senp3b (LOC106577906)


Basic Information

Item Value
gene id senp3b
gene name LOC106577906
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 12484761 ~ 12507741 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614682.2
GTCTTGCTAAACTGCTACTGCTTTTTAACCCATTTTAAAACGTCCCAAATGTAATTTAAGTTATGTCCCTTATTATGCATAGTGCCGTATAACAGCAAATCATCTGTTCTAAAAGTGATGTTATTTTCTTGAAACCGGAAGTCCGGAAAGGGATCAAAGTAACGGGGGTGACTGACGATTGCTTTAACTACACCTGTCTGCTTCATTGAATGAGGTTTACTAGAACATTGGTGTCCGTTTTGATCCCAAATATAATTTAAAACACTGCGCAAACGCTTAACTGTATATAAGTCATATATTTGCACAAAACTGCAGTTTAACGGCGACGAGCTGGCGCAGGTCGTGGGTTGCCCGTGGACCATGAGGGACAGTGGTAGCAGCCTAGCACAGAACCGCTGGCAGGGAGAGCTGGGCCTAGCTGTGGGCCAGGAAGacagtggaggtggtggtgtaggAATCTCTGGGGGTCATCTGGGGATGGACCCCACCTCCACCCACCAGATGCCTAGCCCCATGCACCTGAAACTGGACCAGAAAGAAAGGGAGGCCTGGGATGCTGAGTACATGGAGGAGTTGGAgcgggaggagatggaggaggatgggGATGAGGAAGAAGATGAGGAAGAAGTGGATTTTGAAGGTGAAGGCTGGGatgaggaggagcaggaagaagaggaggaagatggagaggaggCTGAGGTTGAATGGGAGGTCCCACACATGGTTCCCACCACATCCCTACAAGAGCAGAATCATCATCACCAGCTGCAAGCACCACTGGAGGATGATGATGACGACAATGACAACAACCAGGCCGAAAATAAAGCCAGGGACTTTCCCAGCAACCCTATCCAGTCCAGGCTCAATGTGCTCCGGCAGCGCAGGCTAAGGCGCTGGCGGAAGCTCCGCTCCCATTCCGGCCTTCGGTCCCGCCTTACTCAGCATTGGAAGACCTGGCGTCAGCGGGCCCTGTGGGTCGGCACCCTGGGGCACAGGAGGGCGAGGAAGTGGCCCCAGTACAGTCAGTACGCCAACCGGCACAGGAGGGGAGCAGACCCGGGCCTCAGCCCGCTGTCAGACGACGAGAGGCTCAGTGGGTCTGAACGAGACGACCGGTTGAATGGTTACTCAGGAGATTACCAGTCCATCCAGATGGGAGTTCTGGGGGAACCGGAGGCTTCCTACTCTATCGTCCGAGAGAAACCTGTGGAGGTCGCCCTCACTGAAGAACACATGAGCTGCGTGCATGGGATCCTGGACGAGTCTCTCCAGAAGTATGGCAGTCTGATCCCCATCCACGCTGACGACGTGGTGGAGAAACTACAGGACATCTTCAATGACAACTTCTCACAGCCTCACAGGAAAGCGGTGGTGCAACACCTAATCCAGTCCTACCAGAGGTCGTCCGGCACGGCCATGGTGCGAGGGTTCCGCGTCAACTACAAGCGTCATGTCCTCACCATGGATGATCTCAGCACGCTGTACGGACAGAACTGGCTCAATGACCAGGTCATGAACATGTATGGTGACCTTGTGATGGACTCGGTGCCCGAGAAGGTTCACTTCTTCAACAGTTTCTTTTACGACAAGTTGAGGACGAAAGGCTACGATGGAGTCAAACGATGGACAAAGAACGTGGATATATTCCAGAAGGACCTGCTGTTGATCCCCATCCACCTGGAGGTCCACTGGTCCCTGGTCAGTGTGGACATCCCCCGTAGGGCCATCACCTACTTCGATTCCCAACGCACACTTAACCGACGCTGCCCAAAGCATATTGCAAAGTACCTGCAGGCGGAGGCTGTCAAGAAAGACCAGAGAGATTTCCTCACAGGGTGGAAAGGCTATTTCAAAATGAATGTTGGCCGCCAGAACAATGACAGTGACTGCGGAGCGTTCGTTCTTCAGTACTGCAAGACTCTGGCCCTGGGGCAGCCGTTCAGCTTCGGCCAGCAGGATATGCCCAAACTGAGAAGACTCATGTACAAAGAACTGTGTCACTGCAAGCTCTCGCTGTGACGCCACGCCCTCTGAGGATTCTTAGTGAAGAAGCGGCAGATTCTAACGAGGAAGTGAGGGATGGTTCTAACAAGCTATGGTTAAGCTAGTGACTGAAAGAAAGGAAAAGAGTGTTACATTTCAAAGGAACATTTTTCTCTTCACAACGACATCCAGAGACTTTACTACTTACTTTAAGTCAGGAGGGCATTTTATATTTTCTCCCCACGTGTTTTCTGCCCTCTTTCTGTTTTTCTCccttgacacccccccccccccccccatagtttTTAATTTTCATGTCCATGGTTGTTTCCTTGTGGTTGACAGAGGCCAAGTCTAAGAGTGCGTCCTAAATGGCTCaatgttccctatgtagtgtactacttttgaccctaGCCTTATTGGGCCTTGATCAGATGCAGTACAAGGTATAGGTAATAGGGTTCCTTTTGGGACGTAAACCATGTCTGCTATTCTCTGACAGTGAAACTGTATTTTAAAAATTTTAAAAACCATTTTATTTGGACTTGggagactctctctttctctcaacagaTTTATCACCTTATCGACGCAGGAGCCCCCCAAACAGACAAGATTGGAGTGGAAACAAGTGGTTATTCTAGCTTCTTTACTTAAGTTCTTGTTTTTTGTTCCGCCCTCtcgtcagtaaaaaaaaaaataaacatgttgcTAATGCTTATTGTTCATGGTGTTTTGAGGGCAGTGATGATTTCTGTTTCTTATTTTGATTCAAATAAAAACTATCTGACTAGTTCATGTTGACGTCA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K08593 SENP3; sentrin-specific protease 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614682.2 True 2792 mRNA 0.50 11 12484761 12507741

Neighbor

gene id symbol gene type direction distance location
LOC110531476 LOC106608954 coding downstream 5369 12468805 ~ 12479392 (-)
LOC118966199 NA coding downstream 9112 12475507 ~ 12475649 (-)
LOC118966200 NA coding downstream 10969 12473668 ~ 12473792 (-)
LOC118966197 NA coding downstream 13643 12470976 ~ 12471118 (-)
sox19b LOC106577904 coding downstream 42993 12436340 ~ 12441768 (-)
LOC110531481 LOC106577909 coding upstream 44384 12552125 ~ 12562614 (-)
LOC110531482 LOC106577910 coding upstream 58641 12566380 ~ 12583501 (-)
LOC110531484 LOC106577912 coding upstream 88144 12595885 ~ 12635228 (-)
trnaa-ugc-29 NA coding upstream 145978 12653719 ~ 12653789 (-)
LOC110531492 LOC106577986 coding upstream 348825 12856566 ~ 12876446 (-)
G772608 NA non-coding downstream 2858 12481459 ~ 12481903 (-)
G772599 NA non-coding downstream 22155 12462392 ~ 12462606 (-)
G771840 NA non-coding downstream 67917 12415730 ~ 12416844 (-)
G771836 NA non-coding downstream 70966 12412512 ~ 12413795 (-)
G771830 NA non-coding downstream 81625 12402395 ~ 12403136 (-)
G772619 NA non-coding upstream 1480 12509221 ~ 12509435 (-)
G772620 NA non-coding upstream 1985 12509726 ~ 12509981 (-)
G772621 NA non-coding upstream 2308 12510049 ~ 12510423 (-)
G772622 NA non-coding upstream 3115 12510856 ~ 12511070 (-)
G772623 NA non-coding upstream 4310 12512051 ~ 12512389 (-)
G771614 NA other downstream 513407 11970904 ~ 11971354 (-)
G771540 LOC106577916 other downstream 596046 11870589 ~ 11916867 (-)
LOC110532912 LOC106577883 other downstream 696192 11759145 ~ 11788765 (-)
LOC110531452 LOC106577886 other downstream 783178 11698392 ~ 11701613 (-)
G771457 NA other downstream 855173 11628616 ~ 11629588 (-)
G772877 LOC106577934 other upstream 486528 12994269 ~ 12996410 (-)
G773163 NA other upstream 1082512 13586326 ~ 13666937 (-)
G773168 NA other upstream 1189438 13697179 ~ 13699328 (-)
LOC110531538 NA other upstream 1472587 13977459 ~ 13987582 (-)
LOC118966145 LOC106599223 other upstream 1741660 14249401 ~ 14254157 (-)

Expression


Co-expression Network