LOC110531450 (med11)


Basic Information

Item Value
gene id LOC110531450
gene name med11
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 11658664 ~ 11660833 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614655.2
AATATTTTACGCACCTAATGTGTTGACGTTATTTCTATGCGCCCTTTCTCAGAAGGGCTTTTGATGATGTTCGCTTTCTTTAGTGTGTGGTTTTGACACGAATGAGTTTGGCAGCATTTTGGATTAATGCATTGAGTTAACAAACTGTTAGCTACGATATTGTGCCGTAGCCGTTTCTGTGAAGTTTCGTGCTCTGATTATATTACTCCCAGTGAGTGAAAGTGATGGCGAATGACCGACTGAGAGCTTTGGAGGAGGTTGAGAATCAAATTGCAACGATTCTGCAGTGCGCCGGTAACATCGTGTTGGAGCTGTCTAAAGACAAGCACAATGCCAGTTTCCTGGACAGACAGCTTAGTCAGTTTACTGGCTCGGTCAGCAGAGTGGAGACTGAACTCAGCTCACAGATCAAATACCTCACACAGgTTGCCACAGGCCAGCCCCACGAAGGCTCCACATACTCAGCCAGGAAGGACTGTCAGATGGCCCTGAACAGAGCAGAGTACGCCAGGGTCAAACTGGGAGAGCTGGGACGCACCTGCGAAGTCATGCTGGATCCACAACCCTGAGAGAAAACAGTCACACCAGAACGATGGTCGGGAGAGCGCAGTAGGTGGACGTTTCCATGACTTGTCACCGTGGTGTGTTAGCACCACCTGCCGCAGAGAGATGGGGTCTGAAAtactttgtttttttgtttttcatttttataTGATATTAGTCAGAAAATGTATCTGGCTATGTTTTGTAATAAAGTTAGTGTTTCATTACATTTCCCTATTTGTTTGATACATTCCTTCATATtgtatacacacagtacacacagtacacacagtacacactaacAAATAAACACACTGAGACCTGTTTTGTATGTTaactgtttttaaaaatgtacattttctaAAATGCAGTACAAAATAAAGAAGCGACATATATTCTCCAATGCTTTTAAa

Function

symbol description
med11 Predicted to enable transcription coregulator activity. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED11 (mediator complex subunit 11).

NR:

description
mediator of RNA polymerase II transcription subunit 11

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component

KEGG:

id description
K15131 MED11; mediator of RNA polymerase II transcription subunit 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614655.2 True 956 mRNA 0.43 3 11658664 11660833

Neighbor

gene id symbol gene type direction distance location
LOC110531444 LOC106577924 coding downstream 123225 11495542 ~ 11535439 (-)
LOC110531422 LOC106577877 coding downstream 773304 10791193 ~ 10885360 (-)
LOC110531427 LOC106577878 coding downstream 963101 10671988 ~ 10695563 (-)
LOC118965993 NA coding downstream 994100 10661390 ~ 10664564 (-)
LOC110531436 LOC106578050 coding downstream 1384684 10262293 ~ 10273980 (-)
LOC110531452 LOC106577886 coding upstream 37559 11698392 ~ 11701613 (-)
LOC110531453 LOC106577884 coding upstream 81078 11741911 ~ 11750227 (-)
LOC110532912 LOC106577883 coding upstream 98312 11759145 ~ 11788765 (-)
trnal-aag NA coding upstream 309336 11970169 ~ 11970250 (-)
LOC110531465 LOC107666294 coding upstream 465394 12092145 ~ 12144786 (-)
G771482 NA non-coding downstream 5049 11653071 ~ 11653615 (-)
G771437 NA non-coding downstream 6723 11590992 ~ 11651941 (-)
G771418 NA non-coding downstream 96525 11561796 ~ 11562139 (-)
G771417 NA non-coding downstream 98273 11560162 ~ 11560391 (-)
G771019 NA non-coding downstream 103861 11554432 ~ 11554803 (-)
G771463 NA non-coding upstream 18937 11679770 ~ 11680057 (-)
G771495 NA non-coding upstream 48530 11709363 ~ 11712243 (-)
G771498 NA non-coding upstream 57432 11718265 ~ 11718521 (-)
G771500 NA non-coding upstream 60691 11721524 ~ 11721767 (-)
G771501 NA non-coding upstream 62160 11722993 ~ 11723207 (-)
G771457 NA other downstream 29076 11628616 ~ 11629588 (-)
G770627 LOC106577876 other downstream 550505 11107828 ~ 11108159 (-)
G770549 NA other downstream 684251 10972373 ~ 10974413 (-)
G770225 NA other downstream 1282810 10367459 ~ 10375854 (-)
G768780 NA other downstream 2667958 8982468 ~ 8990706 (-)
G771540 LOC106577916 other upstream 210655 11870589 ~ 11916867 (-)
G771614 NA other upstream 310071 11970904 ~ 11971354 (-)
G772877 LOC106577934 other upstream 1333436 12994269 ~ 12996410 (-)

Expression


Co-expression Network