LOC110531429 (LOC106578053)


Basic Information

Item Value
gene id LOC110531429
gene name LOC106578053
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 9983492 ~ 9988450 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614628.2
ATGAGCAGCGGCGGCATCCCCCAGAACACTACTTCCTCCTCGCCCTTTGACCCCTCGCCCCTGGACCCCTGGCTTGACCCCTACCCTGACCCCTACCCTGACCTCCCCGGGGTTAACGCCTCCTCCTCCGACGTCCCCGGCCGCACCTATACCTCCGACCTTGACTTACGACCTCTGACCTCACAACAGGATGTTAGCCCATGGGATGTGGCGTTATGTGTCACGGGTACACTCATCGCCTGCGAGAACGCTCTGGTCATCGCCGTCCTCTTCTACACGCCGACCCTCAGAGCGCCGATGTTCATCCTGATTGGCTCGCTGGCATTCGCCGACCTCCTGGCGGGTCTCGGTCTCATCCTGAACTTCGTGTTCACCTATCTTGTCGAGGGAGAGGTCGTGACCTTGGTTGCCACAGGGATACTCATTGCGGCATTCTCGGCATCCATCTTGAATATCTTAGCGATCACCGTGGACAGGTACCTGTCGCTGTACAACGCGCTGACCTACCACACGGAGCGGACTGTCCTCTTCACATACCTGGTGGTAGGGGTCATCTGGTTGGTGTGTCTGGTTCTCGGGGCCCTCCCCGCACTCGGGTGGAACTGCCTAGACGACCAATCAACGTGCTCAGTCTGTCGACCCGTCACCAAATCCAACGCCGTCGCCCTCGCTGTCTTCTTCCTACTGGTTTTCGCGTTGATGATGCAACTCTACCTGCAGATCTGTCGGATCGCGTTCCGTCACGCTCAGCAAATCGCCGTCCAGCATCAGTTCCTCGCCATTTCCACGACCAAAGGAGTCCAGACGCTCTCCGTGATTCTCTGCGCCTTCGCCATGTGTTGGCTGCCGTTTGCTATGTATTCTATCGTGGCAGATTCAAGCTATCCTATCATATACACATACTCTACGGTGCTGCTGGCGGCGTGTAATTCAGTCATAAATCCTATTATATATGCGTTCAGGAACCCGGATATACAGAAGGGGCTCTGGTTGGCGTGTTGTGGGTGTGTCCCGTCAAATCTGAGTCTGAGACCTCGAGCCAGGACATCCAGTGATGTATAGGGAAGCATTGTTCATGGTTACGACCGCTCCAACCTCTCCCTCCGGCCCTGGACCTGGCAATGTCTAGGGAGGGGGTGTAGCGACGTATATAGAAGGGGGGCAGGATGATGTCGGTATTGGAGGAGGTGTGGGTGTACGCCTTCCAACCTAGCTCTgtgacccagggcctccagcaaACTTGGACATCCAGAAGAGAATGTGGTGGTGAGATCAAGGGACATGGTGATGACCCCCCCTAGGATCTCCAGTGAGGGGGTAAGCTTTAGGGAGAGGACTCAGTGAGGTCAAAGGGGACCCTAAGAGGCAAGAGGGAGGGTGTGGGGTGGTGACCTGGCAATGTAACCCCCTTCCCATCCTTCTCCAGGGTCTAGATCAGAGTTGCAGGGGCGGATGCGGCTCTCCTTCATCAAAGGATGAGGGGCCATGGACTGGACTGAGAAAGTCTGGGATGGTTTGCCCTGGGCCTAGGCTATACTTTGCAATGCCACTTCAGTGGGGGATCATAGGCCTCTACAAGGCTACTCGTTCAGAGGATGAGCACGAGTAGTACAGCCTAAGGAGTGGCCTCGATGGAAGATGAGCCGGAACTTACTGATGAGCTAACTTGCTTATGATGAGCTAACTTGCTTATGATGAGCTAACTTGCTAATGATGAGCTAACTTGCTTATGATGAGCTAACTTGCTTACTGATGAGCTAACTTGCTTATGATGAGCTAACTTGCTAATGATGAGCTAACTTGCTTATGATGAGCTAACTTGCTTATGATGAGCTAACTTGCTAATGATGAGCTAACTTGCTTATGATGAGCTAACTTGCTTACTGATGAGCTAACTTGCTAATGATGAGCTAACTTGCTTATGATGAGCTAACTTGCTTATGATGAGCTAACTTGCTTACTGATGAGCTAACTTGCTTATGATGAGCTAACTTGCTAATGATGAGCTAACTTGCTTATGATGAGCTAACTTGCTTATGATGAGCCAACTTGCTTATGATGAGCTAACTTGCTTATGATGAGCTAACTTGCTTATGATGAGCTAACTTTCTTATGATGAGCTAACTTGCTTATGATGAGCCAACTTGCTTATGATGAGCCAACTTGCTTATGATGAGCTAACTTGCTTATGATGAGCTAACTTTCTTATGATGAGCTAACTTGCTTATGATGAGCTAACTTGCTTATGATGAGCCAACTTGCTTATGATGAGCTAACTTGCTTATGATGAGCTAACTTGCTTATGATGAGCTAACTTTCTTATGATGAGCTAACTTGCTTATGATGAGCCAACTTGCTTATGATGAGCTAACTTGCTTATGATGAGCTAACTTGCTTATGATGAGCTAACTTGCTTATGATGAGCCAACTTGCTTATGATGAGCCAACTTGCTTATGATGAGCTAACTTGCTTATGATGAGCTAACTTGCTTATGATGAGCTAACTTGCTTATGATGAGCCAACTTGCTTATGATGAGCCAACTTGCTTATGATGAGCTAACTTGCTTATGATGAGCTAACTTGCTTATCATGAGCCAACTTGCTTATGATGAGCCAACTTGCTTATGATGAGATAACTTGCTAGTGATGAGCTAACTTGCTAGTGATGAGCTAACTTGCTTATGATGAGCTAACTAGCCAACAATGTTGATGTGTGTTAGGTGGGAATGCTACGACCTTGAGGTTTTCATTCAAAACCTTAGAAACTATCATGCCACAATGATCTTGTTGCTGATGATGACTAAAGCTCTTGGATAAAAGACAAGCGTATAAcgcataacagacagacagacagacacgcaaaGCCAATATGAAGTCTGATTCATTGTTACCCTTGGAGAAGAAACATACCATTTTTTGAAAAGCCCACAAGAGGTTTCCCTGTTATCACCAATGCCATAAACCTCctaattttttatatatttttttacagctgCTAAGCAGTGTATGTTGCCGGCCTACAGTCATGAGGTATAGAAATGCAATTACAGTCAAGTCATCGTTCTAGTAATTCTAGAAACACACTGGGCAGCTAAAACcgtttcagcaccacggacagcgaAACACAGCGTCAAAAGCTAATTTCAGCACCAGCGAGCTGATGCTTGTAGTCCCTACTTGATTCTGCTCTATGGTCAGTTTTTGCATTCTCCCCCTTACTGGTTAATTTAACCAATTTGGGAAGTGAAATCTGATTCTCGATCTGTGACTAAGGTCATGGGAAATTCTATCCGGAGCCAGCTAACCAGACAGTCGTTTCAACACTTCTCACTGGTTGTACGGTTGAATAATTCATTGGAAAACAGGCCTGGTGTGTAGAGAAGGAGAAAACACAGCCCTGTGAGTTTATCtttccagacagacagagcgagaggtgACAAAACGTGTGTCACAGCCGGGGCTCATGTTCGCAGGGCCTTTGGCGGAGGTTCAATCACTTTGTGGTGTGGTGGGTTCTAACCATTCTAGTTCTAACTAATGGTTCTAAATGACGCGGAGGGTTCTAACCATTCTAGTTCTAACTAATGGTTCTAAATGACGCGGTGGGTTCTAACCATTCTAGTTCTAACTAATGGTTCTAAATGACCCGGTGGGTTCTAACCCTTCTAGTTCTAACTAATGGTTCTAAATGACTCGGTGGGTTCTAACCATTCTAGTTCTAACTAATGTTTCTAAATGACTCGGTGGGTTCTAACCATTCTAGTTCTAACTAATGTTTCTAAATGACTCGGTGGGTGCTAACCAAGTGACAGCAGAGGGAGTCTGTCATATCTGACTAGTATCCTTTTAGAATGATCATAGGTTGAAAGTATTGTGTGACAGGCAATCACAACAATTAATAGGTCTACACATCGCAATTCGATATCATTTGATATCATTAACGGGACTTGAAATAAAATGTCAACTGGGCCTATTGATTATGTACACATGGGTTTACAAGTATTGATTTAGGCAGACAAGTTAAATGATAACGATTGATCAACCCACGTCTGAAAACCGTCAATGGAAACAGCATATTGACTACCCTTCATGTCAGGTGAAGTGAACATGGATCCAAATCCAATAGGGTTGTATTGATTAGCTGCCGATGCATGGACAATAGGCAACAGCAGCACAGCAGAACGGAATGCAGGAccagactgggaccagaaatcagcCCTGGCATTTCTAAAAAACCTGTCCATTTATTTACTTGAACAATATTAGCCAGATAATGATAATTTTGCTATTAAAAACCGAAGTTAGACAGTCCCACGGGTTAAAAATGGACCAGTCTGCCCCTGATGGAATGTAAAACACAAAACCACACTCTATGGGGTTTTATCTAAATGATTCTATTGGCCGATATACCcctcatttcccctctctctcaatgcTGTTTGTCTCAACACACGCTCCACACCACACGCCCCCTCTCGGCTCTGTATCTCTGAAC

Function

NR:

description
G-protein coupled receptor 12-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614628.2 True 4496 mRNA 0.46 3 9983492 9988450

Neighbor

gene id symbol gene type direction distance location
LOC110531417 LOC106578044 coding downstream 635234 9294764 ~ 9348258 (-)
bmp15 LOC106578107 coding downstream 876033 9104234 ~ 9107459 (-)
leap2 leap-2a coding downstream 896195 9083247 ~ 9145704 (-)
phka1a LOC106578056 coding downstream 906129 9023713 ~ 9077363 (-)
LOC118966157 NA coding downstream 1266154 8702038 ~ 8717338 (-)
LOC118965989 NA coding upstream 129310 10116536 ~ 10130445 (-)
LOC118965990 NA coding upstream 147079 10135529 ~ 10137709 (-)
LOC110531425 LOC106578047 coding upstream 152173 10140623 ~ 10213285 (-)
LOC110531433 LOC106578048 coding upstream 252775 10241225 ~ 10247265 (-)
LOC110531436 LOC106578050 coding upstream 273843 10262293 ~ 10273980 (-)
G770082 NA non-coding downstream 8384 9974210 ~ 9975108 (-)
G770080 NA non-coding downstream 15593 9967696 ~ 9967899 (-)
G770076 NA non-coding downstream 22022 9961247 ~ 9961470 (-)
G770071 NA non-coding downstream 26738 9956458 ~ 9956754 (-)
G770029 NA non-coding downstream 29212 9951244 ~ 9954280 (-)
G770098 NA non-coding upstream 30995 10019445 ~ 10019665 (-)
G770099 NA non-coding upstream 31587 10020037 ~ 10020236 (-)
G770118 NA non-coding upstream 49740 10038190 ~ 10038756 (-)
G770139 NA non-coding upstream 111453 10099903 ~ 10100534 (-)
G770140 NA non-coding upstream 112192 10100642 ~ 10100846 (-)
G768780 NA other downstream 992786 8982468 ~ 8990706 (-)
LOC110531377 LOC106578102 other downstream 1700168 8277882 ~ 8283359 (-)
LOC118936684 LOC106578100 other downstream 1730737 8221531 ~ 8253809 (-)
G768390 NA other downstream 1791594 8189443 ~ 8191898 (-)
LOC110510419 LOC106560462 other downstream 1869422 8112588 ~ 8155916 (-)
G770225 NA other upstream 386259 10367459 ~ 10375854 (-)
G770549 NA other upstream 983923 10972373 ~ 10974413 (-)
G770627 LOC106577876 other upstream 1119378 11107828 ~ 11108159 (-)
G771457 NA other upstream 1640166 11628616 ~ 11629588 (-)
LOC110531452 LOC106577886 other upstream 1709949 11698392 ~ 11701613 (-)

Expression


Co-expression Network