LOC110531433 (LOC106578048)


Basic Information

Item Value
gene id LOC110531433
gene name LOC106578048
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 10241225 ~ 10247265 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614633.2
CTTCACGCGCAGATAAACGGCAACGACTTTTAGAAAAGTTGAGCACGCACACAGACCTGCAGGCTGTTTGACCTCATTTGACAGTTAGGTAATGACTTTGCGCTGACAGCACTTTCTAGAAGTTCTCCTTTTTAGCGCCAGATGGAATGAAGTTTAGGTCACGGGTGAAGAGTCACCAATACGCGCAGTCGTTTCATTGCGTGGATTCATTGGACTTGTATAGAAATAGAAAATCggagaaaataaaaataacttctggactaTTTTCGAGTGCATATTTTGAATAAGTGGAGACAGgatgtaaatgtttttttctctATCAAAGGAACTTGTATACTGTCTTATTTGTCACACAGACAACTTCAATAACGGGAAAAGAGAGCTGCGAAAAGTGGACCCATATGGAATAAAATCAACTGAAAAAAAGAGACACTGgcttttggaatatttttttaataaaaaaattataTGTGGACAATAATGTGGTGTAACTAGACTTGATTGTTTTCTACCAACTCATAGCCCAACCATGCAGCAACAACGCTTGCTCAAGGTCCTGGTCATCGGTGACTTGGGTGTCGGCAAGACGTCCATAATCAAGCGTTATGTCCATCAGATATTCTCTCAACATTACCGGGCCACCATAGGAGTAGACTTCGCTCTCAAAATACTCAATTGGGATCACAAGACGGTGGTGCGTCTGCAGTTGTGGGACATAGCCGGCCAGGAGCGCTATGGCAACATGACGCGAGTCTACTACCGTGAGGCTGTGGGTGCGTTGGTGGTGTTTGACATGACCCGAGCCTCTACCTTCCAGGCTGTCCTCAAGTGGAAGAGAGATCTCGACTCCAAGGTTGCTCTGGGTAACGGGAGGCCAATTCCGGCCGTCCTATTGGGTAATAAGTGTGACCAACTGAGCACTGGTCTCTGCTCCAAACTGCCCAAACTGGAGAACTTCACCAGAGACCACGGCTTCGTGGGGTGGTACGAGACCTCAGCCAAGGACAACACCAACATCGATGCGGCCATCATGTGTTTGGTAGAGAGCATCATGgcggtagaggaggagaggtcgtCAGGTGGAGATACTAGAGACCCCAGTGTCCTGCTCCTACCACGCTTTGACTACAATATgaaagagaggacaggggggCCAGGGTGTGATGGGTGTAATAAAAAGATTACTCTGCCGGgacggagagagatgggagatatcTGAGGGGGACGGGGAGCGAGG

Function

NR:

description
ras-related protein Rab-38-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614633.2 True 1237 mRNA 0.47 4 10241225 10247265

Neighbor

gene id symbol gene type direction distance location
LOC110531425 LOC106578047 coding downstream 27940 10140623 ~ 10213285 (-)
LOC118965990 NA coding downstream 103516 10135529 ~ 10137709 (-)
LOC118965989 NA coding downstream 110780 10116536 ~ 10130445 (-)
LOC110531429 LOC106578053 coding downstream 252775 9983492 ~ 9988450 (-)
LOC110531417 LOC106578044 coding downstream 892967 9294764 ~ 9348258 (-)
LOC110531436 LOC106578050 coding upstream 15028 10262293 ~ 10273980 (-)
LOC118965991 NA coding upstream 18532 10265797 ~ 10267703 (-)
LOC118965993 NA coding upstream 414125 10661390 ~ 10664564 (-)
LOC110531427 LOC106577878 coding upstream 424723 10671988 ~ 10695563 (-)
LOC110531422 LOC106577877 coding upstream 543928 10791193 ~ 10885360 (-)
G770110 NA non-coding downstream 149 10239840 ~ 10241076 (-)
G770112 NA non-coding downstream 2768 10237998 ~ 10238457 (-)
G770183 NA non-coding downstream 6867 10234116 ~ 10234358 (-)
G770174 NA non-coding downstream 54801 10185229 ~ 10186424 (-)
G770173 NA non-coding downstream 59025 10181637 ~ 10182200 (-)
G770191 NA non-coding upstream 13242 10260507 ~ 10260963 (-)
G770200 NA non-coding upstream 35162 10282427 ~ 10296371 (-)
G770211 NA non-coding upstream 49599 10296864 ~ 10298349 (-)
G770228 NA non-coding upstream 80925 10328190 ~ 10328653 (-)
G770231 NA non-coding upstream 85780 10333045 ~ 10333412 (-)
G768780 NA other downstream 1250519 8982468 ~ 8990706 (-)
LOC110531377 LOC106578102 other downstream 1957901 8277882 ~ 8283359 (-)
LOC118936684 LOC106578100 other downstream 1988470 8221531 ~ 8253809 (-)
G768390 NA other downstream 2049327 8189443 ~ 8191898 (-)
LOC110510419 LOC106560462 other downstream 2127155 8112588 ~ 8155916 (-)
G770225 NA other upstream 127444 10367459 ~ 10375854 (-)
G770549 NA other upstream 725108 10972373 ~ 10974413 (-)
G770627 LOC106577876 other upstream 860563 11107828 ~ 11108159 (-)
G771457 NA other upstream 1381351 11628616 ~ 11629588 (-)
LOC110531452 LOC106577886 other upstream 1451134 11698392 ~ 11701613 (-)

Expression


Co-expression Network