LOC110531481 (LOC106577909)


Basic Information

Item Value
gene id LOC110531481
gene name LOC106577909
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 12552125 ~ 12562614 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614685.2
ATGACCTTCATGTAAATAAtttacattatttttatttcatagGTTTAATTTTCAACAAATCGCCAACAATGCAGGTCCTTCTGTTAGCCACCGTTCTCTTCTGCGTGGAGGACTTCGTCCGTGCTGAGCCCAAACAGAAGTGCACCGAGCGCTGCGACGTGAGCacttgccccagccccagctgcCCGATGGGGTACGTTCCAGACCGATGCAACTGCTGCCTGGTATGCGCCCAGGGCGAAGGCGAACCATGCGGGCGCAAAGACGACCTTCCCTGCGGTGATGGACTCGACTGCAAGCACCCGGCCGGCAAGCGGCTCGCCAAGGGGTTCTGCCAGTGCAAATTAGTGCATAAAGTCTGCGGCAGTGATGGCAATACATATGGGAACGTGTGTCAGCTTAAGGCGCAGAGTAGGAAGGCTCTGCAACAGGGTCTGCCAGCCATCAACTCGGTCCAGAAGGGACCATGCAAAATCAACCAAAACAAAGTATAGGTACTTCACACCCCACCAGTCCCAGGTATAAGTTTAACTTCATAGCTGACGTGGTGGAGAAGATCGCTCCGGCTGTGGTCCACATCGAACTCTTCCTCAGACACCCTCTGTTCGGCCGGAACGTCCCTCTGTCTAGCGGGTCAGGCTTTGTGATGTCAGAGACGGGCCTGATAGTGACCAATGCCCACGTCGTGTCCAGCACCACGCCTATGTCAGGTCATCAGCAGCTCAAGGTTCAGATGCACAGTGGTGACATCTACGAGGCGACCATCAAGGACATCGACAAGAAGTCCGACATCGCCACCATAAAAGTCAACTCACTGAAAAAGCTCTCTGTGCTGTTGCTAGGCCACTCGGCCGACCTTCGACCCGGTGAGTTTGTGGTTGCGATCGGCAGCCCCTTTGCGCTCCAGAACACGGTTACCACGGGGATCGTGAGCACGGCCCAGAGGGACGGCAAAGAGCTGGGCATCAGAGACTCTGACATGGGCTATGTACAGACGGACGCCATCATTAACTATGGAAATTCAGGTGGACCTCTCGTTAACTTGGATGGAGAGGTGATCGGCATCAACACTCTCAAGGTGGCTGCTGGGATTTCCTTCGCCATCCCCTCTGATAGGATCACACGCTTCCTCAACGAATCAATGGACAAGCAGAGCAAAGaagtGAGATCACTGAAGAAGCGGTTTATTGGAATAAGGATGCTCACCATCACCTCAGCCCTGGTTGAGGAGCTGAAGCAGCAGAACCCAGACTTCCCAGAGGTCACTAGTGGGATCTACGTTCATGAAGTGGTTCCTCACTCTCCTGCACAGAAAGGTGGAATCAGAGACGGCGACATCATCGTGAAGCTGAACGGCCGTCCGCTGCTGACCACTGCTGACCTACAGGGGGCGCTCACAGAGGAGACGACTCTGCTGTTGGAGGTCAGGAGGGGCAACGACGACCTACTCTTCAACATCCAGCCTGATGTCATTATGCAGTAATCATGACGAAAATGACCATCAGTGTATTcaagataaaaaaataataataataatctgaacGTTCTGTAACGTTGCAATGTCACTCATGAACAGGCCCCTTGCTGTTCCAACACCGAGCCCGACGACGTCGTCGGGCAGTAACCATGGCAACTGCGGTGTGGAATCCGGGAGACTGATAAAAGTATATGGACCACCAAACAAACACGCTTGTTGAGAGACCTAGACACTGATAGTTGCCCCTAATcactgatctagggtcagttGTTTGTTTCTCCCCCTAATGGTTGATGATAGTAGGATTTGGGAGGGTAAAATAGGATCCTAGATCTATGCCTAAAGGGTGACTTTTTAACCATTCAGATCCAAGGTGAAGACGATCAACAAACAGAAAAACAGTGTTTGTTTGTTGGAACCTTGATGGGGAAACGATAGACCGACTGAACCTTGTTTGGGAAATCTCCACAGAACTCTGGAGTCCAGATGCATTTAGGACTGAAAGTCCCAGTGAAACCAAACACTTGATTTTTATTGTTATATATGTGTTTTGTATCATCTAAATGTCTTTGTCAAAGCCTACTAGCTGTTACTTGAGAATTACTTACTCCAAATGCAAGCGATCATTGGTAAGACAAGTTTTAGCATAATAGATGTTTCAATTGTTACATTGCTTTTATGGCCTTTTAAATCTGTTAGAATAGAAATAATTTCTGTATATACGAGTAGCTGTGTCCAATGCTGTCGGTTCGGAACCATTCCCCTAACCAACTGTGAATGTTATTTGGTCAGTTATAGGTTGAAAGAAAGATCACATTTTGGTCAGAAATGGTCAGTTGaaagaaatacattatttttCAGCTGGTAAAATGTAAGCAAACGTCTGATTTGAATCTGTTGCTGTATTCTTGCGGTCTTCTACTATAACCGACACGTTGGTAACACTTTCCATTAATGTCCCCTTTATGAAGGTGTTATGAGATGTTCATAAGTAGTTTACAATACCAACTTGTGCTTAAAATATGAATAAATAAACTCACTTTACAGGCAGTGAGTTATATATTAATCA
>XM_021614683.2
AGGGGCAGAGCCAGACCAGATGCGAACGAATGATATGGGATCTTCCAAAAAACCTGAGAAAAGAAAAGCCACTGCACTGCTGCACTGACACTCATTTCAATGGAGACTCGGCGTCACCGGGATCTTTACAAATAACGTACAGCTAGTTGTAAACACTGCATCGATCTTTGTGATGAATTTCCACTCCTTTGGGAGACAGTTACCCATTTAATCTGAATCAGGATATGCATATGAGTGAAGAACTTTTCAGTCGTAAGAAGACACCAATGTCTGTCCTGCAAGCGTAAATTTGTCTCAACAGTCCCGTGAAAGTGATGCATAAAGACGTTGCGCGTCGTTTAATCTTCCCAAATTACCAGTAACCGTTTTGTGACGAACATGACCTTCATGTAAATAAtttacattatttttatttcatagGTTTAATTTTCAACAAATCGCCAACAATGCAGGTCCTTCTGTTAGCCACCGTTCTCTTCTGCGTGGAGGACTTCGTCCGTGCTGAGCCCAAACAGAAGTGCACCGAGCGCTGCGACGTGAGCacttgccccagccccagctgcCCGATGGGGTACGTTCCAGACCGATGCAACTGCTGCCTGGTATGCGCCCAGGGCGAAGGCGAACCATGCGGGCGCAAAGACGACCTTCCCTGCGGTGATGGACTCGACTGCAAGCACCCGGCCGGCAAGCGGCTCGCCAAGGGGTTCTGCCAGTGCAAATTAGTGCATAAAGTCTGCGGCAGTGATGGCAATACATATGGGAACGTGTGTCAGCTTAAGGCGCAGAGTAGGAAGGCTCTGCAACAGGGTCTGCCAGCCATCAACTCGGTCCAGAAGGGACCATGCAAAATCAACCAAAACAAAGGTACTTCACACCCCACCAGTCCCAGGTATAAGTTTAACTTCATAGCTGACGTGGTGGAGAAGATCGCTCCGGCTGTGGTCCACATCGAACTCTTCCTCAGACACCCTCTGTTCGGCCGGAACGTCCCTCTGTCTAGCGGGTCAGGCTTTGTGATGTCAGAGACGGGCCTGATAGTGACCAATGCCCACGTCGTGTCCAGCACCACGCCTATGTCAGGTCATCAGCAGCTCAAGGTTCAGATGCACAGTGGTGACATCTACGAGGCGACCATCAAGGACATCGACAAGAAGTCCGACATCGCCACCATAAAAGTCAACTCACTGAAAAAGCTCTCTGTGCTGTTGCTAGGCCACTCGGCCGACCTTCGACCCGGTGAGTTTGTGGTTGCGATCGGCAGCCCCTTTGCGCTCCAGAACACGGTTACCACGGGGATCGTGAGCACGGCCCAGAGGGACGGCAAAGAGCTGGGCATCAGAGACTCTGACATGGGCTATGTACAGACGGACGCCATCATTAACTATGGAAATTCAGGTGGACCTCTCGTTAACTTGGATGGAGAGGTGATCGGCATCAACACTCTCAAGGTGGCTGCTGGGATTTCCTTCGCCATCCCCTCTGATAGGATCACACGCTTCCTCAACGAATCAATGGACAAGCAGAGCAAAGaagtGAGATCACTGAAGAAGCGGTTTATTGGAATAAGGATGCTCACCATCACCTCAGCCCTGGTTGAGGAGCTGAAGCAGCAGAACCCAGACTTCCCAGAGGTCACTAGTGGGATCTACGTTCATGAAGTGGTTCCTCACTCTCCTGCACAGAAAGGTGGAATCAGAGACGGCGACATCATCGTGAAGCTGAACGGCCGTCCGCTGCTGACCACTGCTGACCTACAGGGGGCGCTCACAGAGGAGACGACTCTGCTGTTGGAGGTCAGGAGGGGCAACGACGACCTACTCTTCAACATCCAGCCTGATGTCATTATGCAGTAATCATGACGAAAATGACCATCAGTGTATTcaagataaaaaaataataataataatctgaacGTTCTGTAACGTTGCAATGTCACTCATGAACAGGCCCCTTGCTGTTCCAACACCGAGCCCGACGACGTCGTCGGGCAGTAACCATGGCAACTGCGGTGTGGAATCCGGGAGACTGATAAAAGTATATGGACCACCAAACAAACACGCTTGTTGAGAGACCTAGACACTGATAGTTGCCCCTAATcactgatctagggtcagttGTTTGTTTCTCCCCCTAATGGTTGATGATAGTAGGATTTGGGAGGGTAAAATAGGATCCTAGATCTATGCCTAAAGGGTGACTTTTTAACCATTCAGATCCAAGGTGAAGACGATCAACAAACAGAAAAACAGTGTTTGTTTGTTGGAACCTTGATGGGGAAACGATAGACCGACTGAACCTTGTTTGGGAAATCTCCACAGAACTCTGGAGTCCAGATGCATTTAGGACTGAAAGTCCCAGTGAAACCAAACACTTGATTTTTATTGTTATATATGTGTTTTGTATCATCTAAATGTCTTTGTCAAAGCCTACTAGCTGTTACTTGAGAATTACTTACTCCAAATGCAAGCGATCATTGGTAAGACAAGTTTTAGCATAATAGATGTTTCAATTGTTACATTGCTTTTATGGCCTTTTAAATCTGTTAGAATAGAAATAATTTCTGTATATACGAGTAGCTGTGTCCAATGCTGTCGGTTCGGAACCATTCCCCTAACCAACTGTGAATGTTATTTGGTCAGTTATAGGTTGAAAGAAAGATCACATTTTGGTCAGAAATGGTCAGTTGaaagaaatacattatttttCAGCTGGTAAAATGTAAGCAAACGTCTGATTTGAATCTGTTGCTGTATTCTTGCGGTCTTCTACTATAACCGACACGTTGGTAACACTTTCCATTAATGTCCCCTTTATGAAGGTGTTATGAGATGTTCATAAGTAGTTTACAATACCAACTTGTGCTTAAAATATGAATAAATAAACTCACTTTACAGGCAGTGAGTTATATATTAATCA

Function

NR:

description
serine protease HTRA3-like isoform X1

GO: NA

KEGG:

id description
K08785 HTRA3; HtrA serine peptidase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614685.2 False 2546 mRNA 0.47 9 12552125 12562236
XM_021614683.2 True 2919 mRNA 0.47 9 12552125 12562614

Neighbor

gene id symbol gene type direction distance location
senp3b LOC106577906 coding downstream 44384 12484761 ~ 12507741 (-)
LOC110531476 LOC106608954 coding downstream 72733 12468805 ~ 12479392 (-)
LOC118966199 NA coding downstream 76476 12475507 ~ 12475649 (-)
LOC118966200 NA coding downstream 78333 12473668 ~ 12473792 (-)
LOC118966197 NA coding downstream 81007 12470976 ~ 12471118 (-)
LOC110531482 LOC106577910 coding upstream 3768 12566380 ~ 12583501 (-)
LOC110531484 LOC106577912 coding upstream 33271 12595885 ~ 12635228 (-)
trnaa-ugc-29 NA coding upstream 91105 12653719 ~ 12653789 (-)
LOC110531492 LOC106577986 coding upstream 293952 12856566 ~ 12876446 (-)
ripk3 ripk4 coding upstream 403519 12966133 ~ 12983100 (-)
G772653 NA non-coding downstream 3861 12547908 ~ 12548264 (-)
G772646 NA non-coding downstream 8717 12543191 ~ 12543408 (-)
G772645 NA non-coding downstream 9347 12542455 ~ 12542778 (-)
G772643 NA non-coding downstream 11554 12540280 ~ 12540571 (-)
G772640 NA non-coding downstream 16401 12535468 ~ 12535724 (-)
G772658 NA non-coding upstream 21798 12584412 ~ 12584664 (-)
G772661 NA non-coding upstream 22130 12584744 ~ 12585399 (-)
G772665 NA non-coding upstream 26793 12589407 ~ 12589765 (-)
G772686 NA non-coding upstream 81353 12643967 ~ 12644277 (-)
G771614 NA other downstream 580771 11970904 ~ 11971354 (-)
G771540 LOC106577916 other downstream 663410 11870589 ~ 11916867 (-)
LOC110532912 LOC106577883 other downstream 763556 11759145 ~ 11788765 (-)
LOC110531452 LOC106577886 other downstream 850542 11698392 ~ 11701613 (-)
G771457 NA other downstream 922537 11628616 ~ 11629588 (-)
G772877 LOC106577934 other upstream 431655 12994269 ~ 12996410 (-)
G773163 NA other upstream 1027639 13586326 ~ 13666937 (-)
G773168 NA other upstream 1134565 13697179 ~ 13699328 (-)
LOC110531538 NA other upstream 1417714 13977459 ~ 13987582 (-)
LOC118966145 LOC106599223 other upstream 1686787 14249401 ~ 14254157 (-)

Expression


Co-expression Network