XLOC_026597 (gps1)


Basic Information

Item Value
gene id XLOC_026597
gene name gps1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 36234060 ~ 36246975 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051814
AAATGCGCGTGCAGTGACTCGCGAAGTGTCAAGGTAGTGACGTCTCCGCGCTGCCTGTCGTCGACCACGCGCACTCTGATGCCCCggatgtgtttgtgtgctctGTTTCTGCAGAGGAGGAGGAGATGCCACTACCCGTGCAGGTCTTTAACTTTCAGGGGTCTGTAGAGCCCATGCAGATAGATGCTGACCCTCAGGAAGACCAGCAGAATGCGCCTGACACCAACTATGTTGTGGAAAACCCGACATTGGATCTAGAGCAGTATGCGTCCAGCTACAGTGGACTGATGAGGATCGAGAGGCTGCAGTTTATTGCAGACCACTGCCCTCAGCTACGAGTGGAAGCACTGAAGATGGCCCTGTCCTTTGTCCAAAGAACCTTTAATGTTGATGTCTATGAAGAAATCCATCGCAAACTCACTGAAGCCACAAGGCAATTCCTGGAAGTGCAAGGAGTCCCAGATGCGGTACCAGAGGGGGCAGTTGAACCCCCTCCTCTCGACACAGCCTGGGCAGAATCTACCAGGAAAAAAGCCCTGCTCAAACTGGAGAAGCTGGATACTGACCTTAAAAACTATAAGGGAAACTCCATCAAAGAAAGCATAAGGAGGGGTCACGATGACCTTGGAGATCACTATCTTGACTGCGGTGACCTCAGCAATGCCCTGAAATGCTACTCCCGAGCCAGAGACTACTGCACTAGCGCCAAGCATGTCATCAACATGTGTCTTAATGTAATCAAGGTTAGCGTTTACCTCCAAAACTGGTCCCATGTACTTAGCTATGTCAGCAAGGCTGAATCCACTCCAGAGATAGCAGAGCAACGAGGAGAACGAGATAGTCAAAACCAAGCTGTTCTAACCAAACTAAAATGTGCTGCAGGCAAGGCAGAACTTGCATCAAGAAAGTATAAACCGGCTGCCAAGTGCTTCCTGCAAGCCTCCTTTGACCACTGCGACTTTCCTGAGtTACTTTCTCCCAGTAATGTAGCTGTGTATGGGGGGCTCTGTGCCCTGGCTACGTTTGACAGACAGGAATTGCAGCGAAATGTCATCTCAAGCAGctcctttaaattatttttagagttGGAACCTCAAGTCCGTGATATTATCTTCAAGTTTTACGAGTCAAAGTATGCATCTTGTCTGAAAATGCTGGATGAAATGAAGGATAATCTCCTCCTAGACATGTATCTGGCCCCTCATGTAAGAACACTGTACACACAAATCAGGAACAGAGCCCTCATACAGTACTTTAGCCCATATGTGTCAGCAGACATGAACAAAATGGCCGTGGCCTTTAACACCacagtggcagctctggaggatgaACTGACCCAACTGATCCTGGAGGGCCTGATCAATGCTCGCATCGACTCCCACAGCAAGATCTTGTACGCCAGGGACGTGGATCAGAGAAGCACAACATTCGAGAAGTCTCTACAGATGGGAAAAGAGTTTCAGAGACGAGCGAAAGCCATGATCCTGCGGGCGGCTGTGCTTCGTAACCAGATACACGTCAAGTCCCCTCCAAGAGAAGGCAGTCAAGGGGAGCTCACACCTGCCAACAGCCAAACACGAATGAGCACCAACATGTGAAGACTCGACCAGATGCCTCTCCTAGGAAAGTACACGGGGCCACTGCCGCATCTTAGGCCCCCTGTTTAGAAATCAATTATTTCCCCGCTGAAGAGAGAAAAATCACAATCTAAAGACTTTAAGTTGGGAAGAAGATCTCTGTTGTCTGTATTAAAGACAAGCACACCCTGTTGCTcaaatgaaaaggaaaaaaaaaaaaaagaaatgcggCACTTAAGCTGTACTGGCCTGTTGTTCTTTGTAAAGAATGCACTTTCCTCTGTATCTTGTGACAAACCTTGATTACACATTGAGAAACCTCATCacaaaacatgcttttaaaataaacatacattcaAAAAG
>TCONS_00051815
GTTAACTTGTATGCAATATTTCCCTTCACATTATCCTTTACTTTGTTATTCCTTTCACCGGCAAAATATAGCTGCCAAATGCGCGTGCAGTGACTCGCGAAGTGTCAAGGTAGTGACGTCTCCGCGCTGCCTGTCGTCGACCACGCGCACTCTGATGCCCCggatgtgtttgtgtgctctGTTTCTGCAGAGGAGGAGGAGATGCCACTACCCGTGCAGGTCTTTAACTTTCAGGGGTCTGTAGAGCCCATGCAGATAGATGCTGACCCTCAGGAAGACCAGCAGAATGCGCCTGACACCAACTATGTTGTGGAAAACCCGACATTGGATCTAGAGCAGTATGCGTCCAGCTACAGTGGACTGATGAGGATCGAGAGGCTGCAGTTTATTGCAGACCACTGCCCTCAGCTACGAGTGGAAGCACTGAAGATGGCCCTGTCCTTTGTCCAAAGAACCTTTAATGTTGATGTCTATGAAGAAATCCATCGCAAACTCACTGAAGCCACAAGGGAAGTGCAAGGAGTCCCAGATGCGGTACCAGAGGGGGCAGTTGAACCCCCTCCTCTCGACACAGCCTGGGCAGAATCTACCAGGAAAAAAGCCCTGCTCAAACTGGAGAAGCTGGATACTGACCTTAAAAACTATAAGGGAAACTCCATCAAAGAAAGCATAAGGAGGGGTCACGATGACCTTGGAGATCACTATCTTGACTGCGGTGACCTCAGCAATGCCCTGAAATGCTACTCCCGAGCCAGAGACTACTGCACTAGCGCCAAGCATGTCATCAACATGTGTCTTAATGTAATCAAGGTTAGCGTTTACCTCCAAAACTGGTCCCATGTACTTAGCTATGTCAGCAAGGCTGAATCCACTCCAGAGATAGCAGAGCAACGAGGAGAACGAGATAGTCAAAACCAAGCTGTTCTAACCAAACTAAAATGTGCTGCAGGATTGGCAGAACTTGCATCAAGAAAGTATAAACCGGCTGCCAAGTGCTTCCTGCAAGCCTCCTTTGACCACTGCGACTTTCCTGAGtTACTTTCTCCCAGTAATGTAGCTGTGTATGGGGGGCTCTGTGCCCTGGCTACGTTTGACAGACAGGAATTGCAGCGAAATGTCATCTCAAGCAGctcctttaaattatttttagagttGGAACCTCAAGTCCGTGATATTATCTTCAAGTTTTACGAGTCAAAGTATGCATCTTGTCTGAAAATGCTGGATGAAATGAAGGATAATCTCCTCCTAGACATGTATCTGGCCCCTCATGTAAGAACACTGTACACACAAATCAGGAACAGAGCCCTCATACAGTACTTTAGCCCATATGTGTCAGCAGACATGAACAAAATGGCCGTGGCCTTTAACACCacagtggcagctctggaggatgaACTGACCCAACTGATCCTGGAGGGCCTGATCAATGCTCGCATCGACTCCCACAGCAAGATCTTGTACGCCAGGGACGTGGATCAGAGAAGCACAACATTCGAGAAGTCTCTACAGATGGGAAAAGAGTTTCAGAGACGAGCGAAAGCCATGATCCTGCGGGCGGCTGTGCTTCGTAACCAGATACACGTCAAGTCCCCTCCAAGAGAAGGCAGTCAAGGGGAGCTCACACCTGCCAACAGCCAAACACGAATGAGCACCAACATGTGAAGACTCGACCAGATGCCTCTCCTAGGAAAGTACACGGGGCCACTGCCGCATCTTAGGCCCCCTGTTTAGAAATCAATTATTTCCCCGCTGAAGAGAGAAAAATCACAATCTAAAGACTTTAAGTTGGGAAGAAGATCTCTGTTGTCTGTATTAAAGACAAGCACACCCTGTTGCTcaaatgaaaaggaaaaaaaaaaaaaagaaatgcggCACTTAAGCTGTACTGGCCTGTTGTTCTTTGTAAAGAATGCACTTTCCTCTGTATCTTGTGACAAACCTTGATTACACATTGAGAAACCTCATCacaaaacatgcttttaaaataaacatacattc
>TCONS_00051816
TATCTGGCCCCTCATGTAAGAACACTGTACACACAAATCAGGAACAGAGCCCTCATACAGTACTTTAGCCCATATGTGTCAGCAGACATGAACAAAATGGCCGTGGCCTTTAACACCacagtggcagctctggaggatgaACTGACCCAACTGATCCTGGAGGGCCTGATCAATGCTCGCATCGACTCCCACAGCAAGGAAATTCGCCAAATGGGAAGTGCATCCCATAATTTGGAACGCAGTAGTGATATGCGGAAAAAGATCTTGTACGCCAGGGACGTGGATCAGAGAAGCACAACATTCGAGAAGTCTCTACAGATGGGAAAAGAGTTTCAGAGACGAGCGAAAGCCATGATCCTGCGGGCGGCTGTGCTTCGTAACCAGATACACGTCAAGTCCCCTCCAAGAGAAGGCAGTCAAGGGGAGCTCACACCTGCCAACAGCCAAACACGAATGAGCACCAACATGTGAAGACTCGACCAGATGCCTCTCCTAGGAAAGTACACGGGGCCACTGCCGCATCTTAGGCCCCCTGTTTAGAAATCAATTATTTCCCCGCTGAAGAGAGAAAAATCACAATCTAAAGACTTTAAGTTGGGAAGAAGATCTCTGTTGTCTGTATTAAAGACAAGCACACCCTGTTGCTcaaatgaaaaggaaaaaaaa
>TCONS_00051817
GTTAACTTGTATGCAATATTTCCCTTCACATTATCCTTTACTTTGTTATTCCTTTCACCGGCAAAATATAGCTGCCAAATGCGCGTGCAGTGACTCGCGAAGTGTCAAGGTAGTGACGTCTCCGCGCTGCCTGTCGTCGACCACGCGCACTCTGATGCCCCggatgtgtttgtgtgctctGTTTCTGCAGAGGAGGAGGAGATGCCACTACCCGTGCAGGTCTTTAACTTTCAGGGGTCTGTAGAGCCCATGCAGATAGATGCTGACCCTCAGGAAGACCAGCAGAATGCGCCTGACACCAACTATGTTGTGGAAAACCCGACATTGGATCTAGAGCAGTATGCGTCCAGCTACAGTGGACTGATGAGGATCGAGAGGCTGCAGTTTATTGCAGACCACTGCCCTCAGCTACGAGTGGAAGCACTGAAGATGGCCCTGTCCTTTGTCCAAAGAACCTTTAATGTTGATGTCTATGAAGAAATCCATCGCAAACTCACTGAAGCCACAAGGGAAGTGCAAGGAGTCCCAGATGCGGTACCAGAGGGGGCAGTTGAACCCCCTCCTCTCGACACAGCCTGGGCAGAATCTACCAGGAAAAAAGCCCTGCTCAAACTGGAGAAGCTGGATACTGACCTTAAAAACTATAAGGGAAACTCCATCAAAGAAAGCATAAGGAGGGGTCACGATGACCTTGGAGATCACTATCTTGACTGCGGTGACCTCAGCAATGCCCTGAAATGCTACTCCCGAGCCAGAGACTACTGCACTAGCGCCAAGCATGTCATCAACATGTGTCTTAATGTAATCAAGGTTAGCGTTTACCTCCAAAACTGGTCCCATGTACTTAGCTATGTCAGCAAGGCTGAATCCACTCCAGAGATAGCAGAGCAACGAGGAGAACGAGATAGTCAAAACCAAGCTGTTCTAACCAAACTAAAATGTGCTGCAGGATTGGCAGAACTTGCATCAAGAAAGTATAAACCGGCTGCCAAGTGCTTCCTGCAAGCCTCCTTTGACCACTGCGACTTTCCTGAGtTACTTTCTCCCAGTAATGTAGCTGTGTATGGGGGGCTCTGTGCCCTGGCTACGTTTGACAGACAGGAATTGCAGCGAAATGTCATCTCAAGCAGctcctttaaattatttttagagttGGAACCTCAAGTCCGTGATATTATCTTCAAGTTTTACGAGTCAAAGTATGCATCTTGTCTGAAAATGCTGGATGAAATGAAGGATAATCTCCTCCTAGACATGTATCTGGCCCCTCATGTAAGAACACTGTACACACAAATCAGGAACAGAGCCCTCATACAGTACTTTAGCCCATATGTGTCAGCAGACATGAACAAAATGGCCGTGGCCTTTAACACCacagtggcagctctggaggatgaACTGACCCAACTGATCCTGGAGGGCCTGATCAATGCTCGCATCGACTCCCACAGCAAGGAAATTCGCCAAATGGGAAGTGCATCCCATAATTTGGAACGCAGTAGTGATATGCGGAAAAAGATCTTGTACGCCAGGGACGTGGATCAGAGAAGCACAACATTCGAGAAGTCTCTACAGATGGGAAAAGAGTTTCAGAGACGAGCGAAAGCCATGATCCTGCGGGCGGCTGTGCTTCGTAACCAGATACACGTCAAGTCCCCTCCAAGAGAAGGCAGTCAAGGGGAGCTCACACCTGCCAACAGCCAAACACGAATGAGCACCAACATGTGA
>TCONS_00051818
ATTCTTCTCCGTCGCCCTCCGCAGCACGAGAGCTGGTAGAGGTAGCACACCGAGGCGAAGCGCAGGTGTTTACGGTGTTAAATGCTCCTGTACGGCAGCCGTTGGCTCGTCTAGCGTGAGCTCGGGTCTGTAGAGCCCATGCAGATAGATGCTGACCCTCAGGAAGACCAGCAGAATGCGCCTGACACCAACTATGTTGTGGAAAACCCGACATTGGATCTAGAGCAGTATGCGTCCAGCTACAGTGGACTGATGAGGATCGAGAGGCTGCAGTTTATTGCAGACCACTGCCCTCAGCTACGAGTGGAAGCACTGAAGATGGCCCTGTCCTTTGTCCAAAGAACCTTTAATGTTGATGTCTATGAAGAAATCCATCGCAAACTCACTGAAGCCACAAGGCAATTCCTGGAAGTGCAAGGAGTCCCAGATGCGGTACCAGAGGGGGCAGTTGAACCCCCTCCTCTCGACACAGCCTGGGCAGAATCTACCAGGAAAAAAGCCCTGCTCAAACTGGAGAAGCTGGATACTGACCTTAAAAACTATAAGGGAAACTCCATCAAAGAAAGCATAAGGAGGGGTCACGATGACCTTGGAGATCACTATCTTGACTGCGGTGACCTCAGCAATGCCCTGAAATGCTACTCCCGAGCCAGAGACTACTGCACTAGCGCCAAGCATGTCATCAACATGTGTCTTAATGTAATCAAGGTTAGCGTTTACCTCCAAAACTGGTCCCATGTACTTAGCTATGTCAGCAAGGCTGAATCCACTCCAGAGATAGCAGA
>TCONS_00051819
GTTTCTGCAGAGGAGGAGGAGATGCCACTACCCGTGCAGGTCTTTAACTTTCAGGAGAGTCTTCTTCAGTCAGGGTGGATGGATGCTGAAGAGCAGGATCAGGGTAGAATCAGGGAAAGCTCAGGTGTAGAGCTGAATGTCTACTCTCAAACAGGCATGTCTGACCAATACATGGAGTTTACAGTGAGATCCAGTGTGTGCAGCTTCAGCTTTTCTTCACACTCTCTGGAGGGGTCTGTAGAGCCCATGCAGATAGATGCTGACCCTCAGGAAGACCAGCAGAATGCGCCTGACACCAACTATGTTGTGGAAAACCCGACATTGGATCTAGAGCAGTATGCGTCCAGCTACAGTGGACTGATGAGGATCGAGAGGCTGCAGTTTATTGCAGACCACTGCCCTCAGCTACGAGTGGAAGCACTGAAGATGGCCCTGTCCTTTGTCCAAAGAACCTTTAATGTTGATGTCTATGAAGAAATCCATCGCAAACTCACTGAAGCCACAAGGCAATTCCTGGAAGTGCAAGGAGTCCCAGATGCGGTACCAGAGGGGGCAGTTGAACCCCCTCCTCTCGACACAGCCTGGGCAGAATCTACCAGGAAAAAAGCCCTGCTCAAACTGGAGAAGCTGGATACTGACCTTAAAAACTATAAGGGAAACTCCATCAAAGAAAGCATAAGGAGGGGTCACGATGACCTTGGAGATCACTATCTTGACTGC

Function

symbol description
gps1 Predicted to act upstream of or within protein deneddylation. Predicted to be located in cytoplasm. Predicted to be part of COP9 signalosome. Orthologous to human GPS1 (G protein pathway suppressor 1).

GO:

id name namespace
GO:0000338 protein deneddylation biological_process
GO:0008180 COP9 signalosome cellular_component

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-041111-240 Predicted to act upstream of or within protein deneddylation. Predicted to be located in cytoplasm. Predicted to be part of COP9 signalosome. Orthologous to human GPS1 (G protein pathway suppressor 1).

Ensembl:

ensembl_id ENSDARG00000040650

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051814 False 1940 mRNA 0.48 14 36234060 36246899
TCONS_00051815 False 2001 mRNA 0.47 14 36234066 36246975
TCONS_00051816 False 666 processed_transcript 0.48 5 36234207 36239041
TCONS_00051817 False 1728 mRNA 0.49 15 36234402 36246975
TCONS_00051818 False 785 processed_transcript 0.51 6 36240312 36246722
TCONS_00051819 True 720 processed_transcript 0.50 6 36241668 36246795

Neighbor

gene id symbol gene type direction distance location
XLOC_026596 csnk1da coding downstream 23716 36173203 ~ 36210344 (-)
XLOC_026595 BX897685.1 coding downstream 62092 36170943 ~ 36171968 (-)
XLOC_026594 engase coding downstream 80469 36136530 ~ 36153591 (-)
XLOC_026593 coil coding downstream 106826 36119782 ~ 36127234 (-)
XLOC_026592 rab11fip4a coding downstream 118706 36023268 ~ 36115354 (-)
XLOC_026598 rac3a coding upstream 1876 36248851 ~ 36260102 (-)
XLOC_026599 prkar1aa coding upstream 15618 36262593 ~ 36272670 (-)
XLOC_026600 NA coding upstream 73264 36320239 ~ 36323625 (-)
XLOC_026601 gna13b coding upstream 85604 36332579 ~ 36364903 (-)
XLOC_026602 cog1 coding upstream 154130 36401105 ~ 36420397 (-)
XLOC_026588 NA non-coding downstream 659609 35565128 ~ 35574451 (-)
XLOC_026585 NA non-coding downstream 1285999 34947402 ~ 34948061 (-)
XLOC_026580 NA non-coding downstream 1592087 34641048 ~ 34641973 (-)
XLOC_026572 NA non-coding downstream 2092879 34139637 ~ 34141181 (-)
XLOC_026558 BX649502.11 non-coding downstream 2147577 34086041 ~ 34086483 (-)
XLOC_026606 NA non-coding upstream 336125 36583100 ~ 36587136 (-)
XLOC_026612 FO744883.1 non-coding upstream 509058 36756033 ~ 36756149 (-)
XLOC_026617 NA non-coding upstream 706650 36953625 ~ 36954088 (-)
XLOC_026618 CT573704.1 non-coding upstream 720896 36967871 ~ 36967993 (-)

Expression


Co-expression Network