leap2 (leap-2a)


Basic Information

Item Value
gene id leap2
gene name leap-2a
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 9083247 ~ 9145704 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124464.1
agagaagagagatccCACCAGAGCTCCAGTTACTGAGGACACAGTACAATACGTGTTTTCAAAGTTCTGTCTATCTACTCTACTTCTGTCTTTCTGAATCATCTGACTCTAAGCTACTCCAACATGCAGGACCGTCAACACTACTTCATGATAGCCTTCACATGGTTCCTGGTGTTTCTGGTGCTCGGTCCGCAGGCGTCTGCCAGCCCTGTTCCATCTCTGGATGTCCCGCCCAGCTCTGGTCATCTCCAGCCTGAAGGTCAGAGGGCACTGAAGCGGATGGCTCGTATGACCCCGTTGTGGAGGACCATGGGTACTAAACCCTACGGGGCGTACTGTCTTAACAACTATGAGTGCTCCACTGGGATTTGCAGgggTGGCCACTGCATGTTCAGCCAACCCATCAAGTCGTAGAAGAGAAGACGGAGGAACGCTCCCAACGTTTCTCCCAATCTGTTCTCCATGGAcataccctccctctcctctacataGCCAAACATGCAGACATTATGTGGCTTGACATCTATCTATGCAAAACAACCTCTGTATTCATAATGTATAGCTGAAGTATGAGAAGAGTTAACATATCTGAAAGGAAGGGTTAAGGTATAcctaaaatatatatgtattccTGAAGATTTTGCGTAGGCAAAGGGGATTGCTATATTTTACTCTATCTTTCTGACTTTACCAAAGTAAGGAGATGACATGATGATAAGGGTAAGATTTAGCCTAATATTACAGGTTAAAGCATCTTTAACAAACCCCTTATTGAGATGTTCCTAAGAATGTATCGTCCTTTAGGATTTTCCTTAGGCAAAAGGTTGGGTTACGTTTTTAGGAAAAAtaattccaaaagggttcttcgggtgtctccgtaggagaaccctttctggTTTCAGGtagaaagggttctcctatgaggacagccaaagaacccttctgGGTTCTAGATAACGCATTTTTTTGTTCTAAGAGTGAAGATGTGATATTGAATGCTAGCTTTTGGACTGTACCAAGGGGAACAGCATGTAAATGTGACAGACACGTGGATTGTTGGTTATAAGGTTTCCAATATTTCTACTAATATTTCATACAGGGTGCTGGCCAGAGACAAAACAGTAGCTAGGCGCCTAAACATAGTCATTCAAAGTGCTTCACCAAATGTTAACAGTCAACACACTCACATTCAACGTAATGGTGACTATATTCGCTTTGCCATCGAGGAATTTATCCTCCAACTATATCTGTCGTGCAGTATCTGTTCAATCGGATTAGATGACGTGGCCTTTTTTTAAAATCAGAATCGGATACATTTTCATGGTACATGCATGATACTTTGATCATACTTGATAGTGACGTGGAGAGATAGGCAATGTCATAACGTCAGACTTTGGAACTTTGTGTtctgggtaaaaaaaatatacaacaaaaaaaagagagagcgaaaaaggggaaagggagaacgagagagagagaaaccgtaGTGTCATTGAAccagaggtagagggggagagaaagagatagatagatagatagatagatagagagtgagagtgagaacaGACATGGAGCAATGGTTATGTGTAATGATTGACCTCACCTTTGACCTCTCGGCCAGATGTTTTATGCATTTAGAGATGTACTAGAGAGCTCGTCTCCTGTCTTTGCAATGGCCTTTGGTCCAAGTGCTCTCTATCCAACTTCATGTTTATGCATGCTCACTTTTTTCTACTTTTTATATATAGAAACATATTTAAATCGTTTTCGTATATGTATTCACTGTATGTATGTAATTAAACAAGTATTTATATCGTAGTCAGTATTTTGTGAGATTACAACTAGTCTCAAGGTTGGGAATTACGTTTAAGCCTGTGGTCTGATGAACAGCATCAAAatgatatattttttattaagaTTTCTTATTTATACCATTCGTTATCATTCGTACTCGTTTGAACGAAATGTCATTAAAATATCCTGTTCGTTGTATTGTACTTCCTCAAACTACATGGTTGCCATAGATACCAACGTATATCAATCTCCTCTGGTCACAAAACAATGTGCAATGCTAAATAAAGAGTATTCTTAAATGAC
>TU875800
ggggactATAAAGAGGAAGGGACAATCTACTtctgtagagagaagagagatccCACCAGAGCTCCAGTTACTGAGGACACAGTACAATACGTGTTTTCAAAGTTCTGTCTATCTACTCTACTTCTGTCTTTCTGAATCATCTGACTCTAAGCTACTCCAACATGCAGGACCGTCAACACTACTTCATGATAGCCTTCACATGGTTCCTGGTGTTTCTGGTGCTCGGTCCGCAGGCGTCTGCCAGCCCTGTTCCATCTCTGGATGTCCCGCCCAGCTCTGGTCATCTCCAGCCTGAAGGTCAGAGGGCACTGAAGCGGATGGCTCGTATGACCCCGTTGTGGAGGACCATGGGTACTAAACCCTACGGGGCGTACTGTCTTAACAACTATGAGTGCTCCACTGGGATTTGCAGgggTGGCCACTGCATGTTCAGCCAACCCATCAAGTCGTAGAAGAGAAGACGGAGGAACGCTCCCAACGTTTCTCCCAATCTGTTCTCCATGGAcataccctccctctcctctacataGCCAAACATGCAGACATTATGTGGCTTGACATCTATCTATGCAAAACAACCTCTGTATTCATAATGTATAGCTGAAGTATGAGAAGAGTTAACATATCTGAAAGGAAGGGTTAAGGTATAcctaaaatatatatgtattccTGAAGATTTTGCGTAGGCAAAGGGGATTGCTATATTTTACTCTATCTTTCTGACTTTACCAAAGTAAGGAGATGACATGATGATAAGGGTAAGATTTAGCCTAATATTACAGGTTAAAGCATCTTTAACAAACCCCTTATTGAGATGTTCCTAAGAATGTATCGTCCTTTAGGATTTTCCTTAGGCAAAAGGTTGGGTTACGTTTTTAGGAAAAAtaattccaaaagggttcttcgggtgtctccgtaggagaaccctttctggTTTCAGGtagaaagggttctcctatgaggacagccaaagaacccttctgGGTTCTAGATAACGCATTTTTTTGTTCTAAGAGTGAAGATGTGATATTGAATGCTAGCTTTTGGACTGTACCAAGGGGAACAGCATGTAAATGTGACAGACACGTGGATTGTTGGTTATAAGGTTTCCAATATTTCTACTAATATTTCATACAGGGTGCTGGCCAGAGACAAAACAGTAGCTAGGCGCCTAAACATAGTCATTCAAAGTGCTTCACCAAATGTTAACAGTCAACACACTCACATTCAACGTAATGGTGACTATATTCGCTTTGCCATCGAGGAATTTATCCTCCAACTATATCTGTCGTGCAGTATCTGTTCAATCGGATTAGATGACGTGGCCTTTTTTTAAAATCAGAATCGGATACATTTTCATGGTACATGCATGATACTTTGATCATACTTGATAGTGACGTGGAGAGATAGGCAATGTCATAACGTCAGACTTTGGAACTTTGTGTtctgggtaaaaaaaatatacaacaaaaaaaagagagagcgaaaaaggggaaagggagaacgagagagagagaaaccgtaGTGTCATTGAAccagaggtagagggggagagaaagagatagatagatagatagatagatagagagtgagagtgagaacaGACATGGAGCAATGGTTATGTGTAATGATTGACCTCACCTTTGACCTCTCGGCCAGATGTTTTATGCATTTAGAGATGTACTAGAGAGCTCGTCTCCTGTCTTTGCAATGGCCTTTGGTCCAAGTGCTCTCTATCCAACTTCATGTTTATGCATGCTCACTTTTTTCTACTTTTTATATATAGAAACATATTTAAATCGTTTTCGTATATGTATTCACTGTATGTATGTAATTAAACAAGTATTTATATCGTAGTCAGTATTTTGTGAGATTACAACTAGTCTCAAGGTTGGGAATTACGTTTAAGCCTGTGGTCTGATGAACAGCATCAAAatgatatattttttattaagaTTTCTTATTTATACCATTCGTTATCATTCGTACTCGTTTGAACGAAATGTCATTAAAATATCCTGTTCGTTGTATTGTACTTCCTCAAACTACATGGTTGCCATAGATACCAACGTATATCAATCTCCTCTGGTCACAAAACAATGTGCAATGCTAAATAAAGAGTATTCTTAAATGACCCCTGAGGCAGATTTTCTTTGTCTTCATAAGCCCCTTTTCAGTGTGTCTACTACGGTCTACTAATATCAGCCTCTTCATATTCTTGTATTTTCATAACGCAAACTTTGGAAATAAAGAATAGACGTTGT
>TU875802
CTCTGACACATTGTCATGGCTGTGTGTAAATGTACACACACTCTCCAGCTAAAGGTAATACTGAGAAATCTCCCACTTCGCCTGGAAATTATTCCATGTATTCCAATTCTCTACATAGTACaccacttctgaccagagccttaAGTTGTGCACTAAAACAGAACAGGCTCCCATTAAGGATGCAGGcttggagagagacacagagagagagagagagagagagagagagagagagagagagagagagagagagagacagagagagagtgagagagagagagagagaagagagatccCACCAGAGCTCCAGTTACTGAGGACACAGTACAATACGTGTTTTCAAAGTTCTGTCTATCTACTCTACTTCTGTCTTTCTGAATCATCTGACTCTAAGCTACTCCAACATGCAGGACCGTCAACACTACTTCATGATAGCCTTCACATGGTTCCTGGTGTTTCTGGTGCTCGGTCCGCAGGCGTCTGCCAGCCCTGTTCCATCTCTGGATGTCCCGCCCAGCTCTGGTCATCTCCAGCCTGAAGGTCAGAGGGCACTGAAGCGGATGGCTCGTATGACCCCGTTGTGGAGGACCATGGGTACTAAACCCTACGGGGCGTACTGTCTTAACAACTATGAGTGCTCCACTGGGATTTGCAGgggTGGCCACTGCATGTTCAGCCAACCCATCAAGTCGTAGAAGAGAAGACGGAGGAACGCTCCCAACGTTTCTCCCAATCTGTTCTCCATGGAcataccctccctctcctctacataGCCAAACATGCAGACATTATGTGGCTTGACATCTATCTATGCAAAACAACCTCTGTATTCATAATGTATAGCTGAAGTATGAGAAGAGTTAACATATCTGAAAGGAAGGGTTAAGGTATAcctaaaatatatatgtattccTGAAGATTTTGCGTAGGCAAAGGGGATTGCTATATTTTACTCTATCTTTCTGACTTTACCAAAGTAAGGAGATGACATGATGATAAGGGTAAGATTTAGCCTAATATTACAGGTTAAAGCATCTTTAACAAACCCCTTATTGAGATGTTCCTAAGAATGTATCGTCCTTTAGGATTTTCCTTAGGCAAAAGGTTGGGTTACGTTTTTAGGAAAAAtaattccaaaagggttcttcggggttctcctatgaggacagccaaagaacccttctgGGTTCTAGATAACGCATTTTTTTGTTCTAAGAGTGAAGATGTGATATTGAATGCTAGCTTTTGGACTGTACCAAGGGGAACAGCATGTAAATGTGACAGACACGTGGATTGTTGGTTATAAGGTTTCCAATATTTCTACTAATATTTCATACAGGGTGCTGGCCAGAGACAAAACAGTAGCTAGGCGCCTAAACATAGTCATTCAAAGTGCTTCACCAAATGTTAACAGTCAACACACTCACATTCAACGTAATGGTGACTATATTCGCTTTGCCATCGAGGAATTTATCCTCCAACTATATCTGTCGTGCAGTATCTGTTCAATCGGATTAGATGACGTGGCCTTTTTTTAAAATCAGAATCGGATACATTTTCATGGTACATGCATGATACTTTGATCATACTTGATAGTGACGTGGAGAGATAGGCAATGTCATAACGTCAGACTTTGGAACTTTGTGTtctgggtaaaaaaaatatacaacaaaaaaaagagagagcgaaaaaggggaaagggagaacgagagagagagaaaccgtaGTGTCATTGAAccagaggtagagggggagagaaagagatagatagatagatagatagatagagagtgagagtgagaacaGACATGGAGCAATGGTTATGTGTAATGATTGACCTCACCTTTGACCTCTCGGCCAGATGTTTTATGCATTTAGAGATGTACTAGAGAGCTCGTCTCCTGTCTTTGCAATGGCCTTTGGTCCAAGTGCTCTCTATCCAACTTCATGTTTATGCATGCTCACTTTTTTCTACTTTTTATATATAGAAACATATTTAAATCGTTTTCGTATATGTATTCACTGTATGTATGTAATTAAACAAGTATTTATATCGTAGTCAGTATTTTGTGAGATTACAACTAGTCTCAAGGTTGGGAATTACGTTTAAGCCTGTGGTCTGATGAACAGCATCAAAatgatatattttttattaagaTTTCTTATTTATACCATTCGTTATCATTCGTACTCGTTTGAACGAAATGTCATTAAAATATCCTGTTCGTTGTATTGTACTTCCTCAAACTACATGGTTGCCATAGATACCAACGTATATCAATCTCCTCTGGTCACAAAACAATGTGCAATGCTAAATAAAGAGTATTCTTAAATGACCCCTGAGGCAGATTTTCTTTGTCTTCATAAGCCCCTTTTCAGTGTGTCTACTACGGTCTACTAATATCAGCCTCTTCATATTCTTGTATTTTCATAACGCAAACTTTGGAAATAAAGAATAGACGTTGT

Function

NR:

description
liver-expressed antimicrobial peptide 2 isoform A precursor

GO:

id name namespace
GO:0042742 defense response to bacterium biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124464.1 False 2097 mRNA 0.40 3 9083376 9087297
TU875800 False 2264 lncRNA 0.40 3 9083247 9087335
TU875802 True 2466 lncRNA 0.41 5 9083247 9145704

Neighbor

gene id symbol gene type direction distance location
phka1a LOC106578056 coding downstream 6013 9023713 ~ 9077363 (-)
LOC118966157 NA coding downstream 366038 8702038 ~ 8717338 (-)
LOC110532904 m1ap coding downstream 398405 8639499 ~ 8684971 (-)
nagk nagk coding downstream 502800 8566556 ~ 8580576 (-)
hspa12b LOC106578073 coding downstream 549663 8489987 ~ 8533713 (-)
bmp15 LOC106578107 coding upstream 16937 9104234 ~ 9107459 (-)
LOC110531417 LOC106578044 coding upstream 207467 9294764 ~ 9348258 (-)
LOC110531429 LOC106578053 coding upstream 896195 9983492 ~ 9988450 (-)
LOC118965989 NA coding upstream 1030463 10116536 ~ 10130445 (-)
LOC118965990 NA coding upstream 1048232 10135529 ~ 10137709 (-)
G768819 NA non-coding downstream 2803 9080327 ~ 9080573 (-)
G768810 NA non-coding downstream 32031 9049892 ~ 9051345 (-)
G768788 LOC106578060 non-coding downstream 78885 9003453 ~ 9004491 (-)
G768785 NA non-coding downstream 82600 9000499 ~ 9000776 (-)
G768725 syt4 non-coding downstream 101583 8916025 ~ 8981793 (-)
G768853 NA non-coding upstream 56672 9143969 ~ 9144612 (-)
G768861 NA non-coding upstream 86789 9174086 ~ 9174299 (-)
G768863 NA non-coding upstream 91263 9178560 ~ 9178813 (-)
G768865 NA non-coding upstream 93116 9180413 ~ 9180925 (-)
G768867 NA non-coding upstream 96173 9183470 ~ 9183815 (-)
G768780 NA other downstream 92670 8982468 ~ 8990706 (-)
LOC110531377 LOC106578102 other downstream 800052 8277882 ~ 8283359 (-)
LOC118936684 LOC106578100 other downstream 830621 8221531 ~ 8253809 (-)
G768390 NA other downstream 891478 8189443 ~ 8191898 (-)
LOC110510419 LOC106560462 other downstream 969306 8112588 ~ 8155916 (-)
G770225 NA other upstream 1287412 10367459 ~ 10375854 (-)
G770549 NA other upstream 1885076 10972373 ~ 10974413 (-)
G770627 LOC106577876 other upstream 2020531 11107828 ~ 11108159 (-)
G771457 NA other upstream 2541319 11628616 ~ 11629588 (-)
LOC110531452 LOC106577886 other upstream 2611102 11698392 ~ 11701613 (-)
LOC118966156 NA coding downstream 550829 8530635 ~ 8533005 (-)
LOC110531425 LOC106578047 coding upstream 994919 10140623 ~ 10213285 (-)
G768767 NA non-coding downstream 131970 8950780 ~ 8951277 (-)
G768868 NA non-coding upstream 38141 9183845 ~ 9184349 (-)

Expression


Co-expression Network