LOC110531441 (LOC106577923)


Basic Information

Item Value
gene id LOC110531441
gene name LOC106577923
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 11478157 ~ 11493326 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987306.1
GAAATGCATTTTGGGTAATCTCAGTGGTTCgcgtgcggggggggggggtgttcaagCGCTCGGCTTCTGCtagtaaataaacacacacacgcctaaTTTATCAGTTAACACAATCAGACTTGGCAGTTAGCGAACAACCGTATTCTGTCTCGTGCTGTGAGCTAATAGCTAACGGAAGCTAACACATTCTTAAACACGTCGCCTGCAACCCAGATCTGTTGACAATCGGAAAGGATTAGATTTGATCCATCATCTAACGAGAAGGAAACCGGGTGGAGTGGAGCTGGAAAATGGAAAAGCAGTTGTTTGGAGGAGTCGCCGGTGGAGATGGCACTGCGCAGCCGGGAGTACCGAATCGAAACAAGCCTCGGACATTGGCCACCGCTGGGTCGAAACAGGATAGCGTGGAGACATTGGACAGtcCTACAGGTTCTCATGTAGAATGGTGTAAGCAGCTGATAGCAGCCACCATCTCTTGCCAGATATCATCTGTACCCGCTGACACTGCATCCGGAGACTGCAagCCTCCAAGAGACGGAACCAAGCAGGTCCAGACGGATGAGGTTCCACTGGTACCCGGAGAGACCATCAAGGCTGTGGCCAAGGATGTGATGTACATCTGCCCCTTCACGGGTTTGGTGACCGGAACCCTCACCAGCACCAACTATAAACTATACTTTATCAGCCTGGAGAGGGATACTCCGTTCATCCTGGATGTGAACCTGGGAGCGATCAGCCGTCTGGAGACCATCAGTGTTCAGAGTCATGGAGAGAACACAAGGGGCATGGAGATAGTCTGTAAGgACATGCGTAGTCCCAGATTTGCCTATAAGGAGGATGCCAGCCAACCAGAGATAGTGGAGGTTCTGGCCAAACATGCCTTCCCCCTGTCAAACGACCTGCCCCTGTTTGCCTTCCTGTATAAGGAGGAGTTTCCTGTGGATGGGTGGAAGGTGTATGACCCCATGGCAGAGTACAAGAGACAGGGTCTCCCCAACGAGAGTTGGACCATCAGCAAGATGAACAGTAGTTATGAGGTGTGTGACACCTACCCTGCCCTGGTCGTCATCCCCACCAGCATCAAGGACGACCACCTCAAAGGAGTGGTAGCCTTTAGGGCCAGGCATCGCATACCgGTGTTATCGTGGATCCACCCGGAGAGCCAGGCCACTATAGTCCGTAGCAGTCAGCCTTTAGTGGGCCCCTCTGACCGGCGTTGTAAGGAGGACGAGAGATACCTCCAGACCATCATGGATGCCAACGCTCAGTCTCACAAACTCACCATCTTTGACGCCCGACAGAGCAGCGTGGCAGACAACAACAAGGTgCTAAGGATGGTGGTTATGAGAGTGAGAGTTTCTATCCCAACGTAGAACTCAACTTCCTGGAGATCCCCAACATCCACGTGATGAGAGAGTCACTGAGGAAACTGAAGGAAGTGGTCTACCCTAGTATAGATGAGGCTCACTGGCACTCTGCAGTTGACCAGACACACTGGCTAGAGTAC
>XM_036987304.1
TTGGGTAATCTCAGTGGTTCgcgtgcggggggggggggtgttcaagCGCTCGGCTTCTGCtagtaaataaacacacacacgcctaaTTTATCAGTTAACACAATCAGACTTGGCAGTTAGCGAACAACCGTATTCTGTCTCGTGCTGTGAGCTAATAGCTAACGGAAGCTAACACATTCTTAAACACGTCGCCTGCAACCCAGATCTGTTGACAATCGGAAAGGATTAGATTTGATCCATCATCTAACGAGAAGGAAACCGGGTGGAGTGGAGCTGGAAAATGGAAAAGCAGTTGTTTGGAGGAGTCGCCGGTGGAGATGGCACTGCGCAGCCGGGAGTACCGAATCGAAACAAGCCTCGGACATTGGCCACCGCTGGGTCGAAACAGGATAGCGTGGAGACATTGGACAGtcCTACAGGTTCTCATGTAGAATGGTGTAAGCAGCTGATAGCAGCCACCATCTCTTGCCAGATATCATCTGTACCCGCTGACACTGCATCCGGAGACTGCAagCCTCCAAGAGACGGAACCAAGCAGGTCCAGACGGATGAGGTTCCACTGGTACCCGGAGAGACCATCAAGGCTGTGGCCAAGGATGTGATGTACATCTGCCCCTTCACGGGTTTGGTGACCGGAACCCTCACCAGCACCAACTATAAACTATACTTTATCAGCCTGGAGAGGGATACTCCGTTCATCCTGGATGTGAACCTGGGAGCGATCAGCCGTCTGGAGACCATCAGTGTTCAGAGTCATGGAGAGAACACAAGGGGCATGGAGATAGTCTGTAAGgACATGCGTAGTCCCAGATTTGCCTATAAGGAGGATGCCAGCCAACCAGAGATAGTGGAGGTTCTGGCCAAACATGCCTTCCCCCTGTCAAACGACCTGCCCCTGTTTGCCTTCCTGTATAAGGAGGAGTTTCCTGTGGATGGGTGGAAGGTGTATGACCCCATGGCAGAGTACAAGAGACAGGGTCTCCCCAACGAGAGTTGGACCATCAGCAAGATGAACAGTAGTTATGAGGTGTGTGACACCTACCCTGCCCTGGTCGTCATCCCCACCAGCATCAAGGACGACCACCTCAAAGGAGTGGTAGCCTTTAGGGCCAGGCATCGCATACCgGTGTTATCGTGGATCCACCCGGAGAGCCAGGCCACTATAGTCCGTAGCAGTCAGCCTTTAGTGGGCCCCTCTGACCGGCGTTGTAAGGAGGACGAGAGATACCTCCAGACCATCATGGATGCCAACGCTCAGTCTCACAAACTCACCATCTTTGACGCCCGACAGAGCAGCGTGGCAGACAACAACAAGgCTAAGGATGGTGGTTATGAGAGTGAGAGTTTCTATCCCAACGTAGAACTCAACTTCCTGGAGATCCCCAACATCCACGTGATGAGAGAGTCACTGAGGAAACTGAAGGAAGTGGTCTACCCTAGTATAGATGAGGCTCACTGGCACTCTGCAGTTGACCAGACACACTGGCTAGAGTACATACGGCTGCTCCTGGCGGGCGCCGTGCGTATAGCTGACAAGCTGGAGTCTGGTAAGACCTCTGTGATGGTCCACTGTAGTGATGGGTGGGACCGGACGGCCCAGCTCACCTCTCTGGCCATGCTGATGCTGGACAGCCACTACCGCACCCTGAGAGGATTCCAGGTGCTGTTGGAGAAGGAGTGGATCAGCTTCGGACACAAGTTTGCTGCGCGTGTGGGTCATGGGGATGAGAACCATGCCAACTCGGAGAGATCGCCTCTCTTTATCCAGTTTATAGACTGTGTCTGGCAGATGAACAGACAGTTCCCTGCAGCGTTTGAGTTTAATGAGTTGTTCCTGATAACCATTCTGGACCACCTCTATAGTTGTCTATTTGGTACATTCCTCTACGACAGCGAACAGGAAAGAGTAGCCAAGGAAGTCCAGACCAAGACAGTCTCTCTGTGGTCCTATATCAACAGTCAACCAGAGGACTTCACCAACCCGTTCTATGTGGACTATGAGCACCAGGTCTTGTACCCTTTAGCTAGCGTCAGACACCTGGAGCTGTGGACTGGGTACTATGTACGATGGAACCCCCGTATGAGGCCGCAGATGCCGGTGCACCAGAACCTGAAGGAGCTGTTGTTCCTGAGAGCAGAGTTACAGAGGAAGGTAGACGAGTTGGAGAGGGAAGCATCTTCATCACGTGGCTCTCTCTCGTCTTCATCAGAACACACATCATCACCCTCACACAGCGGGGGCACGCCCCTACACACCATTGTttaatacagtacacacataccgttgtctaacacacacactcacctgaaTGCAGTCCCCAACACAGAACTGAACACACACCTGAATGCAGTCCCCAACACAGAACTGAACACACACCTGAATGCAGTCCCCAACACAGAACTGAATGCAGTCCCCAACACAGAACTGAATGCAGTCCCCAACACAGAACTGAACACACACACGTAACCACTTGTTTGTTCGTCTTTGTATTCCTGAATCACTTTTTGACTTCGTGTTTTTATCATAAAGAACTAGAAAGAGTTTAACTTGAGAAACGAGGTACACGTTAACAAAGTTTcattctttttgttgttgtatttaaaATAAGGGAAAAGAAATGAGGTAATGAAAAAAGCACCATAGTATTTGGTGTGTATTTTAACATAGAACATATGAATAGACTGAACTAACATTTCTACCTACCTAAAGTATGGTACTCTTTACAATTGACGACAGTTTCCAATATTAGAAGTTGAATTCATAGACGACGTGTAGAAATATCAAGTGCACTTTTTTTAAACACATTTGAGTAAGCATGTTATATCAAGTGGATCATTaaggatacatcccaaatggtaccctatgtagggtggcatttgggacataACCTAAATAAGAGCTCTGTATGTACTACTTAACCTTATCCAGCTGTGCCATAACTGGTACCTTGTAATATGTGTCCCCTATTCCTGTCCTTCCCTTGTAATGTACCCTGTCATGTGTTCCTATCAACATGTTCCATTCAAAGTCTGTGCACTCTTAAAAAAATGTCATCTTTGCCTTTCTATTCAATGTGTATTTGTTGCTTATCCACACTGTTATTGGTcataggctgtgtttacacaggcagcgcaattctgatcttttgctcAGTTGACAAATCTGATCTGATGAATCAGTGGAACAGATTTAGGcaaccatgtttgtttgtttttttccccacgTGATTTACTTCTACTCTGCTGAT
>XM_036987305.1
AGATGGCACTGCGCAGCCGGGAGTACCGAATCGAAACAAGCCTCGGACATTGGCCACCGCTGGGTCGAAACAGGATAGCGTGGAGACATTGGACAGCCTCCAAGAGACGGAACCAAGCAGGTCCAGACGGATGAGGTTCCACTGGTACCCGGAGAGACCATCAAGGCTGTGGCCAAGGATGTGATGTACATCTGCCCCTTCACGGGTTTGGTGACCGGAACCCTCACCAGCACCAACTATAAACTATACTTTATCAGCCTGGAGAGGGATACTCCGTTCATCCTGGATGTGAACCTGGGAGCGATCAGCCGTCTGGAGACCATCAGTGTTCAGAGTCATGGAGAGAACACAAGGGGCATGGAGATAGTCTGTAAGgACATGCGTAGTCCCAGATTTGCCTATAAGGAGGATGCCAGCCAACCAGAGATAGTGGAGGTTCTGGCCAAACATGCCTTCCCCCTGTCAAACGACCTGCCCCTGTTTGCCTTCCTGTATAAGGAGGAGTTTCCTGTGGATGGGTGGAAGGTGTATGACCCCATGGCAGAGTACAAGAGACAGGGTCTCCCCAACGAGAGTTGGACCATCAGCAAGATGAACAGTAGTTATGAGGTGTGTGACACCTACCCTGCCCTGGTCGTCATCCCCACCAGCATCAAGGACGACCACCTCAAAGGAGTGGTAGCCTTTAGGGCCAGGCATCGCATACCgGTGTTATCGTGGATCCACCCGGAGAGCCAGGCCACTATAGTCCGTAGCAGTCAGCCTTTAGTGGGCCCCTCTGACCGGCGTTGTAAGGAGGACGAGAGATACCTCCAGACCATCATGGATGCCAACGCTCAGTCTCACAAACTCACCATCTTTGACGCCCGACAGAGCAGCGTGGCAGACAACAACAAGgCTAAGGATGGTGGTTATGAGAGTGAGAGTTTCTATCCCAACGTAGAACTCAACTTCCTGGAGATCCCCAACATCCACGTGATGAGAGAGTCACTGAGGAAACTGAAGGAAGTGGTCTACCCTAGTATAGATGAGGCTCACTGGCACTCTGCAGTTGACCAGACACACTGGCTAGAGTACATACGGCTGCTCCTGGCGGGCGCCGTGCGTATAGCTGACAAGCTGGAGTCTGGTAAGACCTCTGTGATGGTCCACTGTAGTGATGGGTGGGACCGGACGGCCCAGCTCACCTCTCTGGCCATGCTGATGCTGGACAGCCACTACCGCACCCTGAGAGGATTCCAGGTGCTGTTGGAGAAGGAGTGGATCAGCTTCGGACACAAGTTTGCTGCGCGTGTGGGTCATGGGGATGAGAACCATGCCAACTCGGAGAGATCGCCTCTCTTTATCCAGTTTATAGACTGTGTCTGGCAGATGAACAGACAGTTCCCTGCAGCGTTTGAGTTTAATGAGTTGTTCCTGATAACCATTCTGGACCACCTCTATAGTTGTCTATTTGGTACATTCCTCTACGACAGCGAACAGGAAAGAGTAGCCAAGGAAGTCCAGACCAAGACAGTCTCTCTGTGGTCCTATATCAACAGTCAACCAGAGGACTTCACCAACCCGTTCTATGTGGACTATGAGCACCAGGTCTTGTACCCTTTAGCTAGCGTCAGACACCTGGAGCTGTGGACTGGGTACTATGTACGATGGAACCCCCGTATGAGGCCGCAGATGCCGGTGCACCAGAACCTGAAGGAGCTGTTGTTCCTGAGAGCAGAGTTACAGAGGAAGGTAGACGAGTTGGAGAGGGAAGCATCTTCATCACGTGGCTCTCTCTCGTCTTCATCAGAACACACATCATCACCCTCACACAGCGGGGGCACGCCCCTACACACCATTGTttaatacagtacacacataccgttgtctaacacacacactcacctgaaTGCAGTCCCCAACACAGAACTGAACACACACCTGAATGCAGTCCCCAACACAGAACTGAACACACACCTGAATGCAGTCCCCAACACAGAACTGAATGCAGTCCCCAACACAGAACTGAATGCAGTCCCCAACACAGAACTGAACACACACACGTAACCACTTGTTTGTTCGTCTTTGTATTCCTGAATCACTTTTTGACTTCGTGTTTTTATCATAAAGAACTAGAAAGAGTTTAACTTGAGAAACGAGGTACACGTTAACAAAGTTTcattctttttgttgttgtatttaaaATAAGGGAAAAGAAATGAGGTAATGAAAAAAGCACCATAGTATTTGGTGTGTATTTTAACATAGAACATATGAATAGACTGAACTAACATTTCTACCTACCTAAAGTATGGTACTCTTTACAATTGACGACAGTTTCCAATATTAGAAGTTGAATTCATAGACGACGTGTAGAAATATCAAGTGCACTTTTTTTAAACACATTTGAGTAAGCATGTTATATCAAGTGGATCATTaaggatacatcccaaatggtaccctatgtagggtggcatttgggacataACCTAAATAAGAGCTCTGTATGTACTACTTAACCTTATCCAGCTGTGCCATAACTGGTACCTTGTAATATGTGTCCCCTATTCCTGTCCTTCCCTTGTAATGTACCCTGTCATGTGTTCCTATCAACATGTTCCATTCAAAGTCTGTGCACTCTTAAAAAAATGTCATCTTTGCCTTTCTATTCAATGTGTATTTGTTGCTTATCCACACTGTTATTGGTcataggctgtgtttacacaggcagcgcaattctgatcttttgctcAGTTGACAAATCTGATCTGATGAATCAGTGGAACAGATTTAGGcaaccatgtttgtttgtttttttccccacgTGATTTACTTCTACTCTGCTGAT

Function

NR:

description
myotubularin-related protein 1-like

GO: NA

KEGG:

id description
K18081 MTMR1_2; myotubularin-related protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987306.1 False 1507 mRNA 0.52 10 11478157 11487344
XM_036987304.1 False 3248 mRNA 0.48 16 11478167 11493326
XM_036987305.1 True 2830 mRNA 0.48 15 11478482 11493326

Neighbor

gene id symbol gene type direction distance location
LOC110531442 LOC106577925 coding upstream 3303 11419722 ~ 11474854 (+)
LOC110531443 LOC106592511 coding upstream 66604 11391262 ~ 11411553 (+)
LOC110531434 LOC106591785 coding upstream 352633 11116759 ~ 11125524 (+)
LOC110532911 LOC106577876 coding upstream 368615 10886227 ~ 11109542 (+)
LOC110531423 NA coding upstream 709401 10751036 ~ 10772240 (+)
LOC110531445 hmgb3 coding downstream 51762 11545088 ~ 11551356 (+)
LOC110531449 LOC105904870 coding downstream 66672 11559998 ~ 11654454 (+)
LOC110531447 LOC106577888 coding downstream 167517 11660843 ~ 11679701 (+)
LOC110531448 LOC100380705 coding downstream 189168 11682494 ~ 11697329 (+)
LOC110531451 cq049 coding downstream 208671 11701997 ~ 11711985 (+)
G770893 NA non-coding upstream 19288 11458318 ~ 11458869 (+)
G770862 NA non-coding upstream 62585 11415118 ~ 11415572 (+)
G770861 NA non-coding upstream 64422 11413535 ~ 11413735 (+)
G770858 NA non-coding upstream 65834 11412122 ~ 11412323 (+)
G770759 NA non-coding upstream 88563 11388800 ~ 11389594 (+)
G770929 NA non-coding downstream 41736 11535062 ~ 11535408 (+)
G770939 NA non-coding downstream 58549 11551875 ~ 11552672 (+)
G770940 NA non-coding downstream 59548 11552874 ~ 11553138 (+)
G770941 NA non-coding downstream 59910 11553236 ~ 11553449 (+)
G771079 NA non-coding downstream 151193 11644519 ~ 11645208 (+)
G769713 NA other upstream 694749 10783091 ~ 10783408 (+)
G769681 NA other upstream 792135 10685137 ~ 10686022 (+)
G769489 LOC107579696 other upstream 1155423 10321983 ~ 10322734 (+)
G769335 NA other upstream 1496903 9980226 ~ 9981254 (+)
G768321 NA other upstream 2245671 9232160 ~ 9232486 (+)
LOC110531469 LOC106577901 other downstream 833700 12317006 ~ 12406007 (+)
G772033 LOC106577932 other downstream 1445136 12938462 ~ 12963571 (+)
LOC110531509 tmm85 other downstream 1593705 13087000 ~ 13095070 (+)
G772241 LOC106577945 other downstream 1898471 13391797 ~ 13392721 (+)
LOC110531525 LOC106577958 other downstream 2157996 13651265 ~ 13667682 (+)

Expression


Co-expression Network