LOC110531417 (LOC106578044)


Basic Information

Item Value
gene id LOC110531417
gene name LOC106578044
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 9294764 ~ 9348258 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987268.1
CAACTTTCTTTCTCAACTCGCCTTGCACAGCAGTCATCGTGCCAAAGAGGAAGGAATAGGAGTGTTTACCCTGCTTTCTCCTCCCACTCAAAACTGAATGGAAGGACTCTTTCGGAATCGGAAAAGCAGGAGACACACTCGTTTAGCTTAGACATTGATTTAATTTACCCGTCCGGTCAGCGACttctttgttgtgttttttttaaggATACTCATGCGTCGGGAATGCCACCATGGCCACGCCGAACAGTCTACAGCAGCAGCAGGATTACTTCAGAAGCGTCAGCAGCGAATCCACCACGTATATGATGGTCCCGGCCACGACGGCAGCGGCAAACACGCGTCGCGATGCCGCGCCGTCCAAGATGTGGGTCGCTATGGTGGTGATTGTGGTGGTCGTTCTACAGATTGCTTCTACTACAGGTCTGTTCGTCTACCTGAATATGTCGATATCACAGGTGCGtagccagggcgtgacagaggaGCTGAAGTGCCTCAGTCTGCTGAATGCTCTGGATAAAGACCAGGACATCCCAGAAGACCTGGCTCAGCTGTTTGGAGAACCCTGCATCAAGCTGGCAGAGGGCATCAAGGCCTACATCTCAAAGGTAACCGAGAACATAATCTCCAAGCAGACGTTTCAGGAAGCGAGAACGTTACCGCGCACCTTCAACACTTCCGGGTCAAAGTTTGCGACCTCTGTGACCCAGCGTCCATCAGCCCACCTGACCCTCAGAGACAGCAGTGCTCAAGGGTCTCCTTCGTACCTCACCCCCCAGCCTGACCTCCACCAATCATGTCGCCACGCCATCCGTTCCTGGGCCAATCAGAGCTTTGGAGCCCATCTTCACAACATGACCTTAGCCAATGGGAGGCTGCGTGTGCCCCAGGATGGGCGGTACTACCTGTACTCACAGGTGTACTTCCGCTACCCATCCCTTAATGAAGGGGACCAACATACAACCAGTCACCAGCTGGTCCAGTGTGTATACAAGAAGACGTCCTACCTGAGACCCATCCAGCTGCTGAAGGGTGTAGGAACCAAGTGCTGGGCCCCAGACGCGGAGTACGCCCTCCACTCTGTGTACCAGGGAGGGCTGTTTGAGCTCAGGGCCGGGGATGaactctttgtctctgtctcgtcCCCCTCCATGGTCCATGCGGAGGATTCATCAAGTTATTTTGGGGCATTCCGTTTGGACCTGTAAAGATGGATGGAAAGGAGAGGGTGGTAAACCACCAGAAGAGGGTGGTAAACCacgaggagaggggggtgggtggGATAAAAAGGAAAGGTGGAGGAAAGGAGGACAGGTTCAGGA

Function

NR:

description
tumor necrosis factor ligand superfamily member 10-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987268.1 True 1322 mRNA 0.54 6 9294764 9348258

Neighbor

gene id symbol gene type direction distance location
bmp15 LOC106578107 coding downstream 187305 9104234 ~ 9107459 (-)
leap2 leap-2a coding downstream 207467 9083247 ~ 9145704 (-)
phka1a LOC106578056 coding downstream 217401 9023713 ~ 9077363 (-)
LOC118966157 NA coding downstream 577426 8702038 ~ 8717338 (-)
LOC110532904 m1ap coding downstream 609793 8639499 ~ 8684971 (-)
LOC110531429 LOC106578053 coding upstream 635234 9983492 ~ 9988450 (-)
LOC118965989 NA coding upstream 769502 10116536 ~ 10130445 (-)
LOC118965990 NA coding upstream 787271 10135529 ~ 10137709 (-)
LOC110531425 LOC106578047 coding upstream 792365 10140623 ~ 10213285 (-)
LOC110531433 LOC106578048 coding upstream 892967 10241225 ~ 10247265 (-)
G768920 NA non-coding downstream 124 9292832 ~ 9294640 (-)
G768911 NA non-coding downstream 33111 9260587 ~ 9261653 (-)
G768895 NA non-coding downstream 60180 9234290 ~ 9234584 (-)
G768894 NA non-coding downstream 63632 9230877 ~ 9231132 (-)
G768892 NA non-coding downstream 65632 9228724 ~ 9229132 (-)
G768957 NA non-coding upstream 5364 9353622 ~ 9353922 (-)
G768960 NA non-coding upstream 9655 9357913 ~ 9358159 (-)
G768975 NA non-coding upstream 42217 9390475 ~ 9391160 (-)
G768990 NA non-coding upstream 59856 9408114 ~ 9408404 (-)
G768999 NA non-coding upstream 71640 9419898 ~ 9420204 (-)
G768780 NA other downstream 304058 8982468 ~ 8990706 (-)
LOC110531377 LOC106578102 other downstream 1011440 8277882 ~ 8283359 (-)
LOC118936684 LOC106578100 other downstream 1042009 8221531 ~ 8253809 (-)
G768390 NA other downstream 1102866 8189443 ~ 8191898 (-)
LOC110510419 LOC106560462 other downstream 1180694 8112588 ~ 8155916 (-)
G770225 NA other upstream 1026451 10367459 ~ 10375854 (-)
G770549 NA other upstream 1624115 10972373 ~ 10974413 (-)
G770627 LOC106577876 other upstream 1759570 11107828 ~ 11108159 (-)
G771457 NA other upstream 2280358 11628616 ~ 11629588 (-)
LOC110531452 LOC106577886 other upstream 2350141 11698392 ~ 11701613 (-)

Expression


Co-expression Network