LOC110531451 (cq049)


Basic Information

Item Value
gene id LOC110531451
gene name cq049
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 11701997 ~ 11711985 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614659.2
TGACTGtaactgctggcaacaatttaataacgtttttttttattGCCGACATTGCATATTCAACAGCTGTTGCGTGTTCATAATTTTCTCAATTATTCTTCCCTCTGGCACACTcggacgagagtgctctgaactCGGAGTAGATTTCCAGAGTGCATTTACCAACGCACCCTCAATAACTGTGTCGAAATGTAGCTATAAAGTTTTTGAAACCTCACGTAATGTTATGTTGCCACTGCTATAAGATGACATGacattacaatattttttttcctttattcgctacaatgtttaaaaggggatAAAGAAAATTGAAACATAGTTATGAATTTGGACCAATCGTGAACACATCGCGTGGATTTTGGACCAATCATTGCTTGGAATTTACCAGCGCACGTTAGGACTTCCGTTTGTCTATTGATgtcgtttgtgtgtgttatttatttaattgtaCGTAAAAATAGCTGATTATTTCACACAAAACACATGGACTGTGTTACTAAAATGTAACGGGTCACTGAAACCATTAGCATATTGCAGACACGAATATCAATATTGTAGGACGCGTCGCGGACGAAGTTGTCCTTTGTTTTGCCAGCCTGCAGTgcaagcaagctagctaaacCTGAAACTAAACTAGCATCTCTAAATAGTGTTCTTTCTCGGAAAATCGGAGTAAGTACAGCAACTACAAAAAAGCAAAATGACTTCAGCCTCAACGAAGGTTGGAGAGATCTTctcagcagcaggagcagctttCACTAAGCTGGGTGAGCTGACCATGCAGCTGCATCCCGTGGCTGACTCCAGCCCTGCAGGGGCTCAGATTAAAACCACAGTCAAGAGGAAGCTATATGACGAGAGTGGGATGCCCATCTCCACCGACTCCCCAAAGAAGACCGTGAAGAAGACCGCTGTCACCATGGCCACCACGGCTACTCCAACTGTCATCGCTGTGCCAACTGCTCAGGTCATCTTGCCGGCAGGTCTCCAGGGCAACGTGACCGTGGCTCCTCCCGCTATGAAGAAACAGAAGACCTCAGCAGACGTGACCCTGAGTGCTCTGAATGACTCTGATGTGAACTCTGACttggagggactgggagagggaTCCAACTCCAAGAAACTAAACTTCGATCAGGACAACCTGAACCTCGATTCCGGCCTCATCATGAACTCAAGTGACCTGCCGCTCCTCTCTCGTTGACCTCTCACCATTCGACCTTCAGACGACCTCTTggctccatcccaaatggcaccctgtttcctacatagtgtactagttttgaccagatCCCCATGTACCCTGGTCAAATGCAGTGCActtaatagggtgccatttgagcagCCCAGGCATCTCTTCTATGAACAACAGCTGAGATCCTTCAGAAGATTTGCTTTGGCAGATCTCTATGGTTGTGTCTAAAACGgatccctatttagtgcactgcttttggccAGGGCCTACGATGCTATTGCTCTGGCAAAATAATTATTTGACACAAATTTCTCTTGCATGAGGAATGTGTTGGTGGATGTAAATAGTGTTATTTTCTTTCATACTTAGTTTTTTTGGTACCATGCAAAAAGCCACTGTGCGGTGAGTCTAGGGTCCAGGCTGATACGAGTGACCAAGGCCTGTAGTGTGTCAATTGCCACTCTTGGTTTATGGCTATACATGAATTATGATGTTGGTACCTATCGTCAAAAATATTCCTTTATCGAGGCAGCCCTGCGACAATTGTAAACGGttgtatacttaagcaataaggcctggtatatggccaatacaccacgGATAAGGGTTGTTCTTACACATGATGCAATGCGGAGTGTCTGGCTACAGCCCTTAGCTGGCCATATCACAAACCCCAGAAcagccttactgctattataaactggttaccaatgtaattagagcagtaaaaatacagtcacccctgtggtatatggtctgatataccatggctttcagggctcaaaccagTTTATAATGGATCATTGAGTTATTCATGAAATCCACCACTAAAAAGACAAATGTTTGAAAATCCTACTGGATAATGTCGCTATGAACTCAGAATTGTATCAAGGCATAGGAATTGTTTACAAATTCAGAGTTTAGTGTATAGTATTTTCCTTTCTATGAAACACTGTGGCAAAGAACATTGATCAAAACATGACCCACCTTCATCCTTCAGttttccccaaaaaaacatttgtccCTGCCTGTTTCGTGATGATGAAATTATGACAGTGATGATGAAATTACTTGTGTGACTTGCTGAATTATGGTGAATAAAAATGGAATTTTAATACAA
>XM_021614656.2
CTGtaactgctggcaacaatttaataacgtttttttttattGCCGACATTGCATATTCAACAGCTGTTGCGTGTTCATAATTTTCTCAATTATTCTTCCCTCTGGCACACTcggacgagagtgctctgaactCGGAGTAGATTTCCAGAGTGCATTTACCAACGCACCCTCAATAACTGTGTCGAAATGTAGCTATAAAGTTTTTGAAACCTCACGTAATGTTATGTTGCCACTGCTATAAGATGACATGacattacaatattttttttcctttattcgctacaatgtttaaaaggggatAAAGAAAATTGAAACATAGTTATGAATTTGGACCAATCGTGAACACATCGCGTGGATTTTGGACCAATCATTGCTTGGAATTTACCAGCGCACGTTAGGACTTCCGTTTGTCTATTGATgtcgtttgtgtgtgttatttatttaattgtaCGTAAAAATAGCTGATTATTTCACACAAAACACATGGACTGTGTTACTAAAATGTAACGGGTCACTGAAACCATTAGCATATTGCAGACACGAATATCAATATTGTAGGACGCGTCGCGGACGAAGTTGTCCTTTGTTTTGCCAGCCTGCAGTgcaagcaagctagctaaacCTGAAACTAAACTAGCATCTCTAAATAGTGTTCTTTCTCGGAAAATCGGAGTAAGTACAGCAACTACAAAAAAGCAAAATGACTTCAGCCTCAACGAAGGTTGGAGAGATCTTctcagcagcaggagcagctttCACTAAGCTGGGTGAGCTGACCATGCAGCTGCATCCCGTGGCTGACTCCAGCCCTGCAGGAGCTAAGTGGACGGACACTGAGATTGAGCAGCTGAGATCGGCCGTGGTGAGATTTGGTGATGACCTGAACTCTCTCAGCTCTGTCATCAAGGAGCGTACCGTGGCTCAGATTAAAACCACAGTCAAGAGGAAGCTATATGACGAGAGTGGGATGCCCATCTCCACCGACTCCCCAAAGAAGACCGTGAAGAAGACCGCTGTCACCATGGCCACCACGGCTACTCCAACTGTCATCGCTGTGCCAACTGCTCAGGTCATCTTGCCGGCAGGTCTCCAGGGCAACGTGACCGTGGCTCCTCCCGCTATGAAGAAACAGAAGACCTCAGCAGACGTGACCCTGAGTGCTCTGAATGACTCTGATGTGAACTCTGACttggagggactgggagagggaTCCAACTCCAAGAAACTAAACTTCGATCAGGACAACCTGAACCTCGATTCCGGCCTCATCATGAACTCAAGTGACCTGCCGCTCCTCTCTCGTTGACCTCTCACCATTCGACCTTCAGACGACCTCTTggctccatcccaaatggcaccctgtttcctacatagtgtactagttttgaccagatCCCCATGTACCCTGGTCAAATGCAGTGCActtaatagggtgccatttgagcagCCCAGGCATCTCTTCTATGAACAACAGCTGAGATCCTTCAGAAGATTTGCTTTGGCAGATCTCTATGGTTGTGTCTAAAACGgatccctatttagtgcactgcttttggccAGGGCCTACGATGCTATTGCTCTGGCAAAATAATTATTTGACACAAATTTCTCTTGCATGAGGAATGTGTTGGTGGATGTAAATAGTGTTATTTTCTTTCATACTTAGTTTTTTTGGTACCATGCAAAAAGCCACTGTGCGGTGAGTCTAGGGTCCAGGCTGATACGAGTGACCAAGGCCTGTAGTGTGTCAATTGCCACTCTTGGTTTATGGCTATACATGAATTATGATGTTGGTACCTATCGTCAAAAATATTCCTTTATCGAGGCAGCCCTGCGACAATTGTAAACGGttgtatacttaagcaataaggcctggtatatggccaatacaccacgGATAAGGGTTGTTCTTACACATGATGCAATGCGGAGTGTCTGGCTACAGCCCTTAGCTGGCCATATCACAAACCCCAGAAcagccttactgctattataaactggttaccaatgtaattagagcagtaaaaatacagtcacccctgtggtatatggtctgatataccatggctttcagggctcaaaccagTTTATAATGGATCATTGAGTTATTCATGAAATCCACCACTAAAAAGACAAATGTTTGAAAATCCTACTGGATAATGTCGCTATGAACTCAGAATTGTATCAAGGCATAGGAATTGTTTACAAATTCAGAGTTTAGTGTATAGTATTTTCCTTTCTATGAAACACTGTGGCAAAGAACATTGATCAAAACATGACCCACCTTCATCCTTCAGttttccccaaaaaaacatttgtccCTGCCTGTTTCGTGATGATGAAATTATGACAGTGATGATGAAATTACTTGTGTGACTTGCTGAATTATGGTGAATAAAAATGGAATTTTAATACAA
>XM_021614657.2
tttttattGCCGACATTGCATATTCAACAGCTGTTGCGTGTTCATAATTTTCTCAATTATTCTTCCCTCTGGCACACTcggacgagagtgctctgaactCGGAGTAGATTTCCAGAGTGCATTTACCAACGCACCCTCAATAACTGTGTCGAAATGTAGCTATAAAGTTTTTGAAACCTCACGTAATGTTATGTTGCCACTGCTATAAGATGACATGacattacaatattttttttcctttattcgctacaatgtttaaaaggggatAAAGAAAATTGAAACATAGTTATGAATTTGGACCAATCGTGAACACATCGCGTGGATTTTGGACCAATCATTGCTTGGAATTTACCAGCGCACGTTAGGACTTCCGTTTGTCTATTGATgtcgtttgtgtgtgttatttatttaattgtaCGTAAAAATAGCTGATTATTTCACACAAAACACATGGACTGTGTTACTAAAATGTAACGGGTCACTGAAACCATTAGCATATTGCAGACACGAATATCAATATTGTAGGACGCGTCGCGGACGAAGTTGTCCTTTGTTTTGCCAGCCTGCAGTgcaagcaagctagctaaacCTGAAACTAAACTAGCATCTCTAAATAGTGTTCTTTCTCGGAAAATCGGAGTAAGTACAGCAACTACAAAAAAGCAAAATGACTTCAGCCTCAACGAAGGTTGGAGAGATCTTctcagcagcaggagcagctttCACTAAGCTGGGTGAGCTGACCATGCAGCTGCATCCCGTGGCTGACTCCAGCCCTGCAGGAGCTAAGTGGACGGACACTGAGATTGAGCAGCTGAGATCGGCCGTGGTGAGATTTGGTGATGACCTGAACTCTCTCAGCTCTGTCATCAAGGAGCGTACCGTGGCTCAGATTAAAACCACAGTCAAGAGGAAGCTATATGACGAGAGTGGGATGCCCATCTCCACCGACTCCCCAAAGAAGACCGTGAAGAAGACCGCTGTCACCATGGCCACCACGGCTACTCCAACTGTCATCGCTGTGCCAACTGCTCAGGTCATCTTGCCGGCAGGTCTCCAGGGCAACGTGACCGTGGCTCCTCCCGCTATGAAGAAACAGAAGACCTCAGACGTGACCCTGAGTGCTCTGAATGACTCTGATGTGAACTCTGACttggagggactgggagagggaTCCAACTCCAAGAAACTAAACTTCGATCAGGACAACCTGAACCTCGATTCCGGCCTCATCATGAACTCAAGTGACCTGCCGCTCCTCTCTCGTTGACCTCTCACCATTCGACCTTCAGACGACCTCTTggctccatcccaaatggcaccctgtttcctacatagtgtactagttttgaccagatCCCCATGTACCCTGGTCAAATGCAGTGCActtaatagggtgccatttgagcagCCCAGGCATCTCTTCTATGAACAACAGCTGAGATCCTTCAGAAGATTTGCTTTGGCAGATCTCTATGGTTGTGTCTAAAACGgatccctatttagtgcactgcttttggccAGGGCCTACGATGCTATTGCTCTGGCAAAATAATTATTTGACACAAATTTCTCTTGCATGAGGAATGTGTTGGTGGATGTAAATAGTGTTATTTTCTTTCATACTTAGTTTTTTTGGTACCATGCAAAAAGCCACTGTGCGGTGAGTCTAGGGTCCAGGCTGATACGAGTGACCAAGGCCTGTAGTGTGTCAATTGCCACTCTTGGTTTATGGCTATACATGAATTATGATGTTGGTACCTATCGTCAAAAATATTCCTTTATCGAGGCAGCCCTGCGACAATTGTAAACGGttgtatacttaagcaataaggcctggtatatggccaatacaccacgGATAAGGGTTGTTCTTACACATGATGCAATGCGGAGTGTCTGGCTACAGCCCTTAGCTGGCCATATCACAAACCCCAGAAcagccttactgctattataaactggttaccaatgtaattagagcagtaaaaatacagtcacccctgtggtatatggtctgatataccatggctttcagggctcaaaccagTTTATAATGGATCATTGAGTTATTCATGAAATCCACCACTAAAAAGACAAATGTTTGAAAATCCTACTGGATAATGTCGCTATGAACTCAGAATTGTATCAAGGCATAGGAATTGTTTACAAATTCAGAGTTTAGTGTATAGTATTTTCCTTTCTATGAAACACTGTGGCAAAGAACATTGATCAAAACATGACCCACCTTCATCCTTCAGttttccccaaaaaaacatttgtccCTGCCTGTTTCGTGATGATGAAATTATGACAGTGATGATGAAATTACTTGTGTGACTTGCTGAATTATGGTGAATAAAAATGGAATTTTAATACAA
>XM_021614660.2
tttattGCCGACATTGCATATTCAACAGCTGTTGCGTGTTCATAATTTTCTCAATTATTCTTCCCTCTGGCACACTcggacgagagtgctctgaactCGGAGTAGATTTCCAGAGTGCATTTACCAACGCACCCTCAATAACTGTGTCGAAATGTAGCTATAAAGTTTTTGAAACCTCACGTAATGTTATGTTGCCACTGCTATAAGATGACATGacattacaatattttttttcctttattcgctacaatgtttaaaaggggatAAAGAAAATTGAAACATAGTTATGAATTTGGACCAATCGTGAACACATCGCGTGGATTTTGGACCAATCATTGCTTGGAATTTACCAGCGCACGTTAGGACTTCCGTTTGTCTATTGATgtcgtttgtgtgtgttatttatttaattgtaCGTAAAAATAGCTGATTATTTCACACAAAACACATGGACTGTGTTACTAAAATGTAACGGGTCACTGAAACCATTAGCATATTGCAGACACGAATATCAATATTGTAGGACGCGTCGCGGACGAAGTTGTCCTTTGTTTTGCCAGCCTGCAGTgcaagcaagctagctaaacCTGAAACTAAACTAGCATCTCTAAATAGTGTTCTTTCTCGGAAAATCGGAGTAAGTACAGCAACTACAAAAAAGCAAAATGACTTCAGCCTCAACGAAGGTTGGAGAGATCTTctcagcagcaggagcagctttCACTAAGCTGGGTGAGCTGACCATGCAGCTGCATCCCGTGGCTGACTCCAGCCCTGCAGGGGCTCAGATTAAAACCACAGTCAAGAGGAAGCTATATGACGAGAGTGGGATGCCCATCTCCACCGACTCCCCAAAGAAGACCGTGAAGAAGACCGCTGTCACCATGGCCACCACGGCTACTCCAACTGTCATCGCTGTGCCAACTGCTCAGGTCATCTTGCCGGCAGGTCTCCAGGGCAACGTGACCGTGGCTCCTCCCGCTATGAAGAAACAGAAGACCTCAGACGTGACCCTGAGTGCTCTGAATGACTCTGATGTGAACTCTGACttggagggactgggagagggaTCCAACTCCAAGAAACTAAACTTCGATCAGGACAACCTGAACCTCGATTCCGGCCTCATCATGAACTCAAGTGACCTGCCGCTCCTCTCTCGTTGACCTCTCACCATTCGACCTTCAGACGACCTCTTggctccatcccaaatggcaccctgtttcctacatagtgtactagttttgaccagatCCCCATGTACCCTGGTCAAATGCAGTGCActtaatagggtgccatttgagcagCCCAGGCATCTCTTCTATGAACAACAGCTGAGATCCTTCAGAAGATTTGCTTTGGCAGATCTCTATGGTTGTGTCTAAAACGgatccctatttagtgcactgcttttggccAGGGCCTACGATGCTATTGCTCTGGCAAAATAATTATTTGACACAAATTTCTCTTGCATGAGGAATGTGTTGGTGGATGTAAATAGTGTTATTTTCTTTCATACTTAGTTTTTTTGGTACCATGCAAAAAGCCACTGTGCGGTGAGTCTAGGGTCCAGGCTGATACGAGTGACCAAGGCCTGTAGTGTGTCAATTGCCACTCTTGGTTTATGGCTATACATGAATTATGATGTTGGTACCTATCGTCAAAAATATTCCTTTATCGAGGCAGCCCTGCGACAATTGTAAACGGttgtatacttaagcaataaggcctggtatatggccaatacaccacgGATAAGGGTTGTTCTTACACATGATGCAATGCGGAGTGTCTGGCTACAGCCCTTAGCTGGCCATATCACAAACCCCAGAAcagccttactgctattataaactggttaccaatgtaattagagcagtaaaaatacagtcacccctgtggtatatggtctgatataccatggctttcagggctcaaaccagTTTATAATGGATCATTGAGTTATTCATGAAATCCACCACTAAAAAGACAAATGTTTGAAAATCCTACTGGATAATGTCGCTATGAACTCAGAATTGTATCAAGGCATAGGAATTGTTTACAAATTCAGAGTTTAGTGTATAGTATTTTCCTTTCTATGAAACACTGTGGCAAAGAACATTGATCAAAACATGACCCACCTTCATCCTTCAGttttccccaaaaaaacatttgtccCTGCCTGTTTCGTGATGATGAAATTATGACAGTGATGATGAAATTACTTGTGTGACTTGCTGAATTATGGTGAATAAAAATGGAATTTTAATACAA

Function

NR:

description
PREDICTED: potential DNA-binding protein C17orf49 homolog isoform X3

GO:

id name namespace
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614659.2 False 2318 mRNA 0.43 5 11701997 11711985
XM_021614656.2 False 2417 mRNA 0.43 6 11702000 11711985
XM_021614657.2 False 2381 mRNA 0.43 6 11702033 11711985
XM_021614660.2 True 2277 mRNA 0.43 5 11702035 11711985

Neighbor

gene id symbol gene type direction distance location
LOC110531448 LOC100380705 coding upstream 4668 11682494 ~ 11697329 (+)
LOC110531447 LOC106577888 coding upstream 22296 11660843 ~ 11679701 (+)
LOC110531449 LOC105904870 coding upstream 47543 11559998 ~ 11654454 (+)
LOC110531445 hmgb3 coding upstream 150641 11545088 ~ 11551356 (+)
LOC110531441 LOC106577923 coding upstream 208671 11478157 ~ 11493326 (+)
LOC110531454 NA coding downstream 128277 11840262 ~ 11854816 (+)
LOC118965994 LOC106577916 coding downstream 183487 11895472 ~ 11906280 (+)
LOC110531455 LOC106577915 coding downstream 205396 11917381 ~ 11934471 (+)
LOC110531460 LOC106577893 coding downstream 275673 11987658 ~ 12032241 (+)
LOC110531463 LOC106577894 coding downstream 336966 12048951 ~ 12060447 (+)
G771023 LOC106577886 non-coding upstream 418 11698403 ~ 11701579 (+)
G771091 NA non-coding upstream 9137 11691913 ~ 11692860 (+)
G771026 NA non-coding upstream 21907 11679775 ~ 11680090 (+)
G771022 NA non-coding upstream 43424 11656424 ~ 11658573 (+)
G771096 NA non-coding downstream 707 11712692 ~ 11713040 (+)
G771097 NA non-coding downstream 4730 11716715 ~ 11716914 (+)
G771101 LOC100136012 non-coding downstream 12144 11724129 ~ 11724404 (+)
G771106 NA non-coding downstream 26105 11738090 ~ 11738294 (+)
G771137 NA non-coding downstream 59666 11771651 ~ 11773294 (+)
G769713 NA other upstream 918589 10783091 ~ 10783408 (+)
G769681 NA other upstream 1015975 10685137 ~ 10686022 (+)
G769489 LOC107579696 other upstream 1379263 10321983 ~ 10322734 (+)
G769335 NA other upstream 1720743 9980226 ~ 9981254 (+)
G768321 NA other upstream 2469511 9232160 ~ 9232486 (+)
LOC110531469 LOC106577901 other downstream 615041 12317006 ~ 12406007 (+)
G772033 LOC106577932 other downstream 1226477 12938462 ~ 12963571 (+)
LOC110531509 tmm85 other downstream 1375046 13087000 ~ 13095070 (+)
G772241 LOC106577945 other downstream 1679812 13391797 ~ 13392721 (+)
LOC110531525 LOC106577958 other downstream 1939337 13651265 ~ 13667682 (+)

Expression

LOC110531451(cq049) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 30.
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LOC110531451(cq049) Expression in each Bioproject

Bar chart with 21 bars.
LOC110531451(cq049) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network