LOC110531465 (LOC107666294)


Basic Information

Item Value
gene id LOC110531465
gene name LOC107666294
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 12092145 ~ 12144786 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614675.2
GCGTGCTGACGTAAGTCACCGGATTCTTTCCTACTACTAGCTTGTTGACTGGCCGAACGGGTTGTTCGCGTTAGCCGTACTTTTCTGCTGAAACAGAGATGGAGTGTTGACGCTTGCTGCGTTTAAAACCAAATCAAGTCATTCATATAGGAAGATACGCGTTAATATTTGCGTCGAGAACCCGATAAAATGATGCGTTTCATGCTGCTGTTCAGTCGGCAGGGGAAGCTGCGTCTCCAGAAGTGGTACACTGCCACGGCTGAGAGGGACAAGAAGAAGATGGTCAGGGAACTGATGCAGGTGGTCCTGGCCCGCAAACCCAAAATGAGCAGCTTCCTGGAGTGGAGGGACCTCAAGATCGTCTACAAGAGgtatgCCAGTCTGTATTTCTGCTGTGCGGTGGAAGAGCAGGACAACGAGCTCATTACTCTGGAGGTCATCCACCGCTTCGTAGAGCTGCTGGATAAGTACTTCGGCAGTGTTTGTGAGCTGGACATCATCTTTAACTTTGAGAAGGCCTACTTTATACTGGATGAGTTTCTGATCGGGGGAGAGATCCAGGACACGTCCAAGAAGAGTGTACTCAAGGCCATCGAACAGGCCGACCTACTGcaggagGAGGATGAATCTCCCAGGAGTGTTCTAGAGGAGATGGGTCTGGCATAGTGACAGCAGGGTACTCTGCTCACAACACTTTATCAGGCTACAGACAAAGACTCTTTGGGTTCCAGGTGcaggggggaggaaagggggttTGTGATGTGGGTGTGTATGGGGAGGGGGTAAATGGAGGGGTTTGGGTTAAGCGGGGGGGTCCGATGAGATTCACACCTTTGACGTTCTGGTACTACTGAATTCAAAGCATTGCTGACATTAATTGTATATTATCATGATGGTTTAAGGTTGCAAAGTGAACTTTCCCAAAATTCTcaagttttccagaaatcctgtatGGTGGATTCTGGATTTGTTGTTAAATCCTGTCTGATTCCTGGGGTTATACAACTATTTTAGGATAACCTGGGAATTTTTGGGAAGTTACCGGAATATTGCAACCGTAATGTATATTAGCTCTGTGAAAATCATTCCACTTTTGGCTGGAAGATTTATCTATTACTACTGTAATGTAACCCAGATttgggttcaaatagtatctgAAAATCCTTCAAGTACTTCCAGCGTTTGCTTTGGCCTGCCTGGAGAccattctattggttccattgtgccaggaAGTTTAATCAAGCTCGACTTTAAGTATTTGAAATGGTTTTAGAACCCAGGTCTGATTTGACCTTTGACATTTCCCTCAAAAGAGGCAGGTCAGAACACATCTCAAGCCTTTTTATAGCTGGGGATGCAATTAAACATCAAAACATCACTGAACAGGTTACTTTTGATCAGACTAGGGTTGCGTtgccaaatggcaacctattccctatatatagtgcatatgggctctggtcaaaagtagggcactacatagggaatagggtgccatttgggggacaTGAATTTGCTTTTAAATAAATggctgttttaaaatgttttgtatATGGACCACATGTTATGagattattattaataatagtaatataatacGTTTGCTGTTTTTAAGGGAACACATTGATTGTCTGCGTTGGTGAGCTTTGTTGAACCTATAGTAGGATCTTGTCAGGGAACAAAAAGAAGTAACCTTGACATTCATATAAAGAGGAAGGGAAACCATCTGAAAATGATTCTACCCAACATTCCAGTTCCATCCAGAGTTCCTTTAGAATTCTAGTTCTGTGTTCTATTCCGGAACTGTTTCAGaccatctctctgtcttgctctcttgTGTTGAGCAACTAACCTATGGAGAAGTCTGTGCCGTTTTAGCCCTTGTGTGGATGTGCTAACATGAATGTGTTTAAAGGGTGCAACGTGATGGTatatgatgaagatgatgatgattcaACTTAGTTAAAACGAACACAGGGCAAAAAAGTGTCGGTTTGTTTTTGAACTGCAATGCATAAAAATGTGAACTACTTTAAGATGCATGTGACTTTTTTTTGAGAAATACACCAAAAAAAATGGACCTAGCTACCATTCctatatacgcacacacacacacacactaaatgcaGTACTATATCACATGGCAGATCATTTCTCCCCAATTTCCGCCTCTGGAATACCTACTTTCCAAAGAGTCCTCATCTGTTTGTCTGCAACAAGAGGGAAGAAACTGCAACTAGTAGAGTTTAGCTTCAGACTATAAATGTGTGTTCTTGTAACCAGACTTTAGCCCTTTGCTTTTAACAAGGTACGTTCCAACCTTCATACCAACATACTACTTGCTAGTGTGCATTCCCAAATACGTTGCTTCACTCCAAGTAGTAGCAATACATAGGCTGTGTTCCAATATCCACGCTGGCATACCACTTAGAATTCATGCCCAATATATTACTTACCTACTTACCCAATCCTCTTTGTGTCTGGAGTAACGTAAGGCTTCTAGGAGAGAGCACCAGTGCCTCCGGTCTACAGCGTTCATGGTGAGGATGGATTAGATCAAGTCATACTCAATCTTCTTTTCAATCCTCCATCTCATCTGCCCTATATAGTGTTCTGTTCAAAGTGGGATGAAGTGATCTGAGCAATGGGACAGAGCTTCTTAGTGGTCTAGTGTGGATTATTGGAACTGCACCTGAAATTGGAAGATATTTtgagtagtgttgatgtttttcagggactctGTGGTGTTTTATTCCTTTTGTAATCCAGCATTAGGGGTAGGAGGTCTGATAAATAACTACTGAACTACGGTCCAGTCATGGTGCCCTCTTCCCTGAatgtgtttatttaactaggcaagtcagttaacaaattcttatttgcaatgatgaTTTACAATGGCTTTCAGACACGGAATCATGTGGCAATGTAATTTTATAATgacaataaaatcacattttaaaagTA
>XM_036987357.1
AGCGTGCTGACGTAAGTCACCGGATTCTTTCCTACTACTAGCTTGTTGACTGGCCGAACGGGTTGTTCGCGTTAGCCGTACTTTTCTGCTGAAACAGAGATGGAGTGTTGACGCTTGCTGCGTTTAAAACCAAATCAAGTCATTCATATAGGAAGATACGCGTTAATATTTGCGTCGAGAACCCGATAAAATGaTTATTACTAGAGAGAAAGCACTGAGCGGGTTTGACTATGCGTTTCATGCTGCTGTTCAGTCGGCAGGGGAAGCTGCGTCTCCAGAAGTGGTACACTGCCACGGCTGAGAGGGACAAGAAGAAGATGGTCAGGGAACTGATGCAGGTGGTCCTGGCCCGCAAACCCAAAATGAGCAGCTTCCTGGAGTGGAGGGACCTCAAGATCGTCTACAAGAGgtatgCCAGTCTGTATTTCTGCTGTGCGGTGGAAGAGCAGGACAACGAGCTCATTACTCTGGAGGTCATCCACCGCTTCGTAGAGCTGCTGGATAAGTACTTCGGCAGTGTTTGTGAGCTGGACATCATCTTTAACTTTGAGAAGGCCTACTTTATACTGGATGAGTTTCTGATCGGGGGAGAGATCCAGGACACGTCCAAGAAGAGTGTACTCAAGGCCATCGAACAGGCCGACCTACTGcaggagGAGGATGAATCTCCCAGGAGTGTTCTAGAGGAGATGGGTCTGGCATAGTGACAGCAGGGTACTCTGCTCACAACACTTTATCAGGCTACAGACAAAGACTCTTTGGGTTCCAGGTGcaggggggaggaaagggggttTGTGATGTGGGTGTGTATGGGGAGGGGGTAAATGGAGGGGTTTGGGTTAAGCGGGGGGGTCCGATGAGATTCACACCTTTGACGTTCTGGTACTACTGAATTCAAAGCATTGCTGACATTAATTGTATATTATCATGATGGTTTAAGGTTGCAAAGTGAACTTTCCCAAAATTCTcaagttttccagaaatcctgtatGGTGGATTCTGGATTTGTTGTTAAATCCTGTCTGATTCCTGGGGTTATACAACTATTTTAGGATAACCTGGGAATTTTTGGGAAGTTACCGGAATATTGCAACCGTAATGTATATTAGCTCTGTGAAAATCATTCCACTTTTGGCTGGAAGATTTATCTATTACTACTGTAATGTAACCCAGATttgggttcaaatagtatctgAAAATCCTTCAAGTACTTCCAGCGTTTGCTTTGGCCTGCCTGGAGAccattctattggttccattgtgccaggaAGTTTAATCAAGCTCGACTTTAAGTATTTGAAATGGTTTTAGAACCCAGGTCTGATTTGACCTTTGACATTTCCCTCAAAAGAGGCAGGTCAGAACACATCTCAAGCCTTTTTATAGCTGGGGATGCAATTAAACATCAAAACATCACTGAACAGGTTACTTTTGATCAGACTAGGGTTGCGTtgccaaatggcaacctattccctatatatagtgcatatgggctctggtcaaaagtagggcactacatagggaatagggtgccatttgggggacaTGAATTTGCTTTTAAATAAATggctgttttaaaatgttttgtatATGGACCACATGTTATGagattattattaataatagtaatataatacGTTTGCTGTTTTTAAGGGAACACATTGATTGTCTGCGTTGGTGAGCTTTGTTGAACCTATAGTAGGATCTTGTCAGGGAACAAAAAGAAGTAACCTTGACATTCATATAAAGAGGAAGGGAAACCATCTGAAAATGATTCTACCCAACATTCCAGTTCCATCCAGAGTTCCTTTAGAATTCTAGTTCTGTGTTCTATTCCGGAACTGTTTCAGaccatctctctgtcttgctctcttgTGTTGAGCAACTAACCTATGGAGAAGTCTGTGCCGTTTTAGCCCTTGTGTGGATGTGCTAACATGAATGTGTTTAAAGGGTGCAACGTGATGGTatatgatgaagatgatgatgattcaACTTAGTTAAAACGAACACAGGGCAAAAAAGTGTCGGTTTGTTTTTGAACTGCAATGCATAAAAATGTGAACTACTTTAAGATGCATGTGACTTTTTTTTGAGAAATACACCAAAAAAAATGGACCTAGCTACCATTCctatatacgcacacacacacacacactaaatgcaGTACTATATCACATGGCAGATCATTTCTCCCCAATTTCCGCCTCTGGAATACCTACTTTCCAAAGAGTCCTCATCTGTTTGTCTGCAACAAGAGGGAAGAAACTGCAACTAGTAGAGTTTAGCTTCAGACTATAAATGTGTGTTCTTGTAACCAGACTTTAGCCCTTTGCTTTTAACAAGGTACGTTCCAACCTTCATACCAACATACTACTTGCTAGTGTGCATTCCCAAATACGTTGCTTCACTCCAAGTAGTAGCAATACATAGGCTGTGTTCCAATATCCACGCTGGCATACCACTTAGAATTCATGCCCAATATATTACTTACCTACTTACCCAATCCTCTTTGTGTCTGGAGTAACGTAAGGCTTCTAGGAGAGAGCACCAGTGCCTCCGGTCTACAGCGTTCATGGTGAGGATGGATTAGATCAAGTCATACTCAATCTTCTTTTCAATCCTCCATCTCATCTGCCCTATATAGTGTTCTGTTCAAAGTGGGATGAAGTGATCTGAGCAATGGGACAGAGCTTCTTAGTGGTCTAGTGTGGATTATTGGAACTGCACCTGAAATTGGAAGATATTTtgagtagtgttgatgtttttcagggactctGTGGTGTTTTATTCCTTTTGTAATCCAGCATTAGGGGTAGGAGGTCTGATAAATAACTACTGAACTACGGTCCAGTCATGGTGCCCTCTTCCCTGAatgtgtttatttaactaggcaagtcagttaacaaattcttatttgcaatgatgaTTTACAATGGCTTTCAGACACGGAATCATGTGGCAATGTAATTTTATAATgacaataaaatcacattttaaaagTA
>TU879159
ATTCACACCTTTGACGTTCTGGTACTACTGAATTCAAAGCATTGCTGACATTAATTGTATATTATCATGATGGTTTAAGGTTGCAAAGTGAACTTTCCCAAAATTCTcaagttttccagaaatcctgtatGGTGGATTCTGGATTTGTTGTTAAATCCTGTCTGATTCCTGGGGTTATACAACTATTTTAGGATAACCTGGGAATTTTTGGGAAGTTACCGGAATATTGCAACCGTAATGTATATTAGCTCTGTGAAAATCATTCCACTTTTGGCTGGAAGATTTATCTATTACTACTGTAATGTAACCCAGATttgggttcaaatagtatctgAAAATCCTTCAAGTACTTCCAGCGTTTGCTTTGGCCTGCCTGGAGAccattctattggttccattgtgccaggaAGTTTAATCAAGCTCGACTTTAAGTATTTGAAATGGTTTTAGAACCCAGGTCTGATTTGACCTTTGACATTTCCCTCAAAAGAGGCAGGTCAGAACACATCTCAAGCCTTTTTATAGCTGGGGATGCAATTAAACATCAAAACATCACTGAACAGGTTACTTTTGATCAGACTAGGGTTGCGTtgccaaatggcaacctattccctatatatagtgcatatgggctctggtcaaaagtagggcactacatagggaatagggtgccatttgggggacaTGAATTTGCTTTTAAATAAATggctgttttaaaatgttttgtatATGGACCACATGTTATGagattattattaataatagtaatataatacGTTTGCTGTTTTTAAGGGAACACATTGATTGTCTGCGTTGGTGAGCTTTGTTGAACCTATAGTAGGATCTTGTCAGGGAACAAAAAGAAGTAACCTTGACATTCATATAAAGAGGAAGGGAAACCATCTGAAAATGATTCTACCCAACATTCCAGTTCCATCCAGAGTTCCTTTAGAATTCTAGTTCTGTGTTCTATTCCGGAACTGTTTCAGaccatctctctgtcttgctctcttgTGTTGAGCAACTAACCTATGGAGAAGTCTGTGCCGTTTTAGCCCTTGTGTGGATGTGCTAACATGAATGTGTTTAAAGGGTGCAACGTGATGGTatatgatgaagatgatgatgattcaACTTAGTTAAAACGAACACAGGGCAAAAAAGTGTCGGTTTGTTTTTGAACTGCAATGCATAAAAATGTGAACTACTTTAAGATGCATGTGACTTTTTTTTGAGAAATACACCAAAAAAAATGGACCTAGCTACCATTCctatatacacacacacacacgcacacacacacaca
>TU879160
ATTCACACCTTTGACGTTCTGGTACTACTGAATTCAAAGCATTGCTGACATTAATTGTATATTATCATGATGGTTTAAGGTTGCAAAGTGAACTTTCCCAAAATTCTcaagttttccagaaatcctgtatGGTGGATTCTGGATTTGTTGTTAAATCCTGTCTGATTCCTGGGGTTATACAACTATTTTAGGATAACCTGGGAATTTTTGGGAAGTTACCGGAATATTGCAACCGTAATGTATATTAGCTCTGTGAAAATCATTCCACTTTTGGCTGGAAGATTTATCTATTACTACTGTAATGTAACCCAGATttgggttcaaatagtatctgAAAATCCTTCAAGTACTTCCAGCGTTTGCTTTGGCCTGCCTGGAGAccattctattggttccattgtgccaggaAGTTTAATCAAGCTCGACTTTAAGTATTTGAAATGGTTTTAGAACCCAGGTCTGATTTGACCTTTGACATTTCCCTCAAAAGAGGCAGGTCAGAACACATCTCAAGCCTTTTTATAGCTGGGGATGCAATTAAACATCAAAACATCACTGAACAGGTTACTTTTGATCAGACTAGGGTTGCGTtgccaaatggcaacctattccctatatatagtgcatatgggctctggtcaaaagtagggcactacatagggaatagggtgccatttgggggacaTGAATTTGCTTTTAAATAAATggctgttttaaaatgttttgtatATGGACCACATGTTATGagattattattaataatagtaatataatacGTTTGCTGTTTTTAAGGGAACACATTGATTGTCTGCGTTGGTGAGCTTTGTTGAACCTATAGTAGGATCTTGTCAGGGAACAAAAAGAAGTAACCTTGACATTCATATAAAGAGGAAGGGAAACCATCTGAAAATGATTCTACCCAACATTCCAGTTCCATCCAGAGTTCCTTTAGAATTCTAGTTCTGTGTTCTATTCCGGAACTGTTTCAGaccatctctctgtcttgctctcttgTGTTGAGCAACTAACCTATGGAGAAGTCTGTGCCGTTTTAGCCCTTGTGTGGATGTGCTAACATGAATGTGTTTAAAGGGTGCAACGTGATGGTatatgatgaagatgatgatgattcaACTTAGTTAAAACGAACACAGGGCAAAAAAGTGTCGGTTTGTTTTTGAACTGCAATGCATAAAAATGTGAACTACTTTAAGATGCATGTGACTTTTTTTTGAGAAATACACCAAAAAAAATGGACCTAGCTACCATTCctatatacacacacacacacacgcacacacacacaca

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0007399 nervous system development biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0030117 membrane coat cellular_component
GO:0005886 plasma membrane cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614675.2 False 2967 mRNA 0.42 5 12126227 12144785
XM_036987357.1 False 3005 mRNA 0.42 6 12126227 12144786
TU879159 False 1306 lncRNA 0.38 2 12092145 12128370
TU879160 True 1308 lncRNA 0.38 2 12092145 12128370

Neighbor

gene id symbol gene type direction distance location
trnal-aag NA coding downstream 155977 11970169 ~ 11970250 (-)
LOC110532912 LOC106577883 coding downstream 337462 11759145 ~ 11788765 (-)
LOC110531453 LOC106577884 coding downstream 376000 11741911 ~ 11750227 (-)
LOC110531452 LOC106577886 coding downstream 424614 11698392 ~ 11701613 (-)
LOC110531450 med11 coding downstream 465394 11658664 ~ 11660833 (-)
LOC110531459 LOC106577897 coding upstream 2708 12147494 ~ 12153015 (-)
trnas-uga-2 NA coding upstream 40846 12185486 ~ 12185735 (-)
trnaw-cca-4 NA coding upstream 53921 12198707 ~ 12198778 (-)
sox19b LOC106577904 coding upstream 291554 12436340 ~ 12441768 (-)
LOC110531476 LOC106608954 coding upstream 324019 12468805 ~ 12479392 (-)
G771679 NA non-coding downstream 37448 12088459 ~ 12088779 (-)
G771678 NA non-coding downstream 39962 12085968 ~ 12086265 (-)
G771675 NA non-coding downstream 45654 12080363 ~ 12080573 (-)
G771672 NA non-coding downstream 49833 12076093 ~ 12076394 (-)
G771668 NA non-coding downstream 52772 12072880 ~ 12073455 (-)
G771725 NA non-coding upstream 42294 12187080 ~ 12187426 (-)
G771726 NA non-coding upstream 42885 12187671 ~ 12187909 (-)
G771727 NA non-coding upstream 43455 12188241 ~ 12188777 (-)
G771728 LOC100380853 non-coding upstream 46852 12191638 ~ 12191994 (-)
G771614 NA other downstream 154873 11970904 ~ 11971354 (-)
G771540 LOC106577916 other downstream 237512 11870589 ~ 11916867 (-)
G771457 NA other downstream 496639 11628616 ~ 11629588 (-)
G772877 LOC106577934 other upstream 849483 12994269 ~ 12996410 (-)
G773163 NA other upstream 1445467 13586326 ~ 13666937 (-)
G773168 NA other upstream 1552393 13697179 ~ 13699328 (-)
LOC110531538 NA other upstream 1835542 13977459 ~ 13987582 (-)
LOC118966145 LOC106599223 other upstream 2104615 14249401 ~ 14254157 (-)
G771697 NA non-coding upstream 10013 12138383 ~ 12172572 (-)

Expression


Co-expression Network