)
XLOC_026588 NA coding downstream 545331 35565128 ~ 35574451 (-)
XLOC_026594 engase coding upstream 9296 36136530 ~ 36153591 (-)
XLOC_026595 BX897685.1 coding upstream 43709 36170943 ~ 36171968 (-)
XLOC_026596 csnk1da coding upstream 45969 36173203 ~ 36210344 (-)
XLOC_026597 gps1 coding upstream 106826 36234060 ~ 36246975 (-)
XLOC_026598 rac3a coding upstream 121617 36248851 ~ 36260102 (-)
XLOC_026585 NA non-coding downstream 1171721 34947402 ~ 34948061 (-)
XLOC_026580 NA non-coding downstream 1477809 34641048 ~ 34641973 (-)
XLOC_026572 NA non-coding downstream 1978601 34139637 ~ 34141181 (-)
XLOC_026558 BX649502.11 non-coding downstream 2033299 34086041 ~ 34086483 (-)
XLOC_026600 NA non-coding upstream 193005 36320239 ~ 36323625 (-)
XLOC_026606 NA non-coding upstream 455866 36583100 ~ 36587136 (-)
XLOC_026612 FO744883.1 non-coding upstream 628799 36756033 ~ 36756149 (-)
XLOC_026617 NA non-coding upstream 826391 36953625 ~ 36954088 (-)
XLOC_026618 CT573704.1 non-coding upstream 840637 36967871 ~ 36967993 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_06460451_06464009 COIL coding CI01000046 null 6460451 ~ 6464335 (-)