LOC110531427 (LOC106577878)


Basic Information

Item Value
gene id LOC110531427
gene name LOC106577878
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 10671988 ~ 10695563 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987296.1
AGTGCACGGTGCACCAACCAGCCAGCGACACTCCCTCATCCTCAAACTGGACGGTGCAAGGTCTCCCCGGAACTCCCACAGCCGTAGCGGCTGTCAACGGTTTAAAATTGGGTTTCGGTCCAATAATATGGAAAAAGACGGATGGAAATACTGATGACAGTCCGAAAGATCGCCTCGATTTGTACGATGGGCGCCAATGCCTCTGCTTTGGAGAAGGAGATTGGACCAGAACAGTTTCCCGTTAATGAACACTACTTTGGATTGGTCAACTTTGGGAACACCTGCTACTGTAACTCGGTGCTGCAGGCCCTCTACTTCTGCCGTCCGTTCAGGGAGAAGGTCTTGGCCTACAAGGTCCAGCCCAGACGTAAAGAGTCACTGCTCACCTGTCTTTCTGACCTCTTCAACAGCATCGCCACGCAGAAGAAGAAGGTGGGAGTCATCCCTCCCAAGAAGTTCATCTCACGTCTGAGGAAAGAAAACgAGCTGTTTGACAACTACATGCAACAGGATGCCCACGAGTTCCTCAACTACCTCCTCAACACTATCGCTGACCTgctgcaggaggaggagaagagccaGGAGAGACAGCAGAATGGAAAACTGTTACagaacggaggaggaggaggagttggggGCAGTAGCGGGACGGGAGGAGGacagggtgaggagggggagaagacacAGCAGACCTGGGTCCACGAGATCTTCCAGGGAACCCTAACAAACGAGACGCGCTGCCTCAACTGTGAAGCTGTGAGCAGTAAAGACGAAGACTTCCTGGACCTGTCTGTAGATGTTGAGCAGAACACCTCCATCACACACTGTctcagGGGTTTCAgcaacacagagacactatgTAGTGAATACAAGTACTACTGTGAACAGTGTCGGAGTAAACAGGAAGCACAGAAAAGGATGCGTGTGAAGAAGCTGCCTATGATCCTGGCCTTGCATCTGAAGAGGTTTAAATACATGGACCAGCTGCAGCGCTACACCAAGCTGTCCTATCGCGTCGTCTTCCCTCTGGAGCTCCGCCTCTTCAACACCTCAGGAGACGCCACCAACCCCGACCGCATGTACGATCTGGTCGCCGTGGTCGTCCACTGTGGAAGtgGTCCAAAccgtggtcattacatcaccatagTGAAGAGTCATGGGTTCTGGCTCCTGTTTGATGATGACATCGTAGAGAAAATCGACGCCCAGGCGATCGAGGAGTTCTACGGTCTAACGTCGGACATTTCCAAGAACTCTGAGTCCGGTTACATCCTGTTCTACCAGTCCCGGGACTGAACCAGCCAATGGGATTTGGACTCAGCATAGGGAGGGGCTTGGGCTGCCACAGGCCCCGCCCAGCCTACCATCCGTTATAAATATTCAGGCTTTACAGCAGAGCTTTGCACTGTGGAGCACCAGGAAGACGGATGCAGGATCTTCAGCAGACAGGAGCCAACGATGGCCGAGCAACCCATCAGCGTGACAGGATATGACTTCATTGGAGAAGAAGATCAGCGACCAGGGATTGTTATGCTTCGTCATAGTCATCATCATCCTAGTCAAGATCGTCCTGATGGTCTTTCTCCCTTATGATTTTGACGGTAGATTAGAAGATATGTTTGCTTGGCTAGCTCGCCGCTTACATAGCGTGTCGTCATTACTGGTGTCCTTGTCATACATAGTGCCACTGCGGTGGTCTTAAACAGCAGCTTGGTTGGATGAAAAGTAGATCTGCCATTTCCAGAATGTTCTCCTTTTCTTTGGTGTTGTTGGTTTGGAGAGTGGGGTGGAGAGAAGAGTTTGGTCCCTTTTTGCAGCTCAGCAGATCTGGTTGTGTTTATATTATGGTTTGGATGCCAAAAGCTGCACAAATATCTGTTTTTAAAGGGACACGTGTGCTCTCTAGCGCCCCTCTGGCAACAACAGCaaactacaccacacacacacacactacaaaacgCCTGCCAACCACATATGTATGTTGTCTGTCTCCTAATCAAGCAAGTTCCTCCATTGGTGTCAATGGCAgtgtttcaaatggcaccctatttattTATCTAGTGCACTCCAAACGTACTGCACTAGATATGGAGTAGGTTCTCATTTAGCTCCTCCACTTCCTGTCACCTGATCTGAACCTTCCAATCAGAGCCTGTTGTTTTTTTGAACGCACAAGTTAACCAAACATAGCTGTTGTTTGGTCATGTTAAATATGTGTTACACTGCCAGTTGGAGTAACTAACTTCACTCTTTATAGGCTACGTCCCAATATCTATACCAGCACACTGCTAAGTATGCATGCCCAATATATTCTAAGTAGTATGCTAGTGCAGATTTTGGAACGGAACTGATTTATCAACAGGGAGCAACGTGGAATATGGCCCACTGTTCATAAAGCTtctctgagtaggagtgctgatcgagTATTGGTTTGGCCATGTAGATTGTAACCAATCAGATTCTTATGGacagggacctgatcctagatcagaggtTTTATGAATACAGGTCCTGATCCATAGCTCTGACATGGGAGGtgttttatatattatattagctaggACTAGAGTGGGTCCTGTGTTAAGTTGAATGTACAGTAAGGAACTGGCTTCTCATTGGTTGGCCCGTACACAGGTCCTGGGGTCTCAACCTATCCTGAGCAGTACTAGTTATATATCTGCACcacacatggcaccctattccctacatagtgcactattttttacTTTGGCTTGTAGGGTCTCATAGGCGCATTTGGAGTGTGGGAGAGTTAAACTCATTAACTTAGGCTTACTGTAGACCTATCTACCTAGTAAGCACTAGTACACTCCTCTAGCCTACAGGCTACTATCTACCTAGTAAACACAAGTACACTCCTCTAGCCTACAGGCTACTATCTACCTAGTAAACACTAGTACACTCCTCTAGCCTACAGGCTACTATCTACCTAGTAATCCCTAGTACAGTCCTCAGAGCCTATATGGTTCACTCTCTCTGAGTCACAAAGGATACCCtatttcttgtgtgtgtgtgtattaaacaGTGGTTTGCCCCCTTTCTTTCTTTATAGGTTATTGCTGACAGTgcgattgacacacacacacacacacggccaacaCACTTGGGTTGATTTTTGTGTTCGGAGTAAGCGacctgcgaacacacacacacacacacacacacacagacagacagacagagcaggacacAGTACTAAAAAACAGCTTTCTGTAGTGTGTATTCCAGCCTAGCTTAGAGGGACATGAAATGCTGCCTAATGGTCCGTAAATACTGTTCAGCTCTAGCAGCTTCATATGTTACCGACACACTACACTGGTCTGTAATGAATCCTGTTTTACTTCCTGGTTCTGTCTAACGGGgcttctccatctcctctctgtctgcagtGATGTATAAACACTGGTCTGTAATGAATCCTGTTTTACTTCCTGGTTCTAACGGGgcttctccatctcctctctgtctgcagtGATGTATAAACACTGGGTATTTGCTTTCCCCAGTCCAGTCCTTTCACATCAGCgcagatgaaggaaaggaaaCTAGAGGAGAGGACACTGCGTTAAACTATTGTGACTCAGCCCCTCCATGTATGAAAGGAGTTCAAAGGTCATTTTAGCTGTTGGGTCTTTTTAGGTTCAGGTTGAAGTTGACCCccaggcacagatctaggatctgtGGGATCTACCTTTACCATTATTCTTCAACTTGACCAATTAGGTTGGAAACCCTCTAAAA

Function

NR:

description
ubiquitin carboxyl-terminal hydrolase 12-like isoform X1

GO: NA

KEGG:

id description
K11842 USP12_46; ubiquitin carboxyl-terminal hydrolase 12/46

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987296.1 True 3759 mRNA 0.48 10 10671988 10695563

Neighbor

gene id symbol gene type direction distance location
LOC118965993 NA coding downstream 7424 10661390 ~ 10664564 (-)
LOC110531436 LOC106578050 coding downstream 398008 10262293 ~ 10273980 (-)
LOC118965991 NA coding downstream 404285 10265797 ~ 10267703 (-)
LOC110531433 LOC106578048 coding downstream 424723 10241225 ~ 10247265 (-)
LOC110531425 LOC106578047 coding downstream 458703 10140623 ~ 10213285 (-)
LOC110531422 LOC106577877 coding upstream 95630 10791193 ~ 10885360 (-)
LOC110531444 LOC106577924 coding upstream 799979 11495542 ~ 11535439 (-)
LOC110531450 med11 coding upstream 963101 11658664 ~ 11660833 (-)
LOC110531452 LOC106577886 coding upstream 1002829 11698392 ~ 11701613 (-)
LOC110531453 LOC106577884 coding upstream 1046348 11741911 ~ 11750227 (-)
G770408 LOC106577881 non-coding downstream 11832 10658538 ~ 10660156 (-)
G770379 NA non-coding downstream 58353 10612030 ~ 10613635 (-)
G770378 NA non-coding downstream 60038 10611497 ~ 10611950 (-)
G770366 NA non-coding downstream 72745 10598133 ~ 10599243 (-)
G770355 NA non-coding downstream 90807 10580022 ~ 10581181 (-)
G770421 NA non-coding upstream 15905 10711468 ~ 10711978 (-)
G770424 NA non-coding upstream 19754 10715317 ~ 10715741 (-)
G770435 LOC105030861 non-coding upstream 42138 10737701 ~ 10743190 (-)
G770442 NA non-coding upstream 53017 10748580 ~ 10749467 (-)
G770443 LOC103363173 non-coding upstream 55526 10751089 ~ 10755491 (-)
G770225 NA other downstream 296134 10367459 ~ 10375854 (-)
G768780 NA other downstream 1681282 8982468 ~ 8990706 (-)
LOC110531377 LOC106578102 other downstream 2388664 8277882 ~ 8283359 (-)
LOC118936684 LOC106578100 other downstream 2419233 8221531 ~ 8253809 (-)
G768390 NA other downstream 2480090 8189443 ~ 8191898 (-)
G770549 NA other upstream 276810 10972373 ~ 10974413 (-)
G770627 LOC106577876 other upstream 412265 11107828 ~ 11108159 (-)
G771457 NA other upstream 933053 11628616 ~ 11629588 (-)
LOC110532912 LOC106577883 other upstream 1063675 11759145 ~ 11788765 (-)

Expression


Co-expression Network