XLOC_026598 (rac3a)


Basic Information

Item Value
gene id XLOC_026598
gene name rac3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 36248851 ~ 36260102 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051820
AGCCAAATGTAATATTCGGTGTTTAATCAATAGCCTATTATAAAATCTTTTCGCAAGCGCGTCGTATAAAGTGACAGAGAAACCAGCAGACGGCGCCTCACAAGACTTCCGGAAAAGCACGAAGCATCTATTCGTGTTTTTTCGGAATTATCGTGAAATACCCCCGACTGCCACTCACCGCTGGTGCTGCTGCAGCCGAACAGCATTAGTACCAGCCCACGGGTACCTCCACATCTCATTTCAGGCTATTCCTTCAGATTCCTCGCTCGTCGGAGACCACTCGTGAACTGCAAATGCAAGCCATCAAGTGTGTTGTTGTCGGCGACGGTGCCGTGGGTAAGACGTGCCTGCTCATCAGCTACACCACTAATGCCTTCCCAGGAGAGTATATACCCACAGTGTTCGACAATTACTCTGCCAATGTTATGGTGGATGGCAAGCCTGTCAACTTAGGCCTTTGGGACACAGCAGGACAAGAGGACTATGATCGCCTTAGACCACTTTCATACCCCCAAACGGATGTGTTTTTAATTTGCTTCTCACTGGTGAGCCCTGCATCCTTTGAGAACGTCAGGGCAAAGTGGTACCCTGAGGTTCGCCATCACTGTCCTAACACCCCCATCATACTTGTGGGCACCAAACTCGACCTGCGGGATGACAAGGACACTATTGAACGTCTACGGGATAAGAAACTAGCTCCTATCACTTACCCTCAAGGTCTTGCTATGGCTAGAGAAATCGGTGCTGTGAAGTATCTGGAGTGTTCTGCTCTCACGCAGCGGGGTTTAAAAACCGTCTTTGATGAGGCCATCCGTGCTGTTTTGTGCCCTCCTCCTGTGAAGAAGCGGGGCAAGAAGTGTACTGTGTTTTGAGAAACATCTCGGCCATTTCCTTCATCTATATGCCATGCAAACAGCAAGCTCTTACTGTTCAGTTCTGCTGATACGAACTGATCAGTCCACTTTATGAGGTGTCAAAACGCATTTTTCTGTCTTATGTCTGATGCAACAGATCAACATAAAAATGCCAAATTTGCTTTGTTTGCGTTTTTATTCAGATTTGCCTTAAGAGTGGAGGGGGTGACGTAAGGCCAcgacgtgcgtgtgtgtgtgtgtgtcaggatgaGTTATTAGTTACTGAAAATCAAGCATAGCGAGTTCTCTGCCCCGTTCCAACACAAGTTAAATTTCTTCAGAGCTTATTGTGTGGAAATTGTTGCTGTAAATATTTTACCTGCAGCAGGTACCGTTCCCTTTGGGGATGGTGAATGTGTCAGAAGACTGTGTAAATAATAGCTTTTGCAAGGTAAATGCGTGGCCATGGTCGGTTCTCTTACCTGAGGGGTGACTGTAAAAACCTTTTACTTTTTAGTATTTTACTTTTTGCCTGTTCAACATTTCATACTGTACCTGCGTTTATCTGTGAATGTACTGTATGTCAATGACAGAAATATTACACTCCTGTGAAATACtataacaaaaaatactatacaaaataaactgtaatCACAACTGGACTGCATATACTGCAGATGAAAGTAATTTTGTGTAGACTGTATGTTACACTAAAagcttgttttaattttaattttaatttcctaTATATTTTGATATGATTGAAGGACAATGAAATGTGCCATTACTGATTAGGGCTAAAATAATGCccgcttgttgttgttgtttgtttgtttttttgggaaGTGTTCATATATTCCTTTGATTTGATTACATGATTAATCTTACAGTTTTAATGAGATAAAATGTGTCTGCTCTGATTGAGGATTTATGTTTTCAGGACTGTTTGTGATTTATTGATGTAAAGACTGAAATTAAACTACTGGCAGATATAG

Function

symbol description
rac3a Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including cytoskeleton organization; regulation of actin cytoskeleton organization; and regulation of cell shape. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and neuron projection. Is expressed in blastomere; hatching gland; nervous system; somite; and trigeminal placode. Orthologous to human RAC3 (Rac family small GTPase 3).

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0007015 actin filament organization biological_process
GO:0030865 cortical cytoskeleton organization biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0008360 regulation of cell shape biological_process
GO:0007163 establishment or maintenance of cell polarity biological_process
GO:0042995 cell projection cellular_component
GO:0043005 neuron projection cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005938 cell cortex cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0031982 vesicle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0019901 protein kinase binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-256 Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including cytoskeleton organization; regulation of actin cytoskeleton organization; and regulation of cell shape. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and neuron projection. Is expressed in blastomere; hatching gland; nervous system; somite; and trigeminal placode. Orthologous to human RAC3 (Rac family small GTPase 3).

Ensembl:

ensembl_id ENSDARG00000090062

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051820 True 1849 mRNA 0.42 6 36248851 36260102

Neighbor

gene id symbol gene type direction distance location
XLOC_026597 gps1 coding downstream 1876 36234060 ~ 36246975 (-)
XLOC_026596 csnk1da coding downstream 38507 36173203 ~ 36210344 (-)
XLOC_026595 BX897685.1 coding downstream 76883 36170943 ~ 36171968 (-)
XLOC_026594 engase coding downstream 95260 36136530 ~ 36153591 (-)
XLOC_026593 coil coding downstream 121617 36119782 ~ 36127234 (-)
XLOC_026599 prkar1aa coding upstream 2491 36262593 ~ 36272670 (-)
XLOC_026600 NA coding upstream 60137 36320239 ~ 36323625 (-)
XLOC_026601 gna13b coding upstream 72477 36332579 ~ 36364903 (-)
XLOC_026602 cog1 coding upstream 141003 36401105 ~ 36420397 (-)
XLOC_026603 rogdi coding upstream 167886 36427988 ~ 36440705 (-)
XLOC_026588 NA non-coding downstream 674400 35565128 ~ 35574451 (-)
XLOC_026585 NA non-coding downstream 1300790 34947402 ~ 34948061 (-)
XLOC_026580 NA non-coding downstream 1606878 34641048 ~ 34641973 (-)
XLOC_026572 NA non-coding downstream 2107670 34139637 ~ 34141181 (-)
XLOC_026558 BX649502.11 non-coding downstream 2162368 34086041 ~ 34086483 (-)
XLOC_026606 NA non-coding upstream 322998 36583100 ~ 36587136 (-)
XLOC_026612 FO744883.1 non-coding upstream 495931 36756033 ~ 36756149 (-)
XLOC_026617 NA non-coding upstream 693523 36953625 ~ 36954088 (-)
XLOC_026618 CT573704.1 non-coding upstream 707769 36967871 ~ 36967993 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_06989298_06993467 RAC3B, RAC3, RAC3A, RAC1, RAC1A, RAC1B, RAC3.S, RAC1.L coding CI01000046 null 6989298 ~ 6994143 (+)